mRNA_H-paniculata_contig440.11148.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig440.11148.1
Unique NamemRNA_H-paniculata_contig440.11148.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig440.11148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig440contigH-paniculata_contig440:3753..4367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930329.6477485-CDS-H-paniculata_contig440:3752..39881622930329.6477485-CDS-H-paniculata_contig440:3752..3988Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig440 3753..3988 +
1691481244.285389-CDS-H-paniculata_contig440:3752..39881691481244.285389-CDS-H-paniculata_contig440:3752..3988Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig440 3753..3988 +
1622930329.6665854-CDS-H-paniculata_contig440:4207..43671622930329.6665854-CDS-H-paniculata_contig440:4207..4367Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig440 4208..4367 +
1691481244.2931051-CDS-H-paniculata_contig440:4207..43671691481244.2931051-CDS-H-paniculata_contig440:4207..4367Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig440 4208..4367 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig440.11148.1prot_H-paniculata_contig440.11148.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig440 3753..4367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig440.11148.1

>prot_H-paniculata_contig440.11148.1 ID=prot_H-paniculata_contig440.11148.1|Name=mRNA_H-paniculata_contig440.11148.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
LSSTTSRIAAVTGNRGKQQGTVARNKTCFGSGATDKLNKRSIERLRSAGF
PRANIWDFGAQQSYSSHVMLPSNITPSMAFEESVEDHEAGEGDWHGISAA
AKSTEAFESRGTKATKREYELALHAFQGLAVE
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mRNA from alignment at H-paniculata_contig440:3753..4367+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig440.11148.1 ID=mRNA_H-paniculata_contig440.11148.1|Name=mRNA_H-paniculata_contig440.11148.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=615bp|location=Sequence derived from alignment at H-paniculata_contig440:3753..4367+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTATCTTCTACTACCAGTCGTATTGCTGCAGTCACGGGGAATAGGGGGAA
GCAGCAGGGAACAGTTGCACGTAACAAAACATGTTTTGGTTCTGGAGCGA
CAGATAAACTGAACAAGAGGAGCATCGAGAGATTAAGGAGCGCAGGCTTT
CCCAGAGCCAACATTTGGGATTTTGGGGCACAGCAAAGCTACTCGTCGCA
TGTTATGCTTCCATCGAACATCACACCATCTATGGCGTGAGTCTGCTTTG
TATAGAGACACTAAGCGTAAAAATAGCTCGGCAATGTAGGGAATTATGAT
GTTTGGATGTCGCACAGTGTGACAACGGCACTCACTCGTGGTCGTAAGCT
CTACTTATCATACGAATACATTGCCTTGGATGTATTAACAGTAGAGGCGA
AATACAATTGCCTGAACGCCTCCTTCACCTATGCCCCTGTCGCCATTTTT
TCTAGCTTCGAAGAATCAGTAGAAGACCATGAAGCTGGCGAAGGGGATTG
GCATGGTATCTCAGCAGCAGCGAAGTCCACTGAAGCGTTTGAATCTCGAG
GCACAAAGGCGACGAAAAGAGAATATGAATTGGCATTACACGCATTCCAG
GGCCTCGCTGTTGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig440:3753..4367+

>mRNA_H-paniculata_contig440.11148.1 ID=mRNA_H-paniculata_contig440.11148.1|Name=mRNA_H-paniculata_contig440.11148.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig440:3753..4367+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTATCTTCTACTACCAGTCGTATTGCTGCAGTCACGGGGAATAGGGGGAA
GCAGCAGGGAACAGTTGCACGTAACAAAACATGTTTTGGTTCTGGAGCGA
CAGATAAACTGAACAAGAGGAGCATCGAGAGATTAAGGAGCGCAGGCTTT
CCCAGAGCCAACATTTGGGATTTTGGGGCACAGCAAAGCTACTCGTCGCA
TGTTATGCTTCCATCGAACATCACACCATCTATGGCCTATCTTCTACTAC
CAGTCGTATTGCTGCAGTCACGGGGAATAGGGGGAAGCAGCAGGGAACAG
TTGCACGTAACAAAACATGTTTTGGTTCTGGAGCGACAGATAAACTGAAC
AAGAGGAGCATCGAGAGATTAAGGAGCGCAGGCTTTCCCAGAGCCAACAT
TTGGGATTTTGGGGCACAGCAAAGCTACTCGTCGCATGTTATGCTTCCAT
CGAACATCACACCATCTATGGCCTTCGAAGAATCAGTAGAAGACCATGAA
GCTGGCGAAGGGGATTGGCATGGTATCTCAGCAGCAGCGAAGTCCACTGA
AGCGTTTGAATCTCGAGGCACAAAGGCGACGAAAAGAGAATATGAATTGG
CATTACACGCATTCCAGGGCCTCGCTGTTGAGCTTCGAAGAATCAGTAGA
AGACCATGAAGCTGGCGAAGGGGATTGGCATGGTATCTCAGCAGCAGCGA
AGTCCACTGAAGCGTTTGAATCTCGAGGCACAAAGGCGACGAAAAGAGAA
TATGAATTGGCATTACACGCATTCCAGGGCCTCGCTGTTGAG
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