mRNA_H-paniculata_contig44020.11153.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44020.11153.1
Unique NamemRNA_H-paniculata_contig44020.11153.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44020.11153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44020contigH-paniculata_contig44020:140..1024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score109.4
Seed ortholog evalue2.9e-21
Seed eggNOG ortholog3711.Bra037550.1-P
Hectar predicted targeting categoryother localisation
EggNOG OGs2EVC0@1,2SXCC@2759,3820J@33090,3GRD1@35493
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size885
Cds size885
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930330.2210085-CDS-H-paniculata_contig44020:139..10241622930330.2210085-CDS-H-paniculata_contig44020:139..1024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44020 140..1024 -
1691481244.5013142-CDS-H-paniculata_contig44020:139..10241691481244.5013142-CDS-H-paniculata_contig44020:139..1024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44020 140..1024 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44020.11153.1prot_H-paniculata_contig44020.11153.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44020 140..1024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44020.11153.1

>prot_H-paniculata_contig44020.11153.1 ID=prot_H-paniculata_contig44020.11153.1|Name=mRNA_H-paniculata_contig44020.11153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=295bp
AFLTEINGTDTYDAYTTAVGSLSRANYMQVPLDMPETSFDANLVGTAQFK
ANFNAQHIMALYCVNKAVTPQAEYSKEFALLRTCAYINGFVPTTEAKEDT
CDYPVEVLQALYDADNVWISANWALYSQAGLFLLYASEHVFRTMGHHYLS
GDATTYNDKYSQFLNACLVSEIVMIANPTTRYYDALHWVSYEQVMATYRV
SEVMDRMPNAIRIRIGSTPAGTALVTTTAATLASIEKVLKLKDLETYSGF
NIALVRDVANEIRSHPPKFHIHPQAYGLGRLTHDEAARLAEAKQA
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mRNA from alignment at H-paniculata_contig44020:140..1024-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44020.11153.1 ID=mRNA_H-paniculata_contig44020.11153.1|Name=mRNA_H-paniculata_contig44020.11153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=885bp|location=Sequence derived from alignment at H-paniculata_contig44020:140..1024- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTTTCTCACGGAGATCAATGGGACTGATACGTACGATGCATACACAAC
TGCAGTCGGGTCTCTGTCCAGGGCTAACTATATGCAGGTCCCCTTAGATA
TGCCCGAGACGTCGTTCGATGCCAACCTTGTAGGGACAGCTCAGTTCAAG
GCGAATTTCAATGCTCAGCATATAATGGCCCTCTACTGTGTCAACAAGGC
AGTCACTCCCCAGGCCGAGTATTCGAAGGAATTCGCTTTGCTTAGAACAT
GTGCTTACATCAACGGGTTCGTGCCAACTACAGAGGCCAAGGAGGACACG
TGTGACTACCCTGTTGAGGTTCTACAGGCTCTCTACGACGCAGATAATGT
CTGGATCTCAGCAAACTGGGCACTCTACTCTCAAGCTGGACTCTTCCTCC
TGTATGCATCAGAACATGTCTTTCGGACTATGGGGCACCACTACCTCTCT
GGCGACGCTACGACTTACAACGACAAGTACTCCCAGTTCCTCAATGCGTG
TCTAGTGAGTGAAATTGTGATGATCGCAAATCCTACTACCCGTTACTACG
ATGCATTACACTGGGTCTCCTATGAGCAAGTGATGGCGACCTACAGGGTT
TCAGAAGTTATGGATCGTATGCCGAATGCGATCAGGATCAGGATCGGGTC
TACTCCAGCAGGTACAGCTCTAGTTACGACGACGGCGGCTACTCTGGCGA
GCATTGAGAAAGTGCTTAAACTTAAGGATCTCGAGACATATTCTGGTTTC
AACATAGCTCTGGTTCGAGATGTGGCAAATGAAATCAGGTCCCATCCCCC
TAAGTTTCACATTCATCCACAGGCGTACGGGTTAGGTAGATTGACACATG
ATGAGGCAGCGAGACTGGCAGAGGCGAAACAGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig44020:140..1024-

>mRNA_H-paniculata_contig44020.11153.1 ID=mRNA_H-paniculata_contig44020.11153.1|Name=mRNA_H-paniculata_contig44020.11153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1770bp|location=Sequence derived from alignment at H-paniculata_contig44020:140..1024- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTTTCTCACGGAGATCAATGGGACTGATACGTACGATGCATACACAAC
TGCAGTCGGGTCTCTGTCCAGGGCTAACTATATGCAGGTCCCCTTAGATA
TGCCCGAGACGTCGTTCGATGCCAACCTTGTAGGGACAGCTCAGTTCAAG
GCGAATTTCAATGCTCAGCATATAATGGCCCTCTACTGTGTCAACAAGGC
AGTCACTCCCCAGGCCGAGTATTCGAAGGAATTCGCTTTGCTTAGAACAT
GTGCTTACATCAACGGGTTCGTGCCAACTACAGAGGCCAAGGAGGACACG
TGTGACTACCCTGTTGAGGTTCTACAGGCTCTCTACGACGCAGATAATGT
CTGGATCTCAGCAAACTGGGCACTCTACTCTCAAGCTGGACTCTTCCTCC
TGTATGCATCAGAACATGTCTTTCGGACTATGGGGCACCACTACCTCTCT
GGCGACGCTACGACTTACAACGACAAGTACTCCCAGTTCCTCAATGCGTG
TCTAGTGAGTGAAATTGTGATGATCGCAAATCCTACTACCCGTTACTACG
ATGCATTACACTGGGTCTCCTATGAGCAAGTGATGGCGACCTACAGGGTT
TCAGAAGTTATGGATCGTATGCCGAATGCGATCAGGATCAGGATCGGGTC
TACTCCAGCAGGTACAGCTCTAGTTACGACGACGGCGGCTACTCTGGCGA
GCATTGAGAAAGTGCTTAAACTTAAGGATCTCGAGACATATTCTGGTTTC
AACATAGCTCTGGTTCGAGATGTGGCAAATGAAATCAGGTCCCATCCCCC
TAAGTTTCACATTCATCCACAGGCGTACGGGTTAGGTAGATTGACACATG
ATGAGGCAGCGAGACTGGCAGAGGCGAAACAGGCGGCGTTTCTCACGGAG
ATCAATGGGACTGATACGTACGATGCATACACAACTGCAGTCGGGTCTCT
GTCCAGGGCTAACTATATGCAGGTCCCCTTAGATATGCCCGAGACGTCGT
TCGATGCCAACCTTGTAGGGACAGCTCAGTTCAAGGCGAATTTCAATGCT
CAGCATATAATGGCCCTCTACTGTGTCAACAAGGCAGTCACTCCCCAGGC
CGAGTATTCGAAGGAATTCGCTTTGCTTAGAACATGTGCTTACATCAACG
GGTTCGTGCCAACTACAGAGGCCAAGGAGGACACGTGTGACTACCCTGTT
GAGGTTCTACAGGCTCTCTACGACGCAGATAATGTCTGGATCTCAGCAAA
CTGGGCACTCTACTCTCAAGCTGGACTCTTCCTCCTGTATGCATCAGAAC
ATGTCTTTCGGACTATGGGGCACCACTACCTCTCTGGCGACGCTACGACT
TACAACGACAAGTACTCCCAGTTCCTCAATGCGTGTCTAGTGAGTGAAAT
TGTGATGATCGCAAATCCTACTACCCGTTACTACGATGCATTACACTGGG
TCTCCTATGAGCAAGTGATGGCGACCTACAGGGTTTCAGAAGTTATGGAT
CGTATGCCGAATGCGATCAGGATCAGGATCGGGTCTACTCCAGCAGGTAC
AGCTCTAGTTACGACGACGGCGGCTACTCTGGCGAGCATTGAGAAAGTGC
TTAAACTTAAGGATCTCGAGACATATTCTGGTTTCAACATAGCTCTGGTT
CGAGATGTGGCAAATGAAATCAGGTCCCATCCCCCTAAGTTTCACATTCA
TCCACAGGCGTACGGGTTAGGTAGATTGACACATGATGAGGCAGCGAGAC
TGGCAGAGGCGAAACAGGCG
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