mRNA_H-paniculata_contig4402.11152.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4402.11152.1
Unique NamemRNA_H-paniculata_contig4402.11152.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4402.11152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4402contigH-paniculata_contig4402:7695..8991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size455
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930330.1356962-CDS-H-paniculata_contig4402:7694..78851622930330.1356962-CDS-H-paniculata_contig4402:7694..7885Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4402 7695..7885 -
1691481244.474495-CDS-H-paniculata_contig4402:7694..78851691481244.474495-CDS-H-paniculata_contig4402:7694..7885Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4402 7695..7885 -
1622930330.1526659-CDS-H-paniculata_contig4402:8729..89911622930330.1526659-CDS-H-paniculata_contig4402:8729..8991Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4402 8730..8991 -
1691481244.485519-CDS-H-paniculata_contig4402:8729..89911691481244.485519-CDS-H-paniculata_contig4402:8729..8991Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4402 8730..8991 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4402.11152.1prot_H-paniculata_contig4402.11152.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4402 7695..8991 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4402.11152.1

>prot_H-paniculata_contig4402.11152.1 ID=prot_H-paniculata_contig4402.11152.1|Name=mRNA_H-paniculata_contig4402.11152.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
DLGRREGRGRYGHPGGDGEEGVGAHPTERGMLSGNTANATRGGDGGGGGG
HGEEGEKIFLTSSRLKTHHAAVAGKRGRNRPPPEEEQGLEDTTPPTPPPP
PRDRPRNTVPSSASERQTEGQRAAAQRLRAWQERRRRSTIDQGAEVGAAG
G
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mRNA from alignment at H-paniculata_contig4402:7695..8991-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4402.11152.1 ID=mRNA_H-paniculata_contig4402.11152.1|Name=mRNA_H-paniculata_contig4402.11152.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1297bp|location=Sequence derived from alignment at H-paniculata_contig4402:7695..8991- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATCTTGGCAGGCGAGAGGGTCGAGGTCGATATGGTCACCCCGGTGGGGA
TGGGGAAGAAGGGGTAGGGGCGCACCCGACGGAAAGGGGGATGTTGTCGG
GGAACACTGCCAACGCGACTAGAGGCGGTGACGGTGGCGGTGGCGGTGGC
CATGGGGAGGAGGGTGAAAAAATATTTCTGACGTCATCGAGGTTGAAGAC
TCATCACGCGGCAGTTGCTGGGAAGCGCGGCCGAAATCGTCCCCCACCTG
AAGAGGAACAAGGTTGGTCTACTCCTAGTTTTCGCAGGGTAGAGGTATAT
GTTTATGTGTGTGTATAAATATATATATTGAGCGAGGGGTAAATTTTTTG
GTGTAGTCCTTTCTTGCTCGAGAAAGGCAATTGTCCTGTAGTGTACTATC
CAAACAGCACAACATTATGTCTATCTAATGACAACTGTAAATCAGGGAGA
TCTTTCAACGACACAATTTTTGGTGTTCCAAGCACCCTTATTTTTCTAGA
AAAAACGTTACAAAAGAATTTGATCACTCAGGTCGTTTCATGTACCCTGC
AGTACGATACGTACGATACGTGCTAAATTTACTTGCTGGCCACCGACTAT
ACCCGTGTGATGTGTTGTCACCGGAACCACCATCACGTACCGCAGTTTGC
AAAGTCGCACTATAGGGTATATAGCCCCGGGTGGTCGCGTTTTTTTTTTT
TTCTAATTTAGAAGCACAAAAGAGTCTTTGCCGTCGCTAGAGCACACGTC
TATCTGTGACATATATCGACGAGATCAGACGTTATCGTAATGGTGTTCAG
TTTATATAAATTGGACAACAAACCATAATATGAACCATGCAATTTCCTTC
CTTGTAACTACAAGTAGGCAGGGCAAGGCTAATGAATACGCCAGTGGCAT
GCCTAATTCACACCCCCTCAAACTAGTTCGTGTCACTTGACACGAAGAAA
ACACCTGGACGGAAAATAGTAACTATTCCGAGAGCAATGTAATCATAGCT
GTCATCATTACCGCATTAATTAAAATCCATACACACACACACACACATAT
ATATATATTTCTGAACACACAAAAAAAAGCTTAAACAAAAACTACGCCAC
CTCCAGGACTTGAAGACACAACGCCGCCGACACCACCACCACCGCCGAGA
GATCGGCCAAGAAACACAGTTCCGTCTTCCGCTAGCGAGCGCCAAACAGA
GGGGCAGAGAGCAGCAGCACAGCGGCTCAGGGCATGGCAAGAGCGAAGAA
GGCGGAGTACTATCGACCAAGGGGCAGAGGTGGGGGCTGCGGGAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4402:7695..8991-

>mRNA_H-paniculata_contig4402.11152.1 ID=mRNA_H-paniculata_contig4402.11152.1|Name=mRNA_H-paniculata_contig4402.11152.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig4402:7695..8991- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATCTTGGCAGGCGAGAGGGTCGAGGTCGATATGGTCACCCCGGTGGGGA
TGGGGAAGAAGGGGTAGGGGCGCACCCGACGGAAAGGGGGATGTTGTCGG
GGAACACTGCCAACGCGACTAGAGGCGGTGACGGTGGCGGTGGCGGTGGC
CATGGGGAGGAGGGTGAAAAAATATTTCTGACGTCATCGAGGTTGAAGAC
TCATCACGCGGCAGTTGCTGGGAAGCGCGGCCGAAATCGTCCCCCACCTG
AAGAGGAACAAGGATCTTGGCAGGCGAGAGGGTCGAGGTCGATATGGTCA
CCCCGGTGGGGATGGGGAAGAAGGGGTAGGGGCGCACCCGACGGAAAGGG
GGATGTTGTCGGGGAACACTGCCAACGCGACTAGAGGCGGTGACGGTGGC
GGTGGCGGTGGCCATGGGGAGGAGGGTGAAAAAATATTTCTGACGTCATC
GAGGTTGAAGACTCATCACGCGGCAGTTGCTGGGAAGCGCGGCCGAAATC
GTCCCCCACCTGAAGAGGAACAAGGACTTGAAGACACAACGCCGCCGACA
CCACCACCACCGCCGAGAGATCGGCCAAGAAACACAGTTCCGTCTTCCGC
TAGCGAGCGCCAAACAGAGGGGCAGAGAGCAGCAGCACAGCGGCTCAGGG
CATGGCAAGAGCGAAGAAGGCGGAGTACTATCGACCAAGGGGCAGAGGTG
GGGGCTGCGGGAGGGGACTTGAAGACACAACGCCGCCGACACCACCACCA
CCGCCGAGAGATCGGCCAAGAAACACAGTTCCGTCTTCCGCTAGCGAGCG
CCAAACAGAGGGGCAGAGAGCAGCAGCACAGCGGCTCAGGGCATGGCAAG
AGCGAAGAAGGCGGAGTACTATCGACCAAGGGGCAGAGGTGGGGGCTGCG
GGAGGG
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