mRNA_H-paniculata_contig44044.11156.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44044.11156.1
Unique NamemRNA_H-paniculata_contig44044.11156.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig44044.11156.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 8.920e-32
Identity = 109/346 (31.50%), Postives = 165/346 (47.69%), Query Frame = 1
Query:   97 RCFICRSKDHLQRDCP------NVYCRRCGKRGHES---------IASYITSTSTIGKEEVLS-------------MDCEGLEYREVGGMETSICDNGATKHMTHNSDFLSDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFVPLLSHHLLSLGKFSDVGHEYRCSREGLTL--KQGE-----RFGSLDGMRGSRVCPE-DSALATIALSRLPIHSATHMDINVFHCSFGHANEFLLRETAKQRGVVLTG-ELRVCSGCTMAKGLRKPISKAPAPRAVKILGLTYVDTCGLKGVLGVGGVRFMLIFRDSF*RKSTVYFMRSKSEVDRYLKQY 1023
            RCF C  K H    C       N  C  C   GH+          +A  ++   ++  +  ++             +   G+E +  G M   + D+GAT  M  ++D   +YQ+CN  V+   G  L I G G + +  + + + V + + + A VP +  +L+SL   ++ GH Y     GL L  K G+     + G L  + G +  PE D+A A I +      +AT  D+N FH S GHA+E LLR TAKQ+GV LTG  L  C+GC+MAKG  K + +    RAVK L   ++D  G      +GG  + LI R    R + V+F++ KSE    L+Q+
Sbjct:  468 RCFTCGLKGHKSFQCETKESDYNPQCEHCLGWGHKKEKCPTEAAVLAEVVSDVDSVENQAYMAEATQPGECGRTVDLGLVGVEEQGQGVMRY-VADSGATCSMFRSADGFKNYQECNRRVKGIGGEFLRILGYGDVTVVLQSEGQEVPVPIKRAAHVPGMDLNLISLTSLTEEGHTYAGKPGGLVLTTKAGKEVWFPQLGKLLSLWGYQTEPEVDTACAAIIVPG-EAKAATPTDLNEFHNSHGHAHERLLRLTAKQQGVELTGGPLLSCTGCSMAKGQVKAVQRFTDTRAVKKLFRVFIDLGGRMQFHSIGGRWYTLIIRCDATRWTRVFFLKRKSEAADALEQF 811          
BLAST of mRNA_H-paniculata_contig44044.11156.1 vs. uniprot
Match: A0A6H5KSM6_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM6_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 2.580e-24
Identity = 90/280 (32.14%), Postives = 127/280 (45.36%), Query Frame = 1
Query:   97 RCFICRSKDHLQRDCPNVYCRRCGKRG-----------HESI---------ASYITSTSTIGKEEVLSMDCEGLEYREVG--GMETS-----ICDNGATKHMTHNSDFLSDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFVPLLSHHLLSLGKFSDVG--------HEYRCSREGLTLKQGERFGSLDGMRGSRVCPEDSALATI---ALSRLPIHSATHMDINVFHCSFGHANEFLLRETAKQRGVVLTGELRVCSGCTMAKGL 822
            RCF C +K H   +CP     R                 E++         AS   +   + +E ++  D  G  ++ VG  G+E +     + D GAT HM  N+D    Y+ C+  VR+A G    I G G + +          + L +VA VP L ++L+SL    D G        HE    R G  +    R G+L    G R   E +  A     A +     S+T +DIN FHC++GH++E LLR TAKQ+G  L GELR C GC+ AKGL
Sbjct:  290 RCFRCGNKGHQVANCPESKPVRXXXXXXXXXXXXXXXTEEAVLVVEVPAGRASADATALDVAEEALVVGDISGECHKVVGRGGVEEARRGRYVADTGATTHMFANTDGFVHYEDCDRRVRVAAGETFSIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELELERGGGEVVYFPRCGNLYVQNGFRTHTEHACAAIAPGNAKAPSXKASSTPVDINDFHCAYGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGL 569          
BLAST of mRNA_H-paniculata_contig44044.11156.1 vs. uniprot
Match: A0A6H5K0G7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G7_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.510e-23
Identity = 86/261 (32.95%), Postives = 129/261 (49.43%), Query Frame = 1
Query:  277 GMETSICDNGATKHMTHNSDFLSDYQQCNG---HVRLADGNRLPIEGVGMLFLQFRFDSE-----VVLMKLTQVAFVPLLSHHLLSLGKFS---DVGHEYR--CSREGLTLKQGERFGSLDGMRGSRVCPEDSALATIALSRLPIH------SATHMDINVFHCSFGHANEFLLRETAKQRGVVLTGELRVCSGCTMAKGLRKPISKAPAPRAVKILGLTYVDTCGLKGVLGVGGVRFMLIFRDSF*RKSTVYFMRSKSEV 1002
            G E  + D+GA+   T +S  + D Q       +V + DG  L ++ +G + L F  + E      + +KLT V+ V  LS +L S    S    + ++ R    + GL   + E+  +   MR     P D +   +  + LP        +   +DIN FH S  HA E LLRETA+QRG+VLTG+L  C+ C  AKG R  + + P  RA K LG  ++D CG   V  +GG  ++ +  DS  R + VY +R KS+ 
Sbjct:  227 GSERWVADSGASNSFTDSSLHMYDLQAIPASRKYVVVGDGRMLEVQAIGSINLSFFQEDENGEKTTMCVKLTDVSAVESLSFNLFSTHAVSLKQPILYDERGATQQNGLLFAREEKASAAYAMR----LPYDPSATIVDPAALPAFVTAPDSAPASVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRASVPRGPGARASKPLGRVHLDLCGPL-VPSLGGNLYLFVAVDSASRWNKVYGLRRKSDA 482          
BLAST of mRNA_H-paniculata_contig44044.11156.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 3.760e-23
Identity = 80/248 (32.26%), Postives = 121/248 (48.79%), Query Frame = 1
Query:  280 METSICDNGATKHMTHNSDFLSDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFVPLLSHHLLS-LGKFSDVGHEYRCSREG-LTLKQGE-RFGSLDGMRGSRVCPEDSALATIALSRL----PIHSATHMDINVFHCSFGHANEFLLRETAKQRGVVLTGELRVCSGCTMAKGLRKPISKAPAPRAVKILGLTYVDTCGLKGVLGVGGVRFMLIFRDSF*RKSTVYFMRSKSEV 1002
            +E    D G   HMT +   + D + C+  V    G    I   G L L F        M+L  V + P L ++L S   +F           +G +T  +G+  F + DGM  +       A     L+ L    P H  T MD+N FH  + H+++ LLR TAK+ G  L GE+  C+GC+MAK ++K I++    R+ K LG  +VD  G K V  VGG  + +I +D F R++ +YF++ KS+ 
Sbjct:  522 VEDWYADTGTAFHMTDSLACMKDLKPCHKSVNGIGGVSCEISFSGTLELVFVTADSEFSMELKNVLYSPNLGYNLFSPSAEFDGESWNGLGGPDGVMTAFKGQVTFQNFDGMLIASAYRLGEASVGTVLAALTPSNPKHKTT-MDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDA 768          
BLAST of mRNA_H-paniculata_contig44044.11156.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.270e-22
Identity = 79/248 (31.85%), Postives = 121/248 (48.79%), Query Frame = 1
Query:  280 METSICDNGATKHMTHNSDFLSDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFVPLLSHHLLS-LGKFSDVGHEYRCSREG-LTLKQGE-RFGSLDGMRGSRVCPEDSALATIALSRL----PIHSATHMDINVFHCSFGHANEFLLRETAKQRGVVLTGELRVCSGCTMAKGLRKPISKAPAPRAVKILGLTYVDTCGLKGVLGVGGVRFMLIFRDSF*RKSTVYFMRSKSEV 1002
            +E    D G   HMT +   + D + C+  V    G    I   G L L F        ++L  V + P L ++L S   +F           +G +T  +G+  F + DGM  +       A     L+ L    P H  T MD+N FH  + H+++ LLR TAK+ G  L GE+  C+GC+MAK ++K I++    R+ K LG  +VD  G K V  VGG  + +I +D F R++ +YF++ KS+ 
Sbjct:  229 VEDWYADTGTAFHMTDSLACMKDLKPCHKSVNGIGGVSCEISFSGTLELVFVTADSEFSVELKNVLYSPNLGYNLFSPSAEFDGESWNGLGGPDGVMTAFKGQVTFQNFDGMLIASAYRLGEASVGTVLAALTPSNPKHKTT-MDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDA 475          
BLAST of mRNA_H-paniculata_contig44044.11156.1 vs. uniprot
Match: A0A6H5K4H5_9PHAE (CCHC-type domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H5_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 5.980e-21
Identity = 87/289 (30.10%), Postives = 130/289 (44.98%), Query Frame = 1
Query:   97 RCFICRSKDHLQRDCPN---VYCRRCGKRGHESIASYITSTSTIGKEEVLSMDCEGLEYREV-----------------GGMETS-----ICDNGATKHMTHNSDFLSDYQQCNGHVRLADGNR-LPIEGVGMLFLQFRFDSEVVLMKLTQVAFVPLLSHHLLSL--------GKFSDVGHEYRCSREGLTLKQGERFGSLDGMRGSRV-CPEDSALATIALSRLPIHSATHMDINVFHCSFGHANEFLLRETAKQRGVVLTGELRVCSGCTMAKGLRKPISKAPAPRA 858
            RCF C  K H    C     + C +C   GH+   S  +S   +   E+  +D   L+  E                  GG+E +     + D GAT HM  +++   +Y +C+  + +A G +   I G G + +          + L +VA VP L+++L+SL        G+ +    E      G        +G L    G R+    + A A IA      +  T +DIN FHC+ GH++E LL+ TAKQ+GV L G+LR C GC+ AKGL KPI    + RA
Sbjct:  393 RCFRCGEKGHQAAACTKPEPLRCEKCLGYGHDK--SKCSSEQAVLAVELPVLDATALDVAEEALVVRDFTGEWNRVVDRGGVEQARQERFVADTGATNHMFPSANAFENYHECDRRLSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSLTALLKQTKGRLAADERELEVFVGGGESVYFPLWGDLFVQTGHRIDSGRELACAIIAPGNAKANR-TPVDINDFHCAHGHSHEVLLKNTAKQQGVTLVGQLRECMGCSTAKGLSKPIPNRTSTRA 678          
BLAST of mRNA_H-paniculata_contig44044.11156.1 vs. uniprot
Match: A0A6H5L715_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L715_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 6.360e-21
Identity = 87/289 (30.10%), Postives = 130/289 (44.98%), Query Frame = 1
Query:   97 RCFICRSKDHLQRDCPN---VYCRRCGKRGHESIASYITSTSTIGKEEVLSMDCEGLEYREV-----------------GGMETS-----ICDNGATKHMTHNSDFLSDYQQCNGHVRLADGNR-LPIEGVGMLFLQFRFDSEVVLMKLTQVAFVPLLSHHLLSL--------GKFSDVGHEYRCSREGLTLKQGERFGSLDGMRGSRV-CPEDSALATIALSRLPIHSATHMDINVFHCSFGHANEFLLRETAKQRGVVLTGELRVCSGCTMAKGLRKPISKAPAPRA 858
            RCF C  K H    C     + C +C   GH+   S  +S   +   E+  +D   L+  E                  GG+E +     + D GAT HM  +++   +Y +C+  + +A G +   I G G + +          + L +VA VP L+++L+SL        G+ +    E      G        +G L    G R+    + A A IA      +  T +DIN FHC+ GH++E LL+ TAKQ+GV L G+LR C GC+ AKGL KPI    + RA
Sbjct:  773 RCFRCGEKGHQAAACTKPEPLRCEKCLGYGHDK--SKCSSEQAVLAVELPVLDATALDVAEEALVVRDFTGEWNRVVDRGGVEQARQERFVADTGATNHMFPSANAFENYHECDRRLSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSLTALLKQTKGRLAADERELEVFVGGGESVYFPLWGDLFVQTGHRIDSGRELACAIIAPGNAKANR-TPVDINDFHCAHGHSHEVLLKNTAKQQGVTLVGQLRECMGCSTAKGLSKPIPNRTSTRA 1058          
BLAST of mRNA_H-paniculata_contig44044.11156.1 vs. uniprot
Match: A0A6H5JNN1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN1_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 6.600e-21
Identity = 87/289 (30.10%), Postives = 130/289 (44.98%), Query Frame = 1
Query:   97 RCFICRSKDHLQRDCPN---VYCRRCGKRGHESIASYITSTSTIGKEEVLSMDCEGLEYREV-----------------GGMETS-----ICDNGATKHMTHNSDFLSDYQQCNGHVRLADGNR-LPIEGVGMLFLQFRFDSEVVLMKLTQVAFVPLLSHHLLSL--------GKFSDVGHEYRCSREGLTLKQGERFGSLDGMRGSRV-CPEDSALATIALSRLPIHSATHMDINVFHCSFGHANEFLLRETAKQRGVVLTGELRVCSGCTMAKGLRKPISKAPAPRA 858
            RCF C  K H    C     + C +C   GH+   S  +S   +   E+  +D   L+  E                  GG+E +     + D GAT HM  +++   +Y +C+  + +A G +   I G G + +          + L +VA VP L+++L+SL        G+ +    E      G        +G L    G R+    + A A IA      +  T +DIN FHC+ GH++E LL+ TAKQ+GV L G+LR C GC+ AKGL KPI    + RA
Sbjct:  871 RCFRCGEKGHQAAACTKPEPLRCEKCLGYGHDK--SKCSSEQAVLAVELPVLDATALDVAEEALVVRDFTGEWNRVVDRGGVEQARQERFVADTGATNHMFPSANAFENYHECDRRLSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSLTALLKQTKGRLAADERELEVFVGGGESVYFPLWGDLFVQTGHRINSGRELACAIIAPGNAKANR-TPVDINDFHCAHGHSHEVLLKNTAKQQGVTLVGQLRECMGCSTAKGLSKPIPNRTSTRA 1156          
BLAST of mRNA_H-paniculata_contig44044.11156.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 3.630e-20
Identity = 83/243 (34.16%), Postives = 121/243 (49.79%), Query Frame = 1
Query:  322 THNSDFLSDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFVPLLSHHLLSLGKFSDVGHEYRCSREGLTL--KQGE-----RFGSLDGMRGSRVCPE-DSALATIALSRLPIHSATHMDINVFHCSFGHANEFLLRETAKQRGVVLTG-ELRVCSGCTMAKGLRKPISKAPAPRAVKILGLTYVDTCGLKGVLGVGGVRFMLIFRDSF*RKSTVYFMRSKSEVDRYLKQY 1023
            T  SD+    + C G     +  + P E   +        +EV  + +  +  VP +  +L+SL   ++ GH Y     GL L  K G+     + G L  + G +  PE D+A A I +      +AT  D+N FH S GHA+E LLR TAKQ+GV LTG  L  C+GC+MAKG  K + +    RAVK L   ++D  G      +GG  + LI R    R + V+F++ KSE    L+Q+
Sbjct:   98 TKESDYNPQCEHCLGWGHKKE--KCPTEAAVL--------AEVASVVVPLIXHVPGMDLNLISLTSLTEEGHTYAGKPGGLVLTTKAGKEVWFPQLGKLLSLWGYQTEPEVDTACAAIIVPG-EAKAATPTDLNEFHNSHGHAHERLLRLTAKQQGVELTGGPLLSCTGCSMAKGQVKAVQRFTDTRAVKKLFRVFIDLGGRMQFHSIGGRWYTLIIRCDATRWTRVFFLKRKSEAADALEQF 329          
BLAST of mRNA_H-paniculata_contig44044.11156.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 7.160e-20
Identity = 86/288 (29.86%), Postives = 130/288 (45.14%), Query Frame = 1
Query:   97 RCFICRSKDHLQRDCPN---VYCRRCGKRGHESIASYITSTSTIGKEEVLSMDCEGLEYREV-----------------GGMETS-----ICDNGATKHMTHNSDFLSDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFVPLLSHHLLSL--------GKFSDVGHEYRCSREGLTLKQGERFGSLDGMRGSRV-CPEDSALATIALSRLPIHSATHMDINVFHCSFGHANEFLLRETAKQRGVVLTGELRVCSGCTMAKGLRKPISKAPAPRA 858
            RCF C  K H    C     + C +C   GH+   S  +S   +   E+  +D   L+  E                  GG+E +     + D GAT HM  +++   +Y +C+  + +A G +          +  R  +  +L+K  +VA VP L+++L+SL        G+ +    E      G        +G L    G R+    + A A IA      +  T +DIN FHC+ GH++E LL+ TAKQ+GV L G+LR C GC+ AKGL KPI    + RA
Sbjct:  792 RCFRCGEKGHQAAACTKPEPLRCEKCLGYGHDK--SKCSSEQAVLAVELPVLDATALDVAEEALVVRDFTGEWNRVVDRGGVEQARQERFVADTGATNHMFPSANAFENYNECDRRLSVAAGKQ------AFAIVGSRVGTIDLLLK--RVAHVPELNYNLVSLTALLKQTKGRLAADERELEVFVGGGESVYFPLWGDLFVQTGHRIDSGRELACAIIAPGNAKANR-TPVDINDFHCAHGHSHEVLLKNTAKQQGVTLVGQLRECMGCSTAKGLSKPIPNRTSTRA 1068          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44044.11156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L175_9PHAE8.920e-3231.50Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSM6_9PHAE2.580e-2432.14CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5K0G7_9PHAE1.510e-2332.95Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JBA7_9PHAE3.760e-2332.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE1.270e-2231.85Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4H5_9PHAE5.980e-2130.10CCHC-type domain-containing protein n=11 Tax=Ectoc... [more]
A0A6H5L715_9PHAE6.360e-2130.10CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JNN1_9PHAE6.600e-2130.10CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JKS3_9PHAE3.630e-2034.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LGF7_9PHAE7.160e-2029.86Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44044contigH-paniculata_contig44044:16..1052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score92.8
Seed ortholog evalue2.3e-16
Seed eggNOG ortholog6334.EFV48956
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons2
Model size1023
Cds size720
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44044.11156.1prot_H-paniculata_contig44044.11156.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44044 79..812 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930330.6724315-UTR-H-paniculata_contig44044:15..781622930330.6724315-UTR-H-paniculata_contig44044:15..78Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44044 16..78 -
1691481244.7014089-UTR-H-paniculata_contig44044:15..781691481244.7014089-UTR-H-paniculata_contig44044:15..78Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44044 16..78 -
1622930330.7156463-UTR-H-paniculata_contig44044:812..10521622930330.7156463-UTR-H-paniculata_contig44044:812..1052Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44044 813..1052 -
1691481244.736019-UTR-H-paniculata_contig44044:812..10521691481244.736019-UTR-H-paniculata_contig44044:812..1052Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44044 813..1052 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930330.6871226-CDS-H-paniculata_contig44044:78..4561622930330.6871226-CDS-H-paniculata_contig44044:78..456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44044 79..456 -
1691481244.7166543-CDS-H-paniculata_contig44044:78..4561691481244.7166543-CDS-H-paniculata_contig44044:78..456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44044 79..456 -
1622930330.702381-CDS-H-paniculata_contig44044:470..8121622930330.702381-CDS-H-paniculata_contig44044:470..812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44044 471..812 -
1691481244.7277424-CDS-H-paniculata_contig44044:470..8121691481244.7277424-CDS-H-paniculata_contig44044:470..812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44044 471..812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44044.11156.1

>prot_H-paniculata_contig44044.11156.1 ID=prot_H-paniculata_contig44044.11156.1|Name=mRNA_H-paniculata_contig44044.11156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=240bp
MDCEGLEYREVGGMETSICDNGATKHMTHNSDFLSDYQQCNGHVRLADGN
RLPIEGVGMLFLQFRFDSEVVLMKLTQVAFVPLLSHHLLSLGKFSDVGHE
YRCSREGLTLKQGERFGSLDGMRGSRVCPEDSALATIALSRLPIHSATHM
DINVFHCSFGHANEFLLRETAKQRGVVLTGELRVCSGCTMAKGLRKPISK
APAPRAVKILGLTYVDTCGLKGVLGVGGVRFMLIFRDSF*
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mRNA from alignment at H-paniculata_contig44044:16..1052-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44044.11156.1 ID=mRNA_H-paniculata_contig44044.11156.1|Name=mRNA_H-paniculata_contig44044.11156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1037bp|location=Sequence derived from alignment at H-paniculata_contig44044:16..1052- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACATCGGCGGTACATTTAGTAAATCCGCTGCCACCGATCGTTCTAGCAA CAGCACCAAGGGTGGCCAGCCCGCTGGCACCAAGAACAAGCAGCCAAGGT GCTTCATCTGCCGCTCCAAGGATCACCTTCAACGGGACTGCCCCAACGTG TACTGTCGGCGATGTGGTAAGCGTGGTCACGAGTCCATTGCGTCATACAT CACGTCGACTTCCACCATAGGCAAGGAAGAGGTTTTGTCTATGGACTGTG AGGGGTTAGAATATCGTGAGGTGGGAGGGATGGAGACCTCGATTTGTGAT AATGGTGCAACGAAACACATGACCCATAATTCAGATTTTCTTTCTGATTA CCAGCAATGTAATGGGCATGTACGCCTTGCAGATGGTAACCGTCTCCCGA TCGAAGGAGTTGGCATGCTGTTCCTTCAATTTCGATTTGACTCCGAGGTT GTTTTGATGAAGTTAACTCAGGTTGCGTTCGTACCACTCCTCAGTCATCA CCTCCTATCTCTCGGGAAATTCTCGGACGTTGGTCATGAATATAGGTGTT CGCGTGAAGGGCTAACCTTAAAACAGGGAGAGGTCTGAGTGCTGAGCGAT TTGGTAGCCTTGACGGGATGCGAGGGTCGCGAGTTTGTCCCGAAGATAGT GCGCTTGCAACGATAGCCCTGTCCCGCCTGCCGATACATTCCGCTACCCA CATGGACATAAATGTTTTTCACTGCTCCTTTGGTCATGCGAACGAGTTCC TGCTTCGGGAGACGGCGAAGCAGCGTGGCGTGGTGTTGACTGGAGAGCTG CGGGTGTGCAGCGGGTGTACGATGGCAAAGGGTCTGCGGAAGCCGATTAG CAAGGCGCCTGCTCCCAGAGCAGTTAAGATACTGGGCCTCACTTATGTCG ATACGTGTGGTCTGAAGGGAGTTTTGGGGGTCGGGGGGGTTCGTTTCATG TTGATTTTTAGGGACAGTTTCTAACGTAAGTCAACCGTTTACTTCATGCG AAGTAAAAGTGAGGTAGATAGGTACCTCAAACAATAC
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Coding sequence (CDS) from alignment at H-paniculata_contig44044:16..1052-

>mRNA_H-paniculata_contig44044.11156.1 ID=mRNA_H-paniculata_contig44044.11156.1|Name=mRNA_H-paniculata_contig44044.11156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1440bp|location=Sequence derived from alignment at H-paniculata_contig44044:16..1052- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACTGTGAGGGGTTAGAATATCGTGAGGTGGGAGGGATGGAGACCTC
GATTTGTGATAATGGTGCAACGAAACACATGACCCATAATTCAGATTTTC
TTTCTGATTACCAGCAATGTAATGGGCATGTACGCCTTGCAGATGGTAAC
CGTCTCCCGATCGAAGGAGTTGGCATGCTGTTCCTTCAATTTCGATTTGA
CTCCGAGGTTGTTTTGATGAAGTTAACTCAGGTTGCGTTCGTACCACTCC
TCAGTCATCACCTCCTATCTCTCGGGAAATTCTCGGACGTTGGTCATGAA
TATAGGTGTTCGCGTGAAGGGCTAACCTTAAAACAGGGAGAGATGGACTG
TGAGGGGTTAGAATATCGTGAGGTGGGAGGGATGGAGACCTCGATTTGTG
ATAATGGTGCAACGAAACACATGACCCATAATTCAGATTTTCTTTCTGAT
TACCAGCAATGTAATGGGCATGTACGCCTTGCAGATGGTAACCGTCTCCC
GATCGAAGGAGTTGGCATGCTGTTCCTTCAATTTCGATTTGACTCCGAGG
TTGTTTTGATGAAGTTAACTCAGGTTGCGTTCGTACCACTCCTCAGTCAT
CACCTCCTATCTCTCGGGAAATTCTCGGACGTTGGTCATGAATATAGGTG
TTCGCGTGAAGGGCTAACCTTAAAACAGGGAGAGCGATTTGGTAGCCTTG
ACGGGATGCGAGGGTCGCGAGTTTGTCCCGAAGATAGTGCGCTTGCAACG
ATAGCCCTGTCCCGCCTGCCGATACATTCCGCTACCCACATGGACATAAA
TGTTTTTCACTGCTCCTTTGGTCATGCGAACGAGTTCCTGCTTCGGGAGA
CGGCGAAGCAGCGTGGCGTGGTGTTGACTGGAGAGCTGCGGGTGTGCAGC
GGGTGTACGATGGCAAAGGGTCTGCGGAAGCCGATTAGCAAGGCGCCTGC
TCCCAGAGCAGTTAAGATACTGGGCCTCACTTATGTCGATACGTGTGGTC
TGAAGGGAGTTTTGGGGGTCGGGGGGGTTCGTTTCATGTTGATTTTTAGG
GACAGTTTCTAACGATTTGGTAGCCTTGACGGGATGCGAGGGTCGCGAGT
TTGTCCCGAAGATAGTGCGCTTGCAACGATAGCCCTGTCCCGCCTGCCGA
TACATTCCGCTACCCACATGGACATAAATGTTTTTCACTGCTCCTTTGGT
CATGCGAACGAGTTCCTGCTTCGGGAGACGGCGAAGCAGCGTGGCGTGGT
GTTGACTGGAGAGCTGCGGGTGTGCAGCGGGTGTACGATGGCAAAGGGTC
TGCGGAAGCCGATTAGCAAGGCGCCTGCTCCCAGAGCAGTTAAGATACTG
GGCCTCACTTATGTCGATACGTGTGGTCTGAAGGGAGTTTTGGGGGTCGG
GGGGGTTCGTTTCATGTTGATTTTTAGGGACAGTTTCTAA
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