mRNA_H-paniculata_contig43988.11142.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43988.11142.1
Unique NamemRNA_H-paniculata_contig43988.11142.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig43988.11142.1 vs. uniprot
Match: A0A0D3B353_BRAOL (Uncharacterized protein n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D3B353_BRAOL)

HSP 1 Score: 65.9 bits (159), Expect = 5.670e-9
Identity = 58/198 (29.29%), Postives = 95/198 (47.98%), Query Frame = 1 
Query:   28 HLQRDCPNVYCRRCRKRGHDLNACPQLVNEDACLAEAEIETEFEEALKVDLDEEEFIAAYIASTSTTNSTTNKGEVLSVDSEGLEYREVGGMEIWICDNGATKHMTHNLDFLCD-HQQCNGHVRLADGKCLPIEGVG-MLFLQFRFDSEVVLMKLTQVALIPLLSHHLLSLGKFADFGHEYRCSREGLRINLKTGRVL 615
            + +RD   V C RC K GH    CP  + +     E+E ET  E A ++ ++E  F+       S  N+++N      +D+            +W  DNGA+ HMT NL+F     ++  G VR  D   + I+G G ++FL    + +    +L+ +  IP L  ++LSLG+  + G E R   + L +  + GR+L
Sbjct:  269 YQERDASKVVCFRCDKMGHFAMHCPDRLLKLQETNESEAETTHE-ADELMMNEVVFLNERNVIPSKLNTSSN------IDN------------LWYLDNGASNHMTGNLEFFTKIDRRVTGKVRFGDDSRIDIKGKGSIIFLTKNGERK----ELSDIYFIPNLRSNILSLGQATESGCEVRMKDDCLLLYDREGRLL 443
[Close]
BLAST of mRNA_H-paniculata_contig43988.11142.1 vs. uniprot
Match: A0A6J0KMW8_RAPSA (uncharacterized protein LOC108820453 n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0KMW8_RAPSA)

HSP 1 Score: 62.8 bits (151), Expect = 5.160e-8
Identity = 58/198 (29.29%), Postives = 93/198 (46.97%), Query Frame = 1 
Query:   28 HLQRDCPNVYCRRCRKRGHDLNACPQLVNEDACLAEAEIETEFEEALKVDLDEEEFIAAYIASTSTTNSTTNKGEVLSVDSEGLEYREVGGMEIWICDNGATKHMTHNLDFLCD-HQQCNGHVRLADGKCLPIEGVG-MLFLQFRFDSEVVLMKLTQVALIPLLSHHLLSLGKFADFGHEYRCSREGLRINLKTGRVL 615
            + +RD   V C RC K GH    CP  + +     E+E ET  E A ++ ++E  F+       S  N+++      S+D+            +W  DNGA+ HMT NL+F     ++  G VR  D   + I+G G ++FL    + +    +L     IP L  ++LSLG+  + G E R   + L +  + GR+L
Sbjct:  236 YQERDASKVVCFRCDKLGHFAMHCPDRLLKLQETNESEAETTHE-ADELMMNEVVFLNERNVIPSKLNNSS------SIDN------------LWYLDNGASNHMTGNLEFFAKIDKRVTGKVRFGDDSRIDIKGKGSIIFLTKNGERK----ELKDYYFIPDLKSNILSLGQATESGCEVRMKDDCLLLYDRDGRLL 410
[Close]
BLAST of mRNA_H-paniculata_contig43988.11142.1 vs. uniprot
Match: A0A6J0N7D5_RAPSA (uncharacterized protein LOC108824882 n=2 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0N7D5_RAPSA)

HSP 1 Score: 58.9 bits (141), Expect = 1.060e-6
Identity = 51/194 (26.29%), Postives = 81/194 (41.75%), Query Frame = 1 
Query:   37 RDCPNVYCRRCRKRGHDLNACPQLVNEDACLAEAEIETEFEEALKVDLDEEEFIAAYIASTSTTNSTTNKGEVLSVDSEGLEYREVGGMEIWICDNGATKHMTHNLDFLCD-HQQCNGHVRLADGKCLPIEGVGMLFLQFRFDSEVVLMKLTQVALIPLLSHHLLSLGKFADFGHEYRCSREGLRINLKTGRVL 615
            RD   V C RC K GH    CP  + +   ++E +   E  EA K+ + E  ++              N+  V   + E        G  +W  DNGA+ HMT NL++         G VR  D   + I+G G +    +     +L     V  IP L  +++SLG+  + G + R     L ++ K G ++
Sbjct:  219 RDTSKVMCFRCDKLGHYAATCPDRLLKLQEISENKDGDETHEADKLMVHELVYL--------------NEKNVRPKEFESSN----DGNRVWYLDNGASNHMTGNLEYFKSLDDTVTGKVRFGDDSRIDIKGKGSILFISQDGKRKIL---ADVYFIPELKSNIISLGQATESGCDVRMKENYLTLHDKDGNLI 391
[Close]
BLAST of mRNA_H-paniculata_contig43988.11142.1 vs. uniprot
Match: A0A6H5GQF8_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GQF8_9HEMI)

HSP 1 Score: 55.1 bits (131), Expect = 2.560e-5
Identity = 46/164 (28.05%), Postives = 77/164 (46.95%), Query Frame = 1 
Query:   49 NVYCRRCRKRGHDLNACPQLVNEDACLAEAEIETEFEEALKVDLDEEEFIAAYIASTSTTNSTTNKGEVLSVDSEGLEYREVGGMEIWICDNGATKHMTHNLDFLCDHQQCNGH--VRLADGKCLPIEGVGMLFLQFRFDSEVVLMKLTQVALIPLLSHHLLSL 534
            ++ C+ C ++GH L  C +         +A+ +  +    K        I  Y  S+ T N T  K  ++S+ S+ L    V   + W  DNGATKH+T+NL+F    +   G+  V +AD K L   G G++ +   F  ++    L  V  +P +S +L S+
Sbjct:  219 DIVCKYCSEKGHWLKQCSRW--------KADGQPPYPVRAKG-------IEMYKNSSPTVNETETKMALVSISSDVLA---VSTDDNWWFDNGATKHITNNLNFFTKFEPFRGNCAVTVADNKKLKALGHGIIEVSNFFAGQLKRFTLNDVWYVPEISRNLFSV 364
[Close]
BLAST of mRNA_H-paniculata_contig43988.11142.1 vs. uniprot
Match: A0A6H5GBP5_9HEMI (Uncharacterized protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GBP5_9HEMI)

HSP 1 Score: 53.1 bits (126), Expect = 8.770e-5
Identity = 45/161 (27.95%), Postives = 75/161 (46.58%), Query Frame = 1 
Query:   49 NVYCRRCRKRGHDLNACPQLVNEDACLAEAEIETEFEEALKVDLDEEEFIAAYIASTSTTNSTTNKGEVLSVDSEGLEYREVGGMEIWICDNGATKHMTHNLDFLCDHQQCNGH--VRLADGKCLPIEGVGMLFLQFRFDSEVVLMKLTQVALIPLLSHHL 525
            ++ C+ C ++GH L  C +         +A+ +  +    K        I  Y  S+ T N T  K  ++S+ S+ L    V   + W  DNGATKH+T+NL+F    +   G+  V +AD K L   G G++ +   F  ++    L  V  +P +S +L
Sbjct:  245 DIVCKYCSEKGHWLKQCSRW--------KADGQPPYPVRAKG-------IEMYKNSSPTVNETETKMALVSISSDVLA---VSTDDNWWFDNGATKHITNNLNFFTKFEPFRGNCAVTVADNKKLKALGHGIIEVSNFFAGQLKRFTLNDVWYVPEISRNL 387
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43988.11142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0D3B353_BRAOL5.670e-929.29Uncharacterized protein n=1 Tax=Brassica oleracea ... [more]
A0A6J0KMW8_RAPSA5.160e-829.29uncharacterized protein LOC108820453 n=1 Tax=Rapha... [more]
A0A6J0N7D5_RAPSA1.060e-626.29uncharacterized protein LOC108824882 n=2 Tax=Rapha... [more]
A0A6H5GQF8_9HEMI2.560e-528.05Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5GBP5_9HEMI8.770e-527.95Uncharacterized protein n=1 Tax=Nesidiocoris tenui... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43988contigH-paniculata_contig43988:962..1588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score67.8
Seed ortholog evalue6.9e-09
Seed eggNOG ortholog3712.Bo3g019830.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size627
Cds size627
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930328.072588-CDS-H-paniculata_contig43988:961..15881622930328.072588-CDS-H-paniculata_contig43988:961..1588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43988 962..1588 +
1691481243.5235972-CDS-H-paniculata_contig43988:961..15881691481243.5235972-CDS-H-paniculata_contig43988:961..1588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43988 962..1588 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43988.11142.1prot_H-paniculata_contig43988.11142.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43988 962..1588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43988.11142.1

>prot_H-paniculata_contig43988.11142.1 ID=prot_H-paniculata_contig43988.11142.1|Name=mRNA_H-paniculata_contig43988.11142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=209bp
RCFICRSKDHLQRDCPNVYCRRCRKRGHDLNACPQLVNEDACLAEAEIET
EFEEALKVDLDEEEFIAAYIASTSTTNSTTNKGEVLSVDSEGLEYREVGG
MEIWICDNGATKHMTHNLDFLCDHQQCNGHVRLADGKCLPIEGVGMLFLQ
FRFDSEVVLMKLTQVALIPLLSHHLLSLGKFADFGHEYRCSREGLRINLK
TGRVLSAER
back to top

mRNA from alignment at H-paniculata_contig43988:962..1588+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43988.11142.1 ID=mRNA_H-paniculata_contig43988.11142.1|Name=mRNA_H-paniculata_contig43988.11142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=627bp|location=Sequence derived from alignment at H-paniculata_contig43988:962..1588+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGCTTCATCTGCCGCTCCAAGGATCACCTTCAACGGGACTGCCCCAA
CGTGTACTGTCGGCGATGTCGTAAGCGTGGTCACGACTTGAATGCGTGTC
CCCAACTTGTCAATGAAGATGCGTGTTTGGCTGAAGCTGAAATTGAGACT
GAATTTGAAGAGGCGCTCAAGGTTGACCTGGATGAAGAAGAGTTCATCGC
GGCATACATCGCGTCGACTTCCACCACAAACTCCACCACAAACAAGGGAG
AGGTTTTGTCTGTGGACTCTGAGGGGTTAGAATATCGTGAGGTGGGGGGG
ATGGAGATCTGGATATGTGATAATGGTGCAACGAAACACATGACCCATAA
TTTAGATTTTCTTTGTGATCACCAGCAATGTAATGGGCATGTACGCCTTG
CAGATGGTAAATGTCTCCCGATCGAAGGAGTTGGCATGCTGTTCCTTCAA
TTTCGATTTGACTCAGAGGTTGTTTTGATGAAGTTAACTCAGGTTGCCCT
CATACCACTCCTCAGTCATCACCTTCTATCTCTCGGGAAATTCGCAGACT
TTGGTCATGAATATAGGTGTTCGCGCGAAGGGCTCAGAATTAACCTTAAA
ACAGGGAGAGTTCTGAGTGCTGAGCGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig43988:962..1588+

>mRNA_H-paniculata_contig43988.11142.1 ID=mRNA_H-paniculata_contig43988.11142.1|Name=mRNA_H-paniculata_contig43988.11142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1254bp|location=Sequence derived from alignment at H-paniculata_contig43988:962..1588+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGCTTCATCTGCCGCTCCAAGGATCACCTTCAACGGGACTGCCCCAA
CGTGTACTGTCGGCGATGTCGTAAGCGTGGTCACGACTTGAATGCGTGTC
CCCAACTTGTCAATGAAGATGCGTGTTTGGCTGAAGCTGAAATTGAGACT
GAATTTGAAGAGGCGCTCAAGGTTGACCTGGATGAAGAAGAGTTCATCGC
GGCATACATCGCGTCGACTTCCACCACAAACTCCACCACAAACAAGGGAG
AGGTTTTGTCTGTGGACTCTGAGGGGTTAGAATATCGTGAGGTGGGGGGG
ATGGAGATCTGGATATGTGATAATGGTGCAACGAAACACATGACCCATAA
TTTAGATTTTCTTTGTGATCACCAGCAATGTAATGGGCATGTACGCCTTG
CAGATGGTAAATGTCTCCCGATCGAAGGAGTTGGCATGCTGTTCCTTCAA
TTTCGATTTGACTCAGAGGTTGTTTTGATGAAGTTAACTCAGGTTGCCCT
CATACCACTCCTCAGTCATCACCTTCTATCTCTCGGGAAATTCGCAGACT
TTGGTCATGAATATAGGTGTTCGCGCGAAGGGCTCAGAATTAACCTTAAA
ACAGGGAGAGTTCTGAGTGCTGAGCGAAGGTGCTTCATCTGCCGCTCCAA
GGATCACCTTCAACGGGACTGCCCCAACGTGTACTGTCGGCGATGTCGTA
AGCGTGGTCACGACTTGAATGCGTGTCCCCAACTTGTCAATGAAGATGCG
TGTTTGGCTGAAGCTGAAATTGAGACTGAATTTGAAGAGGCGCTCAAGGT
TGACCTGGATGAAGAAGAGTTCATCGCGGCATACATCGCGTCGACTTCCA
CCACAAACTCCACCACAAACAAGGGAGAGGTTTTGTCTGTGGACTCTGAG
GGGTTAGAATATCGTGAGGTGGGGGGGATGGAGATCTGGATATGTGATAA
TGGTGCAACGAAACACATGACCCATAATTTAGATTTTCTTTGTGATCACC
AGCAATGTAATGGGCATGTACGCCTTGCAGATGGTAAATGTCTCCCGATC
GAAGGAGTTGGCATGCTGTTCCTTCAATTTCGATTTGACTCAGAGGTTGT
TTTGATGAAGTTAACTCAGGTTGCCCTCATACCACTCCTCAGTCATCACC
TTCTATCTCTCGGGAAATTCGCAGACTTTGGTCATGAATATAGGTGTTCG
CGCGAAGGGCTCAGAATTAACCTTAAAACAGGGAGAGTTCTGAGTGCTGA
GCGA
back to top