mRNA_H-paniculata_contig440.11150.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig440.11150.1
Unique NamemRNA_H-paniculata_contig440.11150.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig440.11150.1 vs. uniprot
Match: D7FZM5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM5_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 9.910e-19
Identity = 40/66 (60.61%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:  169 LSQRGDWDNFRNDLFDGEPMRFPAAGGWVAPRQGLLCVDYVSPFHPAYMA-GE----SPMSDEDFQ 351
            L+  GDWDNFRN + DG P  +P  GGWV P QGLLC+DYVSPF PAYM  GE    SPM+D++F+
Sbjct:  964 LADNGDWDNFRNGMLDGNPFVYPKGGGWVPPPQGLLCIDYVSPFEPAYMEDGEETSPSPMTDQEFR 1029
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BLAST of mRNA_H-paniculata_contig440.11150.1 vs. uniprot
Match: A0A6H5L0P0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0P0_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.590e-12
Identity = 34/57 (59.65%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:  196 FRNDLFDGEPMRFPAAGGWVAPRQGLLCVDYVSPFHPAYM-AGE----SPMSDEDFQ 351
            FRN   DG P  +P  GGWV P QGLLC+DYVSPF PAY  AGE    SPM+D++F+
Sbjct:  832 FRNGTLDGNPFVYPKGGGWVPPPQGLLCMDYVSPFEPAYTEAGEETSPSPMTDQEFR 888
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BLAST of mRNA_H-paniculata_contig440.11150.1 vs. uniprot
Match: A0A5D6XPE9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XPE9_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.300e-8
Identity = 30/68 (44.12%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:  154 AGIQDLSQRGDWDNFRNDLFDGEPMRFPAAGGWVAPRQGLLCVDYVSPFHPAYMAGESPMSDEDFQRL 357
            +G  D SQ G+W+NFRN+  DG+P+   +A   V PR+G L  DYVS   P    G +PMS   F++L
Sbjct: 1112 SGRADTSQHGNWENFRNEELDGQPVVLTSAFFLVLPRRGKLAFDYVSTARPK--RGTAPMSARRFEQL 1177
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BLAST of mRNA_H-paniculata_contig440.11150.1 vs. uniprot
Match: T0QSD8_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QSD8_SAPDV)

HSP 1 Score: 58.2 bits (139), Expect = 2.120e-7
Identity = 30/64 (46.88%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:  166 DLSQRGDWDNFRNDLFDGEPMRFPAAGGWVAPRQGLLCVDYVSPFHPAYMAGESPMSDEDFQRL 357
            D SQ G+W+NFRN+LFDG+P+   +A     P +G L  DYVS   P    G  PMS   FQ+L
Sbjct: 1062 DTSQHGNWENFRNELFDGKPVVLTSAFFQNVPSKGKLEFDYVSTSRPK--RGTKPMSTRRFQQL 1123
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BLAST of mRNA_H-paniculata_contig440.11150.1 vs. uniprot
Match: A0A7S1XZJ5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZJ5_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.320e-6
Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:  154 AGIQDLSQRGDWDNFRNDLFDGEPMRFPAAGGWVAPRQGLLCVDYVSPFHPAYMAGESPMSDEDFQRL 357
            +G  D SQ+G+W+NFRN+  +GEP+   +A     P++G L  DYVS   P     E  +S++ F RL
Sbjct:  229 SGRHDTSQKGNWENFRNETLNGEPITLNSAWSLKIPKEGKLSFDYVSTTRPRRSIRE--VSEKRFARL 294
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BLAST of mRNA_H-paniculata_contig440.11150.1 vs. uniprot
Match: A0A8K1CIN9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIN9_PYTOL)

HSP 1 Score: 55.5 bits (132), Expect = 1.860e-6
Identity = 29/68 (42.65%), Postives = 37/68 (54.41%), Query Frame = 1 
Query:  154 AGIQDLSQRGDWDNFRNDLFDGEPMRFPAAGGWVAPRQGLLCVDYVSPFHPAYMAGESPMSDEDFQRL 357
            +G  D SQ G+W+NFRN+L DGE      A   + P  G L  DYVS   P    G  P+S+  FQ+L
Sbjct: 1083 SGRGDTSQHGNWENFRNELLDGECFVLTTAFFHMLPTSGKLSFDYVSTTRPK--RGTVPLSERRFQQL 1148
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BLAST of mRNA_H-paniculata_contig440.11150.1 vs. uniprot
Match: A0A1W0A877_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A877_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.540e-6
Identity = 28/64 (43.75%), Postives = 37/64 (57.81%), Query Frame = 1 
Query:  166 DLSQRGDWDNFRNDLFDGEPMRFPAAGGWVAPRQGLLCVDYVSPFHPAYMAGESPMSDEDFQRL 357
            D SQ G+W+NFRN+LF+G+P+   +      P +G L  DYVS   P    G  PMS   FQ+L
Sbjct: 1058 DTSQHGNWENFRNELFEGKPIILTSTFFQNIPNKGKLEFDYVSTSRPK--RGTKPMSTRRFQQL 1119
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BLAST of mRNA_H-paniculata_contig440.11150.1 vs. uniprot
Match: A0A6H5J730_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J730_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.480e-5
Identity = 23/55 (41.82%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:  160 IQDLSQRGDWDNFRNDLFDGEPMRFPAAGGWVAPRQGLLCVDYVSPFHPAYMAGE 324
            + D SQ+GDWDN RN+  +G+P R       V P+ G L +DYVS   P + +G+
Sbjct:   13 VFDASQKGDWDNTRNETVNGKPYRLKGTILEVLPQAGTLEIDYVSTSRPPFRSGQ 67
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BLAST of mRNA_H-paniculata_contig440.11150.1 vs. uniprot
Match: A0A1V9ZMY6_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZMY6_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.630e-5
Identity = 26/62 (41.94%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:  172 SQRGDWDNFRNDLFDGEPMRFPAAGGWVAPRQGLLCVDYVSPFHPAYMAGESPMSDEDFQRL 357
            SQ G+W+NFRN+++DG+P+   +      P +G L  DYVS   P    G  PMS   FQ+L
Sbjct: 1064 SQHGNWENFRNEVYDGKPVILTSTFFQSVPTKGKLEFDYVSTARPK--RGTKPMSTRRFQQL 1123
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig440.11150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FZM5_ECTSI9.910e-1960.61Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5L0P0_9PHAE1.590e-1259.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5D6XPE9_9STRA3.300e-844.12Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
T0QSD8_SAPDV2.120e-746.88Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A7S1XZJ5_9STRA1.320e-639.71Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A8K1CIN9_PYTOL1.860e-642.65Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1W0A877_9STRA2.540e-643.75Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A6H5J730_9PHAE1.480e-541.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1V9ZMY6_9STRA1.630e-541.94Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig440contigH-paniculata_contig440:14887..17456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.1
Seed ortholog evalue7.4e-16
Seed eggNOG ortholog2880.D7FZM5
KEGG koko:K17576
Hectar predicted targeting categoryother localisation
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Exons4
Model size357
Cds size357
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig440.11150.1prot_H-paniculata_contig440.11150.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig440 14887..17456 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930329.8007615-CDS-H-paniculata_contig440:14886..150061622930329.8007615-CDS-H-paniculata_contig440:14886..15006Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig440 14887..15006 +
1691481244.3314867-CDS-H-paniculata_contig440:14886..150061691481244.3314867-CDS-H-paniculata_contig440:14886..15006Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig440 14887..15006 +
1622930329.8188589-CDS-H-paniculata_contig440:16072..161291622930329.8188589-CDS-H-paniculata_contig440:16072..16129Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig440 16073..16129 +
1691481244.3467088-CDS-H-paniculata_contig440:16072..161291691481244.3467088-CDS-H-paniculata_contig440:16072..16129Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig440 16073..16129 +
1622930329.8373468-CDS-H-paniculata_contig440:16429..165581622930329.8373468-CDS-H-paniculata_contig440:16429..16558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig440 16430..16558 +
1691481244.3546767-CDS-H-paniculata_contig440:16429..165581691481244.3546767-CDS-H-paniculata_contig440:16429..16558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig440 16430..16558 +
1622930329.8546484-CDS-H-paniculata_contig440:17405..174561622930329.8546484-CDS-H-paniculata_contig440:17405..17456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig440 17406..17456 +
1691481244.362776-CDS-H-paniculata_contig440:17405..174561691481244.362776-CDS-H-paniculata_contig440:17405..17456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig440 17406..17456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig440.11150.1

>prot_H-paniculata_contig440.11150.1 ID=prot_H-paniculata_contig440.11150.1|Name=mRNA_H-paniculata_contig440.11150.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
MGTTSSRTRAAVTERLIGHDPCTEDAETLLEWLEPGERARLNMLERRVLQ
LAGIQDLSQRGDWDNFRNDLFDGEPMRFPAAGGWVAPRQGLLCVDYVSPF
HPAYMAGESPMSDEDFQRL
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mRNA from alignment at H-paniculata_contig440:14887..17456+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig440.11150.1 ID=mRNA_H-paniculata_contig440.11150.1|Name=mRNA_H-paniculata_contig440.11150.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2570bp|location=Sequence derived from alignment at H-paniculata_contig440:14887..17456+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAACGACTAGCTCTCGCACGAGGGCGGCAGTGACCGAGCGGTTGAT
TGGACACGACCCGTGCACGGAGGACGCGGAAACGCTGCTGGAGTGGCTTG
AGCCAGGAGAGAGGGCTAGGGTGAGCAATACAAAACAAGAAAAATGTACG
ATATGCGATATTTCGAGGGCTATAGTCGCTTTTTATCGATCGGTGGTTGC
ACAGTAGAAGTCGAGCGTCGTCTGTACTCGTGCCTCTTTTCTGGAACACC
CGTGCAGTCATCGCGGGAAGTTGTCGCTTATCGTTCGATGAGGGTCAACA
TTATCCAGCACTGACAAACACTTCAGCATGACTCCTTCATAGTTGCACTT
TTGCGAGACTTTGGCAAATGTGTTGTTGTCTCGGTGAAACGAAAATGGAG
GGCAAGCTACGGGATCGGTGATTCAAGTGTTGATATCCAGTTCCATCGTT
ATCGCTAGGAACAAACAACACCTTCCGTTCATCAGAAACGTTAAACGTGC
ATTTTGCTCTTTTATGCAGTCCCGGTCGCTTGTGTTATATTTTCCACAAC
CATATCTGCTGTCGGCGCACGGGCCAATACAAGATTCAAGCTGGTTCTAT
GGGTCAGCACCTGAGGTGGTTTAGCTCCAACAATCCAACTTGCCGTTACC
GGCTTCGCTTGGGGATACCATCGGAGCGATTAGCCGCTATCCGACTCGCT
GACGTGAGCATCATCATATATCCTAACTCTATATATTTTCTCCACACGCT
CGCTTTCGTTTTCGGGCTTGCCGTGACCTTTATCTCTAGGGCTTACGCTA
ACCAACTCGATAATATGTATTTCTGTATGACCGAGAGTAATATTCGAAAC
AGGTCCTCGGTCGTTGGACAGTCCACACGCGTAGCAGTACCAACCTCGAT
GTACCTTCGACGTTGGATTTTTCAACCACACCCCGCGACCTGTCTCGAGC
GTCCCGAAACAAGAAGATGCAGCCCTGGTGGCAGCCGAGCCGCCCCTTGC
CCACAGCAAGTCGACGTCGGCCCTATGGTAGTACCTCCACCCAACAAAAT
AGCTACTCGTGAGAGCCATGTCGCTGGAATCACGCCGAGCAAATAAGCCG
CAGGCGATTTTGTGGTGTCCACCGTCTTCAAGCTCGTATGGTTTATGTAC
CCTCGCGTTTCTCCCCCCTGGTCCACGCTCCACCAGCTAAACATGCTGGA
GAGACGGGTTCTACAGCTGGCGGGTATACAAGATTTGAGCCAGGTAAGTG
CTGCGAAGTCGGCAAGGTGCAGATTCTCAGGAACGGTCTGTGCGTATTTT
GATGTACGTATGCTACACCTAAGGAAAGAGGCTGAGAGGGAATTTGGAAT
ATACGGTACCCTCTAGACAGAGCGGAGTGGACCATGAAGCTTTGTAGCCC
CCTCTCACCCATAACTGGTACAAGACAAAGGGGGAAGACCTCTCTCGCGT
GACGTGTGGACGTGTGTAACACTGCCACCAATGGTAATGTTGTACTTCAC
CAATCCCACGATTCCCCGTCTGTTGTCTGTCTCCCGCTCGCAGAGGGGTG
ACTGGGACAACTTTCGCAACGACTTGTTCGACGGAGAGCCGATGCGTTTC
CCTGCTGCTGGTGGCTGGGTCGCCCCCAGGCAGGGCTTGCTGTGCGTTGA
CTACGTCTCGCCGTTTCATCCAGTGAGCACACTTGATCGGCGATTGATGT
TGTCAACTAGTGAGGGCCGGTACACACGAGGTCTTTCTCTGGCCCTCCCA
CACGTTCGGTCCATTCGTTTGACAGCTTTTTTCCCCTTTTTCCCGAAAAC
CGGAATCGCGCGTGGAGAGCAACTCAACACTGCGAAAAATAGAGACAACA
TTTTACGTTACTTGACAGTCAAAATTTTGACACGTTTTCTCGTTTTTCGA
GCTGCTAAAATCGAATTTCGTTTTTAGCTAAATAGAAAAAGACCCCCATC
TGCGACGAGCAAACTGCCGAGTGGATCTCCCATTCCTCGATCTCGTTTTA
TCCACGAGGTGTCGCTTTGGCACAATAATCCGAATGGAGCGATTAGTACC
TTACTCAGTACTCGTAGCAACGTCAATAACTCAAGTACGACACATTTGTT
TTTATGAAATCTAGTATAGATACTCGCCGTAAGTTGTTGAGAATGGACAC
CCAGCATAGATCATCGTGCACAAACAAAGTATACCCGTCATTTTAGGCAG
TGTTATATTCCAGATGTACAGCAAGGTGTAGAAGAGTTTGGCTCTCGATG
TACATGAACAACTCCCCAGAGGACGAACGCTGCAAGTAATCTGTTGATGA
TACCGTGGCGCTGTATGTGGTCGCGACAATACAGCCTCCTGTGTCAACGG
TTTGCAGGCTGAGAATGTGACCGTCAACAACTCCGGTGTGCTCTATGTCC
GCCTTGTGCACAAGTCTTTGATCTTCTGGGCTAAGTGGATACCAAATCAC
CTCGGTATGTGCAACCGTTGCTGTCTCTGCCTTTTCCATTTGTCCCTCTC
CATGTGCGACGCGATCGAGGCGTACATGGCCGGAGAGTCGCCGATGAGTG
ATGAAGATTTCCAGCGTCTT
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Coding sequence (CDS) from alignment at H-paniculata_contig440:14887..17456+

>mRNA_H-paniculata_contig440.11150.1 ID=mRNA_H-paniculata_contig440.11150.1|Name=mRNA_H-paniculata_contig440.11150.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig440:14887..17456+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAACGACTAGCTCTCGCACGAGGGCGGCAGTGACCGAGCGGTTGAT
TGGACACGACCCGTGCACGGAGGACGCGGAAACGCTGCTGGAGTGGCTTG
AGCCAGGAGAGAGGGCTAGGATGGGAACGACTAGCTCTCGCACGAGGGCG
GCAGTGACCGAGCGGTTGATTGGACACGACCCGTGCACGGAGGACGCGGA
AACGCTGCTGGAGTGGCTTGAGCCAGGAGAGAGGGCTAGGCTAAACATGC
TGGAGAGACGGGTTCTACAGCTGGCGGGTATACAAGATTTGAGCCAGCTA
AACATGCTGGAGAGACGGGTTCTACAGCTGGCGGGTATACAAGATTTGAG
CCAGAGGGGTGACTGGGACAACTTTCGCAACGACTTGTTCGACGGAGAGC
CGATGCGTTTCCCTGCTGCTGGTGGCTGGGTCGCCCCCAGGCAGGGCTTG
CTGTGCGTTGACTACGTCTCGCCGTTTCATCCAAGGGGTGACTGGGACAA
CTTTCGCAACGACTTGTTCGACGGAGAGCCGATGCGTTTCCCTGCTGCTG
GTGGCTGGGTCGCCCCCAGGCAGGGCTTGCTGTGCGTTGACTACGTCTCG
CCGTTTCATCCAGCGTACATGGCCGGAGAGTCGCCGATGAGTGATGAAGA
TTTCCAGCGTCTTGCGTACATGGCCGGAGAGTCGCCGATGAGTGATGAAG
ATTTCCAGCGTCTT
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