mRNA_H-paniculata_contig44060.11158.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44060.11158.1
Unique NamemRNA_H-paniculata_contig44060.11158.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig44060.11158.1 vs. uniprot
Match: A0A6H5KWI5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWI5_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 2.190e-7
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 VARQAHNPTDRHCKAAVKVISYLKRTKYSRLVFERGSRLNLSVDVDA 141
            VAR AH P +RH KA VK+++YLK T+   + +ERGS L L+V VDA
Sbjct:  148 VARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDA 194
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BLAST of mRNA_H-paniculata_contig44060.11158.1 vs. uniprot
Match: A0A6H5KTI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI8_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 2.280e-7
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 VARQAHNPTDRHCKAAVKVISYLKRTKYSRLVFERGSRLNLSVDVDA 141
            VAR AH P +RH KA VK+++YLK T+   + +ERGS L L+V VDA
Sbjct:  106 VARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDA 152
[Close]
BLAST of mRNA_H-paniculata_contig44060.11158.1 vs. uniprot
Match: A0A6H5KCK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK9_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 2.310e-7
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 VARQAHNPTDRHCKAAVKVISYLKRTKYSRLVFERGSRLNLSVDVDA 141
            VAR AH P +RH KA VK+++YLK T+   + +ERGS L L+V VDA
Sbjct:   54 VARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDA 100
[Close]
BLAST of mRNA_H-paniculata_contig44060.11158.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.110e-7
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 VARQAHNPTDRHCKAAVKVISYLKRTKYSRLVFERGSRLNLSVDVDA 141
            VAR AH P +RH KA VK+++YLK T+   + +ERGS L L+V VDA
Sbjct:  315 VARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDA 361
[Close]
BLAST of mRNA_H-paniculata_contig44060.11158.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.110e-7
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 VARQAHNPTDRHCKAAVKVISYLKRTKYSRLVFERGSRLNLSVDVDA 141
            VAR AH P +RH KA VK+++YLK T+   + +ERGS L L+V VDA
Sbjct:  402 VARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDA 448
[Close]
BLAST of mRNA_H-paniculata_contig44060.11158.1 vs. uniprot
Match: A0A6H5L715_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L715_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.130e-7
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 VARQAHNPTDRHCKAAVKVISYLKRTKYSRLVFERGSRLNLSVDVDA 141
            VAR AH P +RH KA VK+++YLK T+   + +ERGS L L+V VDA
Sbjct: 1381 VARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDA 1427
[Close]
BLAST of mRNA_H-paniculata_contig44060.11158.1 vs. uniprot
Match: A0A6H5JNN1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN1_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.130e-7
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 VARQAHNPTDRHCKAAVKVISYLKRTKYSRLVFERGSRLNLSVDVDA 141
            VAR AH P +RH KA VK+++YLK T+   + +ERGS L L+V VDA
Sbjct: 1479 VARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDA 1525
[Close]
BLAST of mRNA_H-paniculata_contig44060.11158.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 4.280e-7
Identity = 26/47 (55.32%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 VARQAHNPTDRHCKAAVKVISYLKRTKYSRLVFERGSRLNLSVDVDA 141
            VAR AH P +RH KA VK+++YLK T+   + +ERGS L L V VDA
Sbjct: 1704 VARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLEVYVDA 1750
[Close]
BLAST of mRNA_H-paniculata_contig44060.11158.1 vs. uniprot
Match: A0A6H5L589_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L589_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.480e-6
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 VARQAHNPTDRHCKAAVKVISYLKRTKYSRLVFERGSRLNLSVDVDA 141
            VAR AH P +RH KA VK+++YLK T+   + ++RGS L L V VDA
Sbjct:  187 VARHAHAPAERHWKAIVKILAYLKETRDLGITYKRGSGLGLEVYVDA 233
[Close]
BLAST of mRNA_H-paniculata_contig44060.11158.1 vs. uniprot
Match: A0A6H5K4H5_9PHAE (CCHC-type domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H5_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.500e-6
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 VARQAHNPTDRHCKAAVKVISYLKRTKYSRLVFERGSRLNLSVDVDA 141
            VAR AH P +RH KA VK+++YLK T+   + ++RGS L L V VDA
Sbjct: 1001 VARHAHAPAERHWKAIVKILAYLKETRDLGITYKRGSGLGLEVYVDA 1047
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44060.11158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KWI5_9PHAE2.190e-755.32Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTI8_9PHAE2.280e-755.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCK9_9PHAE2.310e-755.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCG0_9PHAE3.110e-755.32Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGX6_9PHAE3.110e-755.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L715_9PHAE3.130e-755.32CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JNN1_9PHAE3.130e-755.32CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5LGF7_9PHAE4.280e-755.32Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L589_9PHAE1.480e-653.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4H5_9PHAE1.500e-653.19CCHC-type domain-containing protein n=11 Tax=Ectoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44060contigH-paniculata_contig44060:401..547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930330.9656408-CDS-H-paniculata_contig44060:400..5471622930330.9656408-CDS-H-paniculata_contig44060:400..547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44060 401..547 -
1691481244.862348-CDS-H-paniculata_contig44060:400..5471691481244.862348-CDS-H-paniculata_contig44060:400..547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44060 401..547 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44060.11158.1prot_H-paniculata_contig44060.11158.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44060 401..547 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44060.11158.1

>prot_H-paniculata_contig44060.11158.1 ID=prot_H-paniculata_contig44060.11158.1|Name=mRNA_H-paniculata_contig44060.11158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
VARQAHNPTDRHCKAAVKVISYLKRTKYSRLVFERGSRLNLSVDVDAE*
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mRNA from alignment at H-paniculata_contig44060:401..547-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44060.11158.1 ID=mRNA_H-paniculata_contig44060.11158.1|Name=mRNA_H-paniculata_contig44060.11158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=147bp|location=Sequence derived from alignment at H-paniculata_contig44060:401..547- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGCGAGGCAAGCCCACAATCCTACGGACAGGCACTGCAAAGCAGCGGT
GAAAGTAATCTCGTATCTCAAGAGAACGAAATACTCGAGGTTAGTGTTCG
AAAGGGGTAGTAGGCTCAATCTGTCAGTGGATGTAGACGCAGAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig44060:401..547-

>mRNA_H-paniculata_contig44060.11158.1 ID=mRNA_H-paniculata_contig44060.11158.1|Name=mRNA_H-paniculata_contig44060.11158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig44060:401..547- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGCGAGGCAAGCCCACAATCCTACGGACAGGCACTGCAAAGCAGCGGT
GAAAGTAATCTCGTATCTCAAGAGAACGAAATACTCGAGGTTAGTGTTCG
AAAGGGGTAGTAGGCTCAATCTGTCAGTGGATGTAGACGCAGAGTAAGTA
GCGAGGCAAGCCCACAATCCTACGGACAGGCACTGCAAAGCAGCGGTGAA
AGTAATCTCGTATCTCAAGAGAACGAAATACTCGAGGTTAGTGTTCGAAA
GGGGTAGTAGGCTCAATCTGTCAGTGGATGTAGACGCAGAGTAA
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