mRNA_H-paniculata_contig4399.11143.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4399.11143.1 vs. uniprot
Match: D7G631_ECTSI (Sld5 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G631_ECTSI) HSP 1 Score: 123 bits (308), Expect = 1.290e-31 Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 1
Query: 115 MPS-DAGGLTRLTAAELEFIAEDQLIEIVPKFKHGPLHLIQGDFGPFVPQARARVPLWLAIALKKRQK 315
MPS D+GGL +LTAAELEFIAED LIEIVPKFKHGPLHLIQGDFGPFVPQARA+VPLWLAI LKKRQK
Sbjct: 1 MPSADSGGLAQLTAAELEFIAEDALIEIVPKFKHGPLHLIQGDFGPFVPQARAKVPLWLAITLKKRQK 68
BLAST of mRNA_H-paniculata_contig4399.11143.1 vs. uniprot
Match: M1C603_SOLTU (DNA replication complex GINS protein PSF2 n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1C603_SOLTU) HSP 1 Score: 84.7 bits (208), Expect = 1.520e-18 Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 1
Query: 115 MPSDAGGLTRLTAAELEFIAEDQLIEIVPKFKHGPLHLIQGDFGPFVPQARARVPLWLAIALKKRQK 315
M S + +AAELEF+AED+++EIVP + PL+LI GDFGPF PQ A+VPLWLA+ALKKR K
Sbjct: 1 MASQSDNSVAFSAAELEFLAEDEMVEIVPNMRMEPLNLISGDFGPFRPQIAAQVPLWLAVALKKRGK 67
BLAST of mRNA_H-paniculata_contig4399.11143.1 vs. uniprot
Match: A0A6P4DUT8_ARADU (DNA replication complex GINS protein PSF2 n=1 Tax=Arachis duranensis TaxID=130453 RepID=A0A6P4DUT8_ARADU) HSP 1 Score: 85.5 bits (210), Expect = 1.210e-17 Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 1
Query: 136 LTRLTAAELEFIAEDQLIEIVPKFKHGPLHLIQGDFGPFVPQARARVPLWLAIALKKRQK 315
L+ +A ELEFIAED++++IVP K GPL+ I GDFGPF+PQ A+VPLWLA+ALKKR K
Sbjct: 9 LSLFSAEELEFIAEDEIVDIVPNLKMGPLNFISGDFGPFIPQIVAQVPLWLAVALKKRGK 68
BLAST of mRNA_H-paniculata_contig4399.11143.1 vs. uniprot
Match: A0A6P5N6P6_ARADU (DNA replication complex GINS protein PSF2 n=1 Tax=Arachis duranensis TaxID=130453 RepID=A0A6P5N6P6_ARADU) HSP 1 Score: 85.5 bits (210), Expect = 1.260e-17 Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 1
Query: 136 LTRLTAAELEFIAEDQLIEIVPKFKHGPLHLIQGDFGPFVPQARARVPLWLAIALKKRQK 315
L+ +A ELEFIAED++++IVP K GPL+ I GDFGPF+PQ A+VPLWLA+ALKKR K
Sbjct: 9 LSLFSAEELEFIAEDEIVDIVPNLKMGPLNFISGDFGPFIPQIVAQVPLWLAVALKKRGK 68
BLAST of mRNA_H-paniculata_contig4399.11143.1 vs. uniprot
Match: A0A445CU87_ARAHY (DNA replication complex GINS protein PSF2 n=5 Tax=50 kb inversion clade TaxID=2231393 RepID=A0A445CU87_ARAHY) HSP 1 Score: 85.5 bits (210), Expect = 1.660e-17 Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 1
Query: 136 LTRLTAAELEFIAEDQLIEIVPKFKHGPLHLIQGDFGPFVPQARARVPLWLAIALKKRQK 315
L+ +A ELEFIAED++++IVP K GPL+ I GDFGPF+PQ A+VPLWLA+ALKKR K
Sbjct: 9 LSLFSAEELEFIAEDEIVDIVPNLKMGPLNFISGDFGPFIPQIVAQVPLWLAVALKKRGK 68
BLAST of mRNA_H-paniculata_contig4399.11143.1 vs. uniprot
Match: M1C604_SOLTU (DNA replication complex GINS protein PSF2 n=11 Tax=Solanaceae TaxID=4070 RepID=M1C604_SOLTU) HSP 1 Score: 84.7 bits (208), Expect = 3.260e-17 Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 1
Query: 115 MPSDAGGLTRLTAAELEFIAEDQLIEIVPKFKHGPLHLIQGDFGPFVPQARARVPLWLAIALKKRQK 315
M S + +AAELEF+AED+++EIVP + PL+LI GDFGPF PQ A+VPLWLA+ALKKR K
Sbjct: 1 MASQSDNSVAFSAAELEFLAEDEMVEIVPNMRMEPLNLISGDFGPFRPQIAAQVPLWLAVALKKRGK 67
BLAST of mRNA_H-paniculata_contig4399.11143.1 vs. uniprot
Match: A0A3Q7HGX1_SOLLC (DNA replication complex GINS protein PSF2 n=1 Tax=Solanum lycopersicum TaxID=4081 RepID=A0A3Q7HGX1_SOLLC) HSP 1 Score: 83.6 bits (205), Expect = 4.470e-17 Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 1
Query: 115 MPSDAGGLTRLTAAELEFIAEDQLIEIVPKFKHGPLHLIQGDFGPFVPQARARVPLWLAIALKKRQK 315
M + + +AAELEF+AED+++EIVP + PL+LI GDFGPF PQ A+VPLWLA+ALKKR K
Sbjct: 1 MANQSDNSVAFSAAELEFLAEDEMVEIVPNMRMEPLNLISGDFGPFRPQIAAQVPLWLAVALKKRGK 67
BLAST of mRNA_H-paniculata_contig4399.11143.1 vs. uniprot
Match: A0A2R6RRC4_ACTCC (DNA replication complex GINS protein (Fragment) n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6RRC4_ACTCC) HSP 1 Score: 80.1 bits (196), Expect = 8.190e-17 Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 1
Query: 121 SDAGGLTRLTAAELEFIAEDQLIEIVPKFKHGPLHLIQGDFGPFVPQARARVPLWLAIALKKRQK 315
SD G + +AAELEF+AEDQ+IEIVP + L+LI GDFGPF PQ +VPLWLA+ALKKR K
Sbjct: 5 SDPHG-SEFSAAELEFLAEDQMIEIVPNMRMESLNLISGDFGPFHPQISTQVPLWLAVALKKRGK 68
BLAST of mRNA_H-paniculata_contig4399.11143.1 vs. uniprot
Match: V7C1R8_PHAVU (DNA replication complex GINS protein PSF2 n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=V7C1R8_PHAVU) HSP 1 Score: 82.4 bits (202), Expect = 8.600e-17 Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 1
Query: 136 LTRLTAAELEFIAEDQLIEIVPKFKHGPLHLIQGDFGPFVPQARARVPLWLAIALKKRQK 315
L+ +A ELEFIAED++++IVP K GPL+ I GDFGPF PQ +VPLWLAIALKKR K
Sbjct: 9 LSLFSAEELEFIAEDEIVDIVPNLKMGPLNFISGDFGPFKPQIVTQVPLWLAIALKKRGK 68
BLAST of mRNA_H-paniculata_contig4399.11143.1 vs. uniprot
Match: A0A059A961_EUCGR (DNA replication complex GINS protein PSF2 n=3 Tax=Myrtoideae TaxID=1699513 RepID=A0A059A961_EUCGR) HSP 1 Score: 83.6 bits (205), Expect = 9.180e-17 Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 1
Query: 148 TAAELEFIAEDQLIEIVPKFKHGPLHLIQGDFGPFVPQARARVPLWLAIALKKRQK 315
TA E+EF+AED+LIEIVP + PL+LI GDFGPF+PQ A+VPLWLA+ALKKR K
Sbjct: 13 TAQEIEFVAEDELIEIVPNMRMDPLNLICGDFGPFLPQIAAQVPLWLAVALKKRGK 68 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4399.11143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4399.11143.1 >prot_H-paniculata_contig4399.11143.1 ID=prot_H-paniculata_contig4399.11143.1|Name=mRNA_H-paniculata_contig4399.11143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp MPSDAGGLTRLTAAELEFIAEDQLIEIVPKFKHGPLHLIQGDFGPFVPQAback to top mRNA from alignment at H-paniculata_contig4399:1816..4526- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4399.11143.1 ID=mRNA_H-paniculata_contig4399.11143.1|Name=mRNA_H-paniculata_contig4399.11143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2711bp|location=Sequence derived from alignment at H-paniculata_contig4399:1816..4526- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4399:1816..4526- >mRNA_H-paniculata_contig4399.11143.1 ID=mRNA_H-paniculata_contig4399.11143.1|Name=mRNA_H-paniculata_contig4399.11143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig4399:1816..4526- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |