prot_H-paniculata_contig43988.11142.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig43988.11142.1
Unique Nameprot_H-paniculata_contig43988.11142.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length209
Homology
BLAST of mRNA_H-paniculata_contig43988.11142.1 vs. uniprot
Match: A0A0D3B353_BRAOL (Uncharacterized protein n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D3B353_BRAOL)

HSP 1 Score: 65.9 bits (159), Expect = 5.670e-9
Identity = 58/198 (29.29%), Postives = 95/198 (47.98%), Query Frame = 0
Query:   10 HLQRDCPNVYCRRCRKRGHDLNACPQLVNEDACLAEAEIETEFEEALKVDLDEEEFIAAYIASTSTTNSTTNKGEVLSVDSEGLEYREVGGMEIWICDNGATKHMTHNLDFLCD-HQQCNGHVRLADGKCLPIEGVG-MLFLQFRFDSEVVLMKLTQVALIPLLSHHLLSLGKFADFGHEYRCSREGLRINLKTGRVL 205
            + +RD   V C RC K GH    CP  + +     E+E ET  E A ++ ++E  F+       S  N+++N      +D+            +W  DNGA+ HMT NL+F     ++  G VR  D   + I+G G ++FL    + +    +L+ +  IP L  ++LSLG+  + G E R   + L +  + GR+L
Sbjct:  269 YQERDASKVVCFRCDKMGHFAMHCPDRLLKLQETNESEAETTHE-ADELMMNEVVFLNERNVIPSKLNTSSN------IDN------------LWYLDNGASNHMTGNLEFFTKIDRRVTGKVRFGDDSRIDIKGKGSIIFLTKNGERK----ELSDIYFIPNLRSNILSLGQATESGCEVRMKDDCLLLYDREGRLL 443          
BLAST of mRNA_H-paniculata_contig43988.11142.1 vs. uniprot
Match: A0A6J0KMW8_RAPSA (uncharacterized protein LOC108820453 n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0KMW8_RAPSA)

HSP 1 Score: 62.8 bits (151), Expect = 5.160e-8
Identity = 58/198 (29.29%), Postives = 93/198 (46.97%), Query Frame = 0
Query:   10 HLQRDCPNVYCRRCRKRGHDLNACPQLVNEDACLAEAEIETEFEEALKVDLDEEEFIAAYIASTSTTNSTTNKGEVLSVDSEGLEYREVGGMEIWICDNGATKHMTHNLDFLCD-HQQCNGHVRLADGKCLPIEGVG-MLFLQFRFDSEVVLMKLTQVALIPLLSHHLLSLGKFADFGHEYRCSREGLRINLKTGRVL 205
            + +RD   V C RC K GH    CP  + +     E+E ET  E A ++ ++E  F+       S  N+++      S+D+            +W  DNGA+ HMT NL+F     ++  G VR  D   + I+G G ++FL    + +    +L     IP L  ++LSLG+  + G E R   + L +  + GR+L
Sbjct:  236 YQERDASKVVCFRCDKLGHFAMHCPDRLLKLQETNESEAETTHE-ADELMMNEVVFLNERNVIPSKLNNSS------SIDN------------LWYLDNGASNHMTGNLEFFAKIDKRVTGKVRFGDDSRIDIKGKGSIIFLTKNGERK----ELKDYYFIPDLKSNILSLGQATESGCEVRMKDDCLLLYDRDGRLL 410          
BLAST of mRNA_H-paniculata_contig43988.11142.1 vs. uniprot
Match: A0A6J0N7D5_RAPSA (uncharacterized protein LOC108824882 n=2 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0N7D5_RAPSA)

HSP 1 Score: 58.9 bits (141), Expect = 1.060e-6
Identity = 51/194 (26.29%), Postives = 81/194 (41.75%), Query Frame = 0
Query:   13 RDCPNVYCRRCRKRGHDLNACPQLVNEDACLAEAEIETEFEEALKVDLDEEEFIAAYIASTSTTNSTTNKGEVLSVDSEGLEYREVGGMEIWICDNGATKHMTHNLDFLCD-HQQCNGHVRLADGKCLPIEGVGMLFLQFRFDSEVVLMKLTQVALIPLLSHHLLSLGKFADFGHEYRCSREGLRINLKTGRVL 205
            RD   V C RC K GH    CP  + +   ++E +   E  EA K+ + E  ++              N+  V   + E        G  +W  DNGA+ HMT NL++         G VR  D   + I+G G +    +     +L     V  IP L  +++SLG+  + G + R     L ++ K G ++
Sbjct:  219 RDTSKVMCFRCDKLGHYAATCPDRLLKLQEISENKDGDETHEADKLMVHELVYL--------------NEKNVRPKEFESSN----DGNRVWYLDNGASNHMTGNLEYFKSLDDTVTGKVRFGDDSRIDIKGKGSILFISQDGKRKIL---ADVYFIPELKSNIISLGQATESGCDVRMKENYLTLHDKDGNLI 391          
BLAST of mRNA_H-paniculata_contig43988.11142.1 vs. uniprot
Match: A0A6H5GQF8_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GQF8_9HEMI)

HSP 1 Score: 55.1 bits (131), Expect = 2.560e-5
Identity = 46/164 (28.05%), Postives = 77/164 (46.95%), Query Frame = 0
Query:   17 NVYCRRCRKRGHDLNACPQLVNEDACLAEAEIETEFEEALKVDLDEEEFIAAYIASTSTTNSTTNKGEVLSVDSEGLEYREVGGMEIWICDNGATKHMTHNLDFLCDHQQCNGH--VRLADGKCLPIEGVGMLFLQFRFDSEVVLMKLTQVALIPLLSHHLLSL 178
            ++ C+ C ++GH L  C +         +A+ +  +    K        I  Y  S+ T N T  K  ++S+ S+ L    V   + W  DNGATKH+T+NL+F    +   G+  V +AD K L   G G++ +   F  ++    L  V  +P +S +L S+
Sbjct:  219 DIVCKYCSEKGHWLKQCSRW--------KADGQPPYPVRAKG-------IEMYKNSSPTVNETETKMALVSISSDVLA---VSTDDNWWFDNGATKHITNNLNFFTKFEPFRGNCAVTVADNKKLKALGHGIIEVSNFFAGQLKRFTLNDVWYVPEISRNLFSV 364          
BLAST of mRNA_H-paniculata_contig43988.11142.1 vs. uniprot
Match: A0A6H5GBP5_9HEMI (Uncharacterized protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GBP5_9HEMI)

HSP 1 Score: 53.1 bits (126), Expect = 8.770e-5
Identity = 45/161 (27.95%), Postives = 75/161 (46.58%), Query Frame = 0
Query:   17 NVYCRRCRKRGHDLNACPQLVNEDACLAEAEIETEFEEALKVDLDEEEFIAAYIASTSTTNSTTNKGEVLSVDSEGLEYREVGGMEIWICDNGATKHMTHNLDFLCDHQQCNGH--VRLADGKCLPIEGVGMLFLQFRFDSEVVLMKLTQVALIPLLSHHL 175
            ++ C+ C ++GH L  C +         +A+ +  +    K        I  Y  S+ T N T  K  ++S+ S+ L    V   + W  DNGATKH+T+NL+F    +   G+  V +AD K L   G G++ +   F  ++    L  V  +P +S +L
Sbjct:  245 DIVCKYCSEKGHWLKQCSRW--------KADGQPPYPVRAKG-------IEMYKNSSPTVNETETKMALVSISSDVLA---VSTDDNWWFDNGATKHITNNLNFFTKFEPFRGNCAVTVADNKKLKALGHGIIEVSNFFAGQLKRFTLNDVWYVPEISRNL 387          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43988.11142.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0D3B353_BRAOL5.670e-929.29Uncharacterized protein n=1 Tax=Brassica oleracea ... [more]
A0A6J0KMW8_RAPSA5.160e-829.29uncharacterized protein LOC108820453 n=1 Tax=Rapha... [more]
A0A6J0N7D5_RAPSA1.060e-626.29uncharacterized protein LOC108824882 n=2 Tax=Rapha... [more]
A0A6H5GQF8_9HEMI2.560e-528.05Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5GBP5_9HEMI8.770e-527.95Uncharacterized protein n=1 Tax=Nesidiocoris tenui... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 43..63
NoneNo IPR availableGENE3D4.10.60.10coord: 1..36
e-value: 1.3E-7
score: 33.3
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 1..17
e-value: 0.0051
score: 25.4
coord: 19..35
e-value: 1.1
score: 11.0
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 1..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43988contigH-paniculata_contig43988:962..1588 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43988.11142.1mRNA_H-paniculata_contig43988.11142.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig43988 962..1588 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig43988.11142.1 ID=prot_H-paniculata_contig43988.11142.1|Name=mRNA_H-paniculata_contig43988.11142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=209bp
RCFICRSKDHLQRDCPNVYCRRCRKRGHDLNACPQLVNEDACLAEAEIET
EFEEALKVDLDEEEFIAAYIASTSTTNSTTNKGEVLSVDSEGLEYREVGG
MEIWICDNGATKHMTHNLDFLCDHQQCNGHVRLADGKCLPIEGVGMLFLQ
FRFDSEVVLMKLTQVALIPLLSHHLLSLGKFADFGHEYRCSREGLRINLK
TGRVLSAER
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf