prot_H-paniculata_contig4399.11143.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4399.11143.1
Unique Nameprot_H-paniculata_contig4399.11143.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length78
Homology
BLAST of mRNA_H-paniculata_contig4399.11143.1 vs. uniprot
Match: D7G631_ECTSI (Sld5 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G631_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 4.270e-33
Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 0
Query:    1 MPS-DAGGLTRLTAAELEFIAEDQLIEIVPKFKHGPLHLIQGDFGPFVPQARARVPLWLAIALKKRQK 67
            MPS D+GGL +LTAAELEFIAED LIEIVPKFKHGPLHLIQGDFGPFVPQARA+VPLWLAI LKKRQK
Sbjct:    1 MPSADSGGLAQLTAAELEFIAEDALIEIVPKFKHGPLHLIQGDFGPFVPQARAKVPLWLAITLKKRQK 68          
BLAST of mRNA_H-paniculata_contig4399.11143.1 vs. uniprot
Match: M1C603_SOLTU (DNA replication complex GINS protein PSF2 n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1C603_SOLTU)

HSP 1 Score: 84.7 bits (208), Expect = 6.810e-20
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 0
Query:    1 MPSDAGGLTRLTAAELEFIAEDQLIEIVPKFKHGPLHLIQGDFGPFVPQARARVPLWLAIALKKRQK 67
            M S +      +AAELEF+AED+++EIVP  +  PL+LI GDFGPF PQ  A+VPLWLA+ALKKR K
Sbjct:    1 MASQSDNSVAFSAAELEFLAEDEMVEIVPNMRMEPLNLISGDFGPFRPQIAAQVPLWLAVALKKRGK 67          
BLAST of mRNA_H-paniculata_contig4399.11143.1 vs. uniprot
Match: A0A6P4DUT8_ARADU (DNA replication complex GINS protein PSF2 n=1 Tax=Arachis duranensis TaxID=130453 RepID=A0A6P4DUT8_ARADU)

HSP 1 Score: 85.9 bits (211), Expect = 3.790e-19
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 0
Query:    8 LTRLTAAELEFIAEDQLIEIVPKFKHGPLHLIQGDFGPFVPQARARVPLWLAIALKKRQK 67
            L+  +A ELEFIAED++++IVP  K GPL+ I GDFGPF+PQ  A+VPLWLA+ALKKR K
Sbjct:    9 LSLFSAEELEFIAEDEIVDIVPNLKMGPLNFISGDFGPFIPQIVAQVPLWLAVALKKRGK 68          
BLAST of mRNA_H-paniculata_contig4399.11143.1 vs. uniprot
Match: A0A6P5N6P6_ARADU (DNA replication complex GINS protein PSF2 n=1 Tax=Arachis duranensis TaxID=130453 RepID=A0A6P5N6P6_ARADU)

HSP 1 Score: 85.9 bits (211), Expect = 3.960e-19
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 0
Query:    8 LTRLTAAELEFIAEDQLIEIVPKFKHGPLHLIQGDFGPFVPQARARVPLWLAIALKKRQK 67
            L+  +A ELEFIAED++++IVP  K GPL+ I GDFGPF+PQ  A+VPLWLA+ALKKR K
Sbjct:    9 LSLFSAEELEFIAEDEIVDIVPNLKMGPLNFISGDFGPFIPQIVAQVPLWLAVALKKRGK 68          
BLAST of mRNA_H-paniculata_contig4399.11143.1 vs. uniprot
Match: A0A445CU87_ARAHY (DNA replication complex GINS protein PSF2 n=5 Tax=50 kb inversion clade TaxID=2231393 RepID=A0A445CU87_ARAHY)

HSP 1 Score: 85.9 bits (211), Expect = 5.190e-19
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 0
Query:    8 LTRLTAAELEFIAEDQLIEIVPKFKHGPLHLIQGDFGPFVPQARARVPLWLAIALKKRQK 67
            L+  +A ELEFIAED++++IVP  K GPL+ I GDFGPF+PQ  A+VPLWLA+ALKKR K
Sbjct:    9 LSLFSAEELEFIAEDEIVDIVPNLKMGPLNFISGDFGPFIPQIVAQVPLWLAVALKKRGK 68          
BLAST of mRNA_H-paniculata_contig4399.11143.1 vs. uniprot
Match: M1C604_SOLTU (DNA replication complex GINS protein PSF2 n=11 Tax=Solanaceae TaxID=4070 RepID=M1C604_SOLTU)

HSP 1 Score: 84.7 bits (208), Expect = 1.450e-18
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 0
Query:    1 MPSDAGGLTRLTAAELEFIAEDQLIEIVPKFKHGPLHLIQGDFGPFVPQARARVPLWLAIALKKRQK 67
            M S +      +AAELEF+AED+++EIVP  +  PL+LI GDFGPF PQ  A+VPLWLA+ALKKR K
Sbjct:    1 MASQSDNSVAFSAAELEFLAEDEMVEIVPNMRMEPLNLISGDFGPFRPQIAAQVPLWLAVALKKRGK 67          
BLAST of mRNA_H-paniculata_contig4399.11143.1 vs. uniprot
Match: A0A3Q7HGX1_SOLLC (DNA replication complex GINS protein PSF2 n=1 Tax=Solanum lycopersicum TaxID=4081 RepID=A0A3Q7HGX1_SOLLC)

HSP 1 Score: 83.6 bits (205), Expect = 2.020e-18
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 0
Query:    1 MPSDAGGLTRLTAAELEFIAEDQLIEIVPKFKHGPLHLIQGDFGPFVPQARARVPLWLAIALKKRQK 67
            M + +      +AAELEF+AED+++EIVP  +  PL+LI GDFGPF PQ  A+VPLWLA+ALKKR K
Sbjct:    1 MANQSDNSVAFSAAELEFLAEDEMVEIVPNMRMEPLNLISGDFGPFRPQIAAQVPLWLAVALKKRGK 67          
BLAST of mRNA_H-paniculata_contig4399.11143.1 vs. uniprot
Match: A0A2R6RRC4_ACTCC (DNA replication complex GINS protein (Fragment) n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6RRC4_ACTCC)

HSP 1 Score: 80.5 bits (197), Expect = 2.740e-18
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 0
Query:    3 SDAGGLTRLTAAELEFIAEDQLIEIVPKFKHGPLHLIQGDFGPFVPQARARVPLWLAIALKKRQK 67
            SD  G +  +AAELEF+AEDQ+IEIVP  +   L+LI GDFGPF PQ   +VPLWLA+ALKKR K
Sbjct:    5 SDPHG-SEFSAAELEFLAEDQMIEIVPNMRMESLNLISGDFGPFHPQISTQVPLWLAVALKKRGK 68          
BLAST of mRNA_H-paniculata_contig4399.11143.1 vs. uniprot
Match: V7C1R8_PHAVU (DNA replication complex GINS protein PSF2 n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=V7C1R8_PHAVU)

HSP 1 Score: 82.8 bits (203), Expect = 2.790e-18
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 0
Query:    8 LTRLTAAELEFIAEDQLIEIVPKFKHGPLHLIQGDFGPFVPQARARVPLWLAIALKKRQK 67
            L+  +A ELEFIAED++++IVP  K GPL+ I GDFGPF PQ   +VPLWLAIALKKR K
Sbjct:    9 LSLFSAEELEFIAEDEIVDIVPNLKMGPLNFISGDFGPFKPQIVTQVPLWLAIALKKRGK 68          
BLAST of mRNA_H-paniculata_contig4399.11143.1 vs. uniprot
Match: A0A059A961_EUCGR (DNA replication complex GINS protein PSF2 n=3 Tax=Myrtoideae TaxID=1699513 RepID=A0A059A961_EUCGR)

HSP 1 Score: 84.0 bits (206), Expect = 2.940e-18
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 0
Query:   12 TAAELEFIAEDQLIEIVPKFKHGPLHLIQGDFGPFVPQARARVPLWLAIALKKRQK 67
            TA E+EF+AED+LIEIVP  +  PL+LI GDFGPF+PQ  A+VPLWLA+ALKKR K
Sbjct:   13 TAQEIEFVAEDELIEIVPNMRMDPLNLICGDFGPFLPQIAAQVPLWLAVALKKRGK 68          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4399.11143.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G631_ECTSI4.270e-3389.71Sld5 domain-containing protein n=2 Tax=Ectocarpus ... [more]
M1C603_SOLTU6.810e-2059.70DNA replication complex GINS protein PSF2 n=1 Tax=... [more]
A0A6P4DUT8_ARADU3.790e-1965.00DNA replication complex GINS protein PSF2 n=1 Tax=... [more]
A0A6P5N6P6_ARADU3.960e-1965.00DNA replication complex GINS protein PSF2 n=1 Tax=... [more]
A0A445CU87_ARAHY5.190e-1965.00DNA replication complex GINS protein PSF2 n=5 Tax=... [more]
M1C604_SOLTU1.450e-1859.70DNA replication complex GINS protein PSF2 n=11 Tax... [more]
A0A3Q7HGX1_SOLLC2.020e-1858.21DNA replication complex GINS protein PSF2 n=1 Tax=... [more]
A0A2R6RRC4_ACTCC2.740e-1863.08DNA replication complex GINS protein (Fragment) n=... [more]
V7C1R8_PHAVU2.790e-1865.00DNA replication complex GINS protein PSF2 n=1 Tax=... [more]
A0A059A961_EUCGR2.940e-1869.64DNA replication complex GINS protein PSF2 n=3 Tax=... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.5.50coord: 11..69
e-value: 8.1E-23
score: 82.1
NoneNo IPR availableSUPERFAMILY160059PriA/YqbF domaincoord: 12..67
IPR007257DNA replication complex GINS protein Psf2PANTHERPTHR12772DNA REPLICATION COMPLEX GINS PROTEIN PSF2coord: 9..67

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4399contigH-paniculata_contig4399:1973..4412 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4399.11143.1mRNA_H-paniculata_contig4399.11143.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4399 1816..4526 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4399.11143.1 ID=prot_H-paniculata_contig4399.11143.1|Name=mRNA_H-paniculata_contig4399.11143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
MPSDAGGLTRLTAAELEFIAEDQLIEIVPKFKHGPLHLIQGDFGPFVPQA
RARVPLWLAIALKKRQKPLPGVSAWRR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007257GINS_Psf2