mRNA_H-paniculata_contig44.11147.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig44.11147.1 vs. uniprot
Match: D8LH53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH53_ECTSI) HSP 1 Score: 1077 bits (2786), Expect = 0.000e+0 Identity = 554/865 (64.05%), Postives = 660/865 (76.30%), Query Frame = 1
Query: 1 EQLVIPEYCKDPLHPDRPTVGWLRRRKKVKRVLTDSFVTRFFRLTCDESAMRYTFSYGKKAQDDAELMTKLNIDQGTRVLLSNTTPVPTPFALQIMVQKVSDFSFNDNEELQVVAQLGSQLQCTRAFDPRLTTTINSTLLLPVEQASLPYANASVMTSNIGWFGEEVDLMSNQSGDDKKAQFVSFFIGQGVDVNARTALGTCSIPFSQIRFGRQEDMTLTLEG-EGANGAQLFVGVTMRRLGQYKTAWPAVKTTVLQAKEVPGVDSNSEQHLWEGPCLVRTAPHGLELFSPTVNPDEPNKPVMTIDYYSVEAVTDVNESTLDVAVIIEKDSIQSDQTRRAN-----------GTLVSPGCPANPINSSPNPRQASLGLSPIKASGGSTFCPGIASPSAAFAFDSPPPPERPSMSRRGTFGMVNRKGKSLSP-KPPGKTIPWAERS-------PAMVTIPHDYFILRISPCPAETLKDLMGERQWMFQCRNMLLYITDKLHTQKMVRATN------IFNPSVREKLATASSETYKIIRTDMGEIIKTSDWRKARGIGFTERLSVYFAKLLESKAHPLWGFDDPIDPRAFAREDLDKIFASQYVQSGTFGAEAQGIENSVKGVGWALKALHRRLDEVKLFYHNSAEDIAETSRIFFQEYFLRCTGELGAHIMSDEVLREVPIEVVVAFVCFLVKRDNAFHDLLVDNSLEPDTNVFMTSILSIDSMIRRLTRRTELEIVAQWPKEGDIADGEATAYITSLLGDCSPDMENERKLSSRAPEELMRLLEKYVQLIASQCRARGNLGAKIFEGMFAAMPSYATNAAATIFALNHVLCKDISARYLAAILNDMSRSIGLVQELLEGNESFLE 2517
++LVIPEYCKDP+HPD PT GWLRR+K+ KR LT SFV RFFRL D MRYTFSYGK DDA MTK+ +D GT VLL + PVPTPFALQI+VQ+VSDFSF++++ L+VVAQLGS QCTRAF P+ +T+I S LLLPVEQ L Y N SV T N+GWFGE+V L Q G DKK + + FFIG+G NA+TA+ TCS+PF+ ++FGRQ+DM L+L G E + +L VG+TMRRLGQYKTAWPA T +LQA G ++++Q +WEGPC+VRTAP GLE+F P NP+EP K +MTIDYYSVEA+TDVN STLD+AVIIE +S A + + P P + + G+SP G S S F DSP P RP++ RRG+FGMV RKGKS+SP K P K + + P VT+PHDYFILRISPCPAETLKDL+ ER+WMF+CRNMLLYIT++LH + T+ + +REKLA AS+ETYK++R DM EIIKTSDW++ARG+GFTER+SVYFAKLLESKAHPLWG D+PIDP FAR+DLD++F+SQYVQSGTFGAEAQGIENSVKGVGWALK+L+RR DE KLFY+NS EDI +TSRIFFQEYFLRCTGELGAH++SD +L+EVPIEVVVAFVCFLVKRDNAFHDLLVDN LEPDTN F+TSILSIDSMIRRLT+RTELEIVAQWP EGDI++ AY+TSLL DCSPD EN+ KLS+RAPEELM+LLEKYV LI+SQCRARGNLGAKIFEGMFAAMPS+AT AAA +FALNH KD + RYLAA LNDM+RS GLVQE+++G+E L+
Sbjct: 321 KKLVIPEYCKDPVHPDHPTAGWLRRKKRDKRALTSSFVNRFFRLEYDAYIMRYTFSYGKDPSDDATQMTKVGLDDGTSVLLPSVPPVPTPFALQIVVQQVSDFSFSEHDSLRVVAQLGSLRQCTRAFCPKESTSIKSNLLLPVEQQCLAYGNTSVSTGNVGWFGEDVTLPEKQEGGDKKFELLRFFIGEGQGANAKTAVATCSVPFADLQFGRQQDMNLSLNGPEVEDAEELTVGITMRRLGQYKTAWPATMTALLQA----GSTTSTDQTMWEGPCMVRTAPQGLEVFRPMANPEEPTKAIMTIDYYSVEAMTDVNASTLDIAVIIEDESSAFSTQGSARKPPKXXXXXXXXSTLPPPSPLSGXXXXXXXXXXTPGVSP-----------GAFSRSGVFGLDSPAP-TRPNLDRRGSFGMVTRKGKSVSPSKSPIKDTRFRSTNGRGDSAAPKKVTVPHDYFILRISPCPAETLKDLVSERRWMFKCRNMLLYITNRLHQLRQEEETHGEGGPLASDRGLREKLAIASAETYKMLRADMSEIIKTSDWKRARGVGFTERMSVYFAKLLESKAHPLWGLDNPIDPTGFARQDLDRVFSSQYVQSGTFGAEAQGIENSVKGVGWALKSLNRRFDETKLFYNNSPEDIVKTSRIFFQEYFLRCTGELGAHVISDNILKEVPIEVVVAFVCFLVKRDNAFHDLLVDNYLEPDTNAFLTSILSIDSMIRRLTKRTELEIVAQWPNEGDISEDATPAYLTSLLEDCSPDAENDGKLSTRAPEELMKLLEKYVPLISSQCRARGNLGAKIFEGMFAAMPSFATTAAAAVFALNHASSKDTTTRYLAAFLNDMTRSAGLVQEMIDGSEEHLQ 1169
BLAST of mRNA_H-paniculata_contig44.11147.1 vs. uniprot
Match: A0A835YSM4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSM4_9STRA) HSP 1 Score: 793 bits (2048), Expect = 4.860e-263 Identity = 458/863 (53.07%), Postives = 553/863 (64.08%), Query Frame = 1
Query: 4 QLVIPEYCKDPLHPDRPTVGWLRRRKKVKRVLTDSFVTRFFRLTCDESAMRYTFSYGKKAQDDAELMTKLNIDQGTRVLLSNTTPVPTPFALQIMVQKVSDFSFNDNEELQVVAQLGSQLQCTRAFDPRLTTTINSTLLLPVEQASLPYANASVMTSNIGWFGEEVDLMSNQSGDDKKAQFVSFFIGQGVDVNARTALGTCSIPFSQIRFGRQEDMTLTLEGEGANGAQLFVGVTMRRLGQYKTAWPAVKTTVLQAKEVPGVDSNSEQHLWEGPCLVRTAPHGLELFS-PTVNPDEPNKPVMTIDYYSVEAVTDVNESTLDVAVIIEKDSIQSDQTRRANGTLVSPGCPANPINSSPNPRQASLGLSPIKASGGSTFCPGIASPSAAFAFDSPPPPERPSMSRRGTFGMVNRKGKSLSPKPPG-----KTIPWAERSPAMVTIPHDYFILRISPCPAETLKDLMGERQWMFQCRNMLLYITDKLHTQKMVRATN------IFNPSVREKLATASSETYKIIRTDMGEIIKTSDWRKARGIGFTE----------RLSVYFAKLLESKAHPLWGFDDPI----DPRAFAREDLDKIFASQYVQSGTFGAEAQGIENSVKGVGWALKALHRRLDEVKLFYHNSAEDIAETSRIFFQEYFLRCTGELGAHIMSDEVLREVPIEVVVAFVCFLVKRDNAFHDLLVDNSLEPDTNVFMTSILSIDSMIRRLTRRTELEIVAQWPKEGDIADGEATAYITSLLGDCSPDMENERKLSSRAPEELMRLLEKYVQLIASQCRARGNLGAKIFEGMFAAMPSYATNAAATIFALNHVLCKDISARYLAAILNDMSRSIGLVQELLEGNESFL 2514
+LVIP+YCKDP HP+ PT GWLRRRK + + +V RFFRL D RY Y + +D+ LMT++ I +GTRV+ PTPFAL I V +VSDFSF EL A LG+Q Q T++ PR TT N+ LLLPV L +AN SV T NIGWFGEEV + + + + AL S+PF+ + FGR D+ L LEG +NGA++ V VTMRRLGQYKTAWPA KT V+Q + E WEG C+VR AP GLE++ P + D P+ P +DYYS+EA+T VNESTLDVAVIIE + G P I+S+ + +L SP GG F G +P A RR +FGMVN KGKS SP P G HDYFILRI+PCPAETLKDLM ER+WMF+ R+MLLYIT KL + + +P +EKLA A++ETY+ IRT+MGEIIKT++W+ AR +GFT+ RLS YFAKL+ESKA PLW D DPR FAR DLD IFASQYVQ GTFGAEAQGIENSVKGVG AL+ALH+R+DEVKL++H+ I + F EY+LRC GELGAH++SDEVL+EVPIEVVVAFVCFLVKRD +FH+LL +++LEPD N F+T+ILSIDSM+RRLT+RTELEIVAQWPKEGDI +G+A Y+ SLLGDCSPD KLS+RAPEELMRLLEKY+QLI SQC+ARGNLGAK+FE MF A+PSYA NAA TI LNH C + RYL+AILNDMSRS L LL N L
Sbjct: 305 KLVIPDYCKDPTHPEHPTAGWLRRRKANRTSFSGDYVRRFFRLESDGDG-RYALYYSHELCEDSRLMTRVPIVEGTRVVTPQMLAPPTPFALSIAVNRVSDFSFPTVSELAACATLGTQRQRTKSIIPRQTTEFNAQLLLPVPADLLAHANDSVTTVNIGWFGEEVAVPPRRDDGGAAPRLLLSVHDTSSASGGEVALARASVPFASLPFGRPVDLKLPLEGLTSNGAEISVTVTMRRLGQYKTAWPARKTRVIQTTNC----AEKEDDKWEGQCMVRAAPQGLEVYRLPAPSKDNPS-PAAVVDYYSIEAITAVNESTLDVAVIIE--------------ATMGLGGPDGGISSAGAVEKRTL--SPAATQGGLGF--GGRAPRVRNA------------QRRMSFGMVNTKGKSPSPSPKGVEPKKXXXXXXXXXXXXXXSAHDYFILRITPCPAETLKDLMRERKWMFRDRSMLLYITYKLDAMRAEAESPEGTGPVSSDPQTKEKLARAAAETYRRIRTNMGEIIKTANWKHARAVGFTQEHTRMFFRLQRLSCYFAKLIESKARPLWALDAAPGCAPDPRPFARRDLDAIFASQYVQGGTFGAEAQGIENSVKGVGHALRALHQRMDEVKLYFHDDPASIETAANTVFVEYYLRCIGELGAHVISDEVLQEVPIEVVVAFVCFLVKRDKSFHELLTEHALEPDRNTFLTTILSIDSMLRRLTKRTELEIVAQWPKEGDI-EGDAGPYVASLLGDCSPDAGG--KLSTRAPEELMRLLEKYMQLIVSQCQARGNLGAKVFEAMFGALPSYAANAARTIALLNHTPCAWNAVRYLSAILNDMSRSGALSDALLVTNAEHL 1128
BLAST of mRNA_H-paniculata_contig44.11147.1 vs. uniprot
Match: A0A835YWA9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWA9_9STRA) HSP 1 Score: 465 bits (1196), Expect = 5.440e-137 Identity = 344/1030 (33.40%), Postives = 477/1030 (46.31%), Query Frame = 1
Query: 13 IPEYCKDPLHPDRPTVGWLRRRKKVKRVLTDSFVTRFFRLTCDESAMRYTFSYGKKAQDDAELMTKLNIDQGTRVLLSNTTPVPTPFALQIMVQKVS------------------------------------------------------------------DFSFNDNEELQVVAQLGSQLQCTRAFDPRLTTTINSTLLLPVEQASLPYANASVMTSNIGWFGEEVDLMSNQSGDDKKAQFVSFFIGQ-GVDVNARTALGTCSIPFSQIRFGRQEDMTLTLEGEGANGAQLFVGVTMRRLGQYKTAWPAVKTTVLQAKEVPGVDSNSEQHLWEGPCLVRTAPHGLELFS-----------------PTVNPDEPNKPVMTIDYYSVEAVTDVNESTLDVAVIIEK-------DSIQSDQTRRANGTLVSPGCPANPINSSPNPRQASLGLSPIKASGGSTFC-------------------------PGIASPSAAFAFDSPPPPERPSMSR---------RGTFGMVNRKGKSLSPKPPGKTIPWAERSPAMVTIPHDYFILRISPCPAETLKDLMGERQWMFQCRNMLLYITDKLHTQKMVRATNIFNPSVREKLATASSETYKIIRT----------------DMGEII-KTSDW--RKARGIGFT----------ERLSVYFAKLLESKAHPLWGFDDP------------IDPRAFAREDLDKIFASQYVQSGTFGAEAQGIENSVKGVGWALKALHRRLDEVKLFYHNSAEDIAETSRIFFQEYFLRCTGELGAHIMSDEVLREVPIEVVVAFVCFLVKRDNAFHDLLVDNSLEPDTNVFMTSILSIDSMIRRLTRRTELEIVAQWPKEGDIADGEATAYITSLLGDCSPDMENERKLSSRAPEELMRLLEKYVQLIASQCRARGNLGAKIFEGMFAAMPSYATNAAAT------------------------------------------IFALNHVLCKDISARYLAAILNDMSRSIGL 2478
+P+YC+D HPDRPT GWL+RRK K+ + +V RFFRL Y Y + DD MT++ I +GTR++ P PTPFA+ + ++ V+ + A LG Q TR D + L +PV+ L YA +V N+GW GEEV ++ + +D V +G+ G + AR A +PF Q+ FG+ D+ L ++G ANG + + +T++RLGQ+KT WPA KT ++ +E WEG C+VR APHGLE+F T N D+ +PVM +DY S+EA+T VN+STLD+AVIIE DS+ + R G + NS P R+ S G+ + P A A ER S R R V GKS+SP P R P+ DYF+LR+ PCPA L+ L ERQ + R ML Y+ T+ R ++ EK+A A+S+TY+ +R + +I+ + + W +KA+ G T +RL+ Y AKL+E K P W D +DPR F+R +LD IFA QY+Q + GIEN+VK G AL+ L RLDEV L+ ++ + +T+ F EY+LR GELGAH++SD VL +VPIE VVAFVCFLVKRD AF + L D+SL+P V ++SILS ++M+RRLTRR LE+VA WP+EG+I +G+A Y+ LLGDC+ D KLS+RAPE+LM+L+EKY+ LI +QC+ RG LG ++ M AA+PSYA+NA+ + +LNH C RYL+AI NDMSRS L
Sbjct: 365 VPDYCRDASHPDRPTAGWLKRRKASKKTFSGDYVRRFFRLEPAAEGGAYALYYAHEPTDDVRTMTRVAIAEGTRLVTPQMLPAPTPFAVAVAIRAVNGPPALTVGVVVKCPLHIAVXXXXXXXXXXXXXXXXXLTAPXXXXXXXXXXXXXAARAHRRERRRGGSARRPARVNVAAAAALGDQRVRTRRGDAA------APLAVPVQPNFLAYAAETVTAVNVGWSGEEVGILPRE--EDVALPRVVLTLGEPGAEPLARAA-----VPFDQLPFGKTLDLDLPMDGPAANGGDIAISITLKRLGQFKTVWPARKTRIITTSN----PHETEADKWEGHCMVRAAPHGLEVFQVGPPXXXXXXXXXXXXXXTPNLDD-KEPVMLVDYQSIEALTAVNDSTLDIAVIIEPSPSLAGPDSVGPAGSERMPRGSAGGGDRGSRKNSLP--RRNSFGMITLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKEPCAVGARALLAS------ERRSCGRMRRLAYPAYRNEARSVLALGKSVSPTKPPSGAAADARPPSAPQ--QDYFVLRVCPCPAFALRALANERQRTARDRGMLAYVA----TRAAAREGDL---QTLEKMAAAASDTYRSLRAXXXXXXXXXXXXXXXXSVADILAEAAAWPEKKAKRGGLTREQLRLTLRAQRLTCYLAKLMEVKCRPAWALDGAAXXXXXXXXXGGVDPRPFSRRELDGIFAQQYLQQ----TDPSGIENTVKATGRALRCLQERLDEVHLYLYDDDAALTKTATALFTEYYLRSMGELGAHLLSDGVLEQVPIETVVAFVCFLVKRDMAFSEALDDHSLKPSKAVAISSILSTETMLRRLTRRVMLEVVAAWPQEGEI-EGDAGPYVAGLLGDCAADSSG--KLSTRAPEDLMKLMEKYLPLITTQCQGRGELGMQVVLAMLAALPSYASNASLDLDSFTHSLTHSITFDCHGREXXXXXXXXXXXXXXXXXXXXXXVMSLNHAPCAWNCVRYLSAITNDMSRSTTL 1352
BLAST of mRNA_H-paniculata_contig44.11147.1 vs. uniprot
Match: A0A6H5KQB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB5_9PHAE) HSP 1 Score: 280 bits (715), Expect = 3.700e-83 Identity = 136/190 (71.58%), Postives = 161/190 (84.74%), Query Frame = 2
Query: 2849 FSAGVEVACLLVDIALKQMDDVCAEFFQADWYADDDNALMRKACKLLVIGVDALKRDVVTAPFFDHVVGAAVEKVSFRYLAGLVLRCTD-QSGGKMISEEELERMQTDVDTMQQYLSKYGDAVMTSVYHLREALVFLNEKPAILQQAVYVDILKRHHGKEEYVMKMLKILTAVRKDLRNFYVPAWLNKAS 3415
FSAGVEVACLL D+AL +MD VCAEFFQADWYADD+N +M KACKLL +G+ L+ +V PFFDH++GAA EK++FRYLAGLV RC D QSGGKMI+EEELERMQ+DV+ MQ +++KYG A +TSV HL+EA+VFL EKP I+QQ V+VDILKRH GKEE+VM MLK LTAVR DLRNF+VPAWLNK S
Sbjct: 2 FSAGVEVACLLADVALLEMDAVCAEFFQADWYADDENVVMHKACKLLNVGITRLESQIVKEPFFDHIIGAATEKIAFRYLAGLVHRCKDHQSGGKMITEEELERMQSDVEMMQSFVAKYGQAGVTSVLHLKEAIVFLTEKPEIIQQVVFVDILKRHEGKEEHVMSMLKTLTAVRDDLRNFFVPAWLNKPS 191 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44.11147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig44.11147.1 >prot_H-paniculata_contig44.11147.1 ID=prot_H-paniculata_contig44.11147.1|Name=mRNA_H-paniculata_contig44.11147.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=851bp MRYTFSYGKKAQDDAELMTKLNIDQGTRVLLSNTTPVPTPFALQIMVQKVback to top mRNA from alignment at H-paniculata_contig44:52808..65326- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig44.11147.1 ID=mRNA_H-paniculata_contig44.11147.1|Name=mRNA_H-paniculata_contig44.11147.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12519bp|location=Sequence derived from alignment at H-paniculata_contig44:52808..65326- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig44:52808..65326- >mRNA_H-paniculata_contig44.11147.1 ID=mRNA_H-paniculata_contig44.11147.1|Name=mRNA_H-paniculata_contig44.11147.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5106bp|location=Sequence derived from alignment at H-paniculata_contig44:52808..65326- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |