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Homology
BLAST of mRNA_H-paniculata_contig4398.11140.1 vs. uniprot
Match: D7FUF5_ECTSI (Conserved oligomeric Golgi complex subunit 7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUF5_ECTSI) HSP 1 Score: 206 bits (524), Expect = 2.750e-59 Identity = 106/135 (78.52%), Postives = 115/135 (85.19%), Query Frame = 2
Query: 11 GGITGSGLAMWLPSFLEYLQGSLMDERKKTSDLFGADKSPAVLCQLVVAAFQPLLGSFQKHLEAAPWPDAVCMLTEVLRFVGQALELARGAGERDLLAVMLSAAAAFRPIQDSFGSLERKYLSQELSPLLELLEG 415
GG T SGLA WLPSFLEYLQGSLMDERKKTSDLFG D SPAVLCQLVV AFQPLLGSFQKHLEAAPW +AV +LTEVLRFV QA++L RGA ERDLLAV+LS+ + FR IQDSFG+ ER +LS EL PLLE L G
Sbjct: 274 GGTTSSGLANWLPSFLEYLQGSLMDERKKTSDLFGGDTSPAVLCQLVVVAFQPLLGSFQKHLEAAPWTEAVALLTEVLRFVNQAVDLLRGASERDLLAVLLSSTSGFRLIQDSFGAHERSFLSLELQPLLETLGG 408
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 417 |
| Cds size | 417 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4398.11140.1 >prot_H-paniculata_contig4398.11140.1 ID=prot_H-paniculata_contig4398.11140.1|Name=mRNA_H-paniculata_contig4398.11140.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
ERGRRDNGQRACDVASFFFGVPTGLFDGRTQENVRSFRCRQVTGGAMPAR RGSLPAPLGILPEAPRGRSMARCCVHAYRGVAVRWPSVRAGKRGRGKGLA GGHALCSSGVSPDSGQLWIPRAKVLIAGAKSAFRATRGG back to topmRNA from alignment at H-paniculata_contig4398:2862..10954- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4398.11140.1 ID=mRNA_H-paniculata_contig4398.11140.1|Name=mRNA_H-paniculata_contig4398.11140.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8093bp|location=Sequence derived from alignment at H-paniculata_contig4398:2862..10954- (Halopteris paniculata Hal_grac_a_UBK monoicous) GAGAGGGGTAGGAGGGATAACGGGCAGCGGGCTTGCGATGTGGCTTCCTT
CTTTTTTGGAGTACCTACAGGTGGGCTGGGGATTTGTTGGACTTGTAGTC
TATACATACAGTAGGACAATTTATATCTTTTATATGTTCATCAGGGTTTG
TTTACAAATTACAAATTAGAGCTATGCTGAAATTTCAAAACTTGTAAAAT
ACGAAACCATACCCCCCCCCACCCACTAGATTTCGTTTCTTTGTACAAAG
TGTTTTTGTTTTAGTCTAATCTAGGTCAAAATTAGTGAAATGAATTTTTA
TTTATTTTTTATTTTCACTTGGTTATTAGGGGGGTTGGTTCGCCCGGGGG
GGGGGGGGAAGGAGTTCCTAATATAGTGTATGACATACTCTTCTTTTCAT
ACACCAGACGTTAATTAACTTTTTCGCTGTTTTTTGTGGATTTTTTTGAA
ATTTTGTTGAAACGTCTATTTTGTTTTTATTTTTTGTCGTGTTTTCTAAA
AAAAATATGTGTACTTTGGAGTATGGTCTCAAATATCAAGTATCATGTAT
TCGTGTTTTGTCTAAAAATTGCAAGACTTGACACCGTCCGTTACCTAACT
TACGACATCCTCGGTGGCTCGCTTACCGGTCAACTTTCCTCGTCCCTTAT
CATTTGTCACCTGTTATCACATGAAATTATGAAAATAGTTTTAGTAGTCA
TGTTAAGGTTAGGGCTACCATAAAACCCGGAGATATCGCATCATGTTTGG
GCGAATATCTTTCGAACGTGACTATCTCTCTCGAGGACGGGGACAGACAT
TACATGTTCCAAAGAACAACCCATCAATCGACAGATCTGTCATTGCCACA
GGATGTTCCCGGAGGCTCACCATTCGTAGTCAGCAGTAGCCATCGCCGTG
GTTGTTGTGATAATCATTCGCGTTAAACAAATTTGCATTAAAGTGACATC
CATACCTACCTCCGGGTTTTGAGTCGGGCTACGGCGTGGGAAGGGCGGGG
GGGGGGTGAGTCGTGATAGAGTGATGGAGTGCACAATGAATCAAAATATA
GCGAAATATAGCAAATAATATCGTGTAGAAACATGATAATGACCGTATCA
TAAGAAGGAGGTATATTCAGCATCTTAAAATAGTTTGTTGGATTATTTTG
AATTACAAACTGATGAAGCTTCAGAGGGGGATTTCGAGCCACTTTATCAA
GCGGTCATTCGGTATAAACGTGGCTCAAAAAAGCTCAAATCAAAACCAAC
ATAAGTAGTCGAGGGCAGTAGGTTAACGTAACCCTCGAGGTGCATTGTGT
ACGACTCGAATGGGTCATACATTTTTTAGAGGAAAAATGATATACATATC
TATATATATAGAGAGAAGTATTGCCGAGCCGCTCCCAGAAGCGTCTCCAA
ACGCTCAATAACGGCTCAGCGATAACCCCCTCCCTAGCATAGCCTTTGTA
TTTTACGGTGTGTACGTGACTGTTACTCCATCTGGCTTGTGTACATTCGG
TCGATATACTGAATGATTTCCATTTGAGCGCCGGAGGCTAGCTTTTTCGG
AACAAAACAGTCATGATATGATAACAAGGAAGATGAAGCGACGTGAAGAT
GTCGTTGCGAGGAGGACCATGCCAATTATCTGCATTGTGGTGAATTAACG
GTCTGTATTGGACACTCTTGCTGTCTGTCTTTCCGTCTGTCGGAACAGTG
ACGGCTGGCTCCCTCCCTACCCCCGTAGTCATGTCATAGGTCATATACGT
CGATCTTGCCTGTTTTTGAGGTGTATGATTAGATTATGACTAGTAGATAG
GGGTTGATTGATTAAATAATGACCTGTAGACAGGGGTTGATTGGTTATAA
ACGGGATTCGGCGCTGAAAGGGTTAGAAGCTGTATTTGAATAGAACCAAC
CAGTCGGCGGCTTAAGTAGAACTCTATCTCTCGTCTACAGCATAGGGACG
AACAAGATTGAAAAATCGTATTTTTTTTTATATCACAGGACGAGTGAAAA
AGTGTGCCCAAATAATCGTCAAGCAATTGGGAGGTTAGGTACTAATAGTT
CAGCTGGGTGACTTCTACTCGAGTCCTGCAATGGTTGAGGGCAAATCATT
TGATACTTCCCCCTCACGAGGACACGTGGATAATGGTCTAACAAATATGA
CATGCAAAACATGCGTACCCCCCCTTCACGGGAACGCCCCGGGGAATCAT
GTCCGCGCATCCTTGGCACGGACTGTTGATGAGTTCATTTTCTGGGTATA
TAGATGACTACTGGGTGGTATTACGTTGTTAGATGGCGGAAAATACAACA
CCGTCACCTATCGTTGGAGGATACACGATATCCCAATTTCAGAACGAGTA
CACTATATCTGACAAATTAAATTCGGCAATGCATTTTTATTTTATTTTTT
GATCTTACTCGCTCTAGATCTCTGTGGCGAATACGGTACAGCGTTCCTGA
TAGATGAAGCAGAGCATCCAGTTGGTTTCCTCGTGTCGAGTAAATCGGCA
CAACAGCACGGACTGCTCTAGAAGGTGTTCTATAATAGATGTGTTTTATA
ACTGTACACTAACGATGGTGTATCCAATTGTTCTGGTATGATATGTTTTG
TAGGACGTATGCTATCGTTGTAGGACTCGTTCATAGTAGCCACAAATATA
TTCTGCTGTAGCACCGAAGGGTAACAAACATACGCGCATAATTAGCATGG
AGCGCCCGCCGGTAGCTATCTGTCAAAAGTCGTTACAGTACAATCTCGGT
ACGGTAGCAGGATAGTAGCAGTATAGTAGTTTCGTTCATCTGTACATTAT
CTGATTACAGAACAAAATTCTCTTTAAATACAAATGGGATTCTGAGCACA
TTCCCCAAATTTGTAAACATTTTTTTTTTTGTTGGCTAGACTTTGTGCAG
ATTGGTGGCTGGAATCCCGAGAGACTGTAGGGCTCGTTTCTCAGTCCACA
AACAAATGCACAGGCGATGCTCAAATGGAGCAGCCGGTGGCTGCCAATTG
GTGTACAGGAGCAAAGTGGAATTTACGAGTCCAATTTTGTTTTCGTCAAA
GGCTCTTTTTCTGATCGATTGGTTTTTTGAGTGATAGATTATTCTCAGAA
TTTAACTAATGGTCACTTTTTTTTCTTCTTTTTTTTCATGGCGCCACCAT
GGTCCAACCATAGTGAGCAAGCGGCGTCGCGTGGTACACAGTCACTGTTT
TTTTTTTGTTTTGTTTTTTCAGTTTGTGTGTGTGTAACTTACTCCGACAC
TGAATGATTACGAGGTGCTGCTGGCATAGTAGCTATCAATAGTTTCGATG
TATCGATTTCAAGCTTACTGTCCTTGAGACCCCTCTCCATGCGCTGGACA
CCTGCCCCACTTACACGCTGCTGTTGCTACTGTATCGTCACCACCCCGCC
ACCCCACTACCACCCTTGGATGAGTGTTACCCAGCGGGCGCCTCATAACT
TCCCGGTTATTACCGATCTCGGGCACCAAAGTATATGTCACCCCCGATTA
GCAGCGTATATTACACCCTAGTAGTTGGACCATTTCCCCTAGTATTGTCA
TAATTCATTAGCGGTGTCCAAAATACTAGTTTCCGTGTAACAGCCATCCT
TTGCCACCACCACCACTACCGTCCTATCAGGGCTCTTTGATGGACGAACG
CAAGAAAACGTCCGATCTTTTCGGTGCAGACAAGTCACCGGCGGTGCTAT
GCCAGCTCGTCGTGGCAGCCTTCCAGCCCCTCTTGGGATCCTTCCAGGCA
AGCGATTGACTTGAATTGACTTATCGTATTTTGGAGATATTAGATGGTCG
TATCAAAAACCTGGAACAACAGGTATATCATACGGTGTGTGCTTGTATGA
TATGCTGCACTATGCTCTACTATGTCATGTCCTGCCATGCCGTGCTGTGC
CGTGCTGTGCCGTGCTATGCTATACTGTGCCATGTCCTGCCGTGCCATGC
CATGCCATGCTGTGCTGTGCTGTGCTGTGCGGAGTCGTTCAGCGATGGAG
AGGCTTGAAAAATGACAGATTCATTCACAGCCCACAAATAAATGCGTAGG
CGTGATGGTTACGTGGGTCAACCAACCATTGACTGCCAAGTGTTGCGCAA
GAGAAAAGTTGGATTTAGATTTTTTTTTTTTTTCGCGAACGCTCTATTAG
TAACATCTACTCTTGGATTAAAAAAAAAAAAAAATGTCGTTTTTTGTCGT
TTTTAGTGTTTTCTCTCCGGTAGCAGAGACCTTAATACTAACCTTTGATG
TTAACGTTAACCCCAGCGTTAATCGTAATATTGCTTTTGCAGAAGCACCT
CGAGGCCGCTCCATGGCCAGATGCTGTGTGCATGCTTACAGAGGTGTTGC
GGTTCGTTGGCCAAGCGTTAGAGCTGGCAAGAGGGGCCGGGGAAAGGGAC
TTGCTGGCGGTCATGCTCTCTGCAGCAGCGGCGTTTCGCCCGATTCAGGA
CAGGTGAAAAACAAGGAGACCAACGCATTATTTTATTTTTTATTTGTTTG
TTTAATTACAGTAGGTATGCCGTTTCATGGCCTCCCCCCCTCCACCGCCC
CCTGGGAAGGCCAAAGGAGGGCTGGAAGGAGAGGGAGAGATATTAGGTAC
TACTGTACTACTGTACCCTTGTGCAAGCAGATTTTGGGATGTCTTAAAGC
TGACCAGAGGTTAGAGGGAGGGGGGCTCGAAGGGCCCGACCGACTGGAGA
TCCCTTTCTTATTTGTTTCCGTGTTTTTTTTTAATAAATCGGTTGTTCTC
TTAGCGCAGATATCAGTTCTTTTTCTGGTTTTTACCTAAATTTGCATTTT
TTCCTGTTTTTATTATATTTTCGGTTTTCCATTTTATCAAGAAAAAAATG
ATGTATTTCGCCTTTTTTTTACCCCTTTTTATAGTAACGCCAATTTCCAT
CTACAATAAGGAGCATCCCCGTTTATCGATGAAGTTAACCGTAAAAAAGC
AACGGATCGCGTGTGCCTTCTTATTGTGACGCGACTGCGGGGATAGGTAG
AGGGCCGTCGCTGTTGAGACGGTCCAGTCAGCCCCCCAGTACAGCATGTA
CGGCAAAAATAGCTGGCATCAATAGATAGCGATCGATCTTGTTTGTTGTC
AGATGGAACATTCTTTTTTCTTTCTTTTTCGTTCCGATTTAGCCTACTCC
GGCGGTAAAAATGGTTGAGACTTAAAAAATCAACATTTTTTCGGTTCCTT
GTTATTACTTTTTCCCCTTTGATTCATCGTTTCTGTCCTTATATCTATCT
CTTTATATCTCTCTATCTCTTTATATCTCTCTATCTCTCTATCTATCTCT
CTATCTCTCTGTCTATCTAACTTTTCGATATCGTAGATCGGCATTTGCCC
CTACCGACCAGATAGTACTATATGTCATTCTCCATAAGGTGCAGGACATA
TCGGTGATTACCCTGACCGCGGATCTAAGCGGTTGGACTGAAGTTATTGA
GGAAAAAGACAAGCGTGGGCTCTTCGTTTGGCACATTACTCGAAGTACAC
ATTTGTATACAAGCAGTATAATGAGCTAGCTCAGTAAACCCTCCAGCCTC
ACAGCCCGTTTGAAACCTTGTTTCGTGTGTGTTGAACGATTGCCTCATCT
GATGGTCGAATAGACGTTTCTGGTAAACCATTTGTGTTTGGCCTGGTATT
GAAGGGAGACCAAATGAAGCCAACGTACGCCACGGGTTTTTTTGCCTCCG
GTGGCGCCTCCTCACCTGTCGGGGGGGCCTCACTAGTCCGACCTAATGGG
CCGTTTGACCCTGTGTGCAGCCGCCGATAGATGGTGATGGTATCTAAGAA
TAAGGTCACGAAAAGAGCAAGATCATGAAGAATAGGAGTGGATTAGTGCA
ATCGTTAACAGCAAGAAGAACTAAGTTATGAGCTTAATGTAAGATATGGA
TCTTGCTTGATGAATTCTTAATTTCGGATCTTTGACACATAAACATACTA
TTCTTTGCCTCAAATATTGCGGATCTTGTAGTCTAATTTAGTGGTATTAA
AACCCCATCTCACGTGTAATATTAGGAGTCGTACTCAATCTTGCTTGATC
TAACATTAGGGATCTTGCGTGATGACTTCTTCATTTTGGATCTTAAGACC
GAAAAATACGACTCTTGCATGGAAGGGTGCAGACTTGAGCCAATCTTAGT
CGATCTAAGATCACGGATCTTGCTTGATGAATCCGGACCTTGACCTGACA
TGGAAAGGTACGAACCACTCTCGCAACGAATATATATTATTGTGGACTTT
ATTCAATTTTAGTGGTATAAGATTCATCTTCGAAGATCGCGGATCTGATC
CAATCTTTCCTGATCGAAGGTTATGAATCTCAATGCGGAAAGATCCATTC
TTGTCGTCACAATATTGTGGATGTTGCTCAATGTTACGTAGTGCATGTAA
GATTACGGATTTTGTTTGATGGATTTGGATCTTGATATGGTAAACACGAA
TATTTATTTAAGAATGCGGATCTTTCCTCGAAGATTTTGGAATCTAGCCG
AGTTTTATTTAATTTTAAAACACTAATCTTGCTTAAAGATGATGGATCTT
GCTCAAATATTACTTGATTCCAATTTCGAATCTTGCTCGAAGAAATTCGG
ATTTTTTATGTTGCGCAGTACCAATGGTGCCATCAGATGCCATATCTTGG
TCGATCTTACTTGAAAGAATTCGGATCTTGTTACTGGGGGGGTTTACAGA
TATTGATCAATCATAGTCGAATAATTTGAATAATTGATCAAGATTAAAAG
ATTTTGGGATCTTGATCAAAAGATTTCTTGATCATGAATTCTGCTCAAAA
AATTTGAAAAAAAAAAAAACGTTGAAACCGAGGGAATGTTATTGCGCCCG
TTTTACTTTTTTCAAATTAAAGATTATGTTTCTTTTTACCTAAAGATTGC
CGATATAGGATTTCTCTATCTCAATCGAAGAAGTTAAATCTGTTAAAACT
GGAGGAATGCTAACCGCAAATACGGTTCTATTTGATTATCACGAAGGATT
TGTTGATCTTCAACCTGAAAATTCGAATCTTGATACTGCGATAAAAATTA
ACGTTTAACACACCGTGTCTCGGTAGAAGATACCGATCTTTACTTCCTTG
AAGTCAGACGATCCTTCTTTTCTTCTTATGCTAAGGGGCACATATTTCTC
TTAGTTCTTACACTTGTACTCTTATTGATTTTATTTTGCTGATACGTATA
TATACCTACATATTCATAACCTCGAAATGAGTACAATGGAGTTATAATAT
GAGATTCAGAGTATTGGTCAGCTGACTGTGGCAATGTGATTTTACCAAAA
TATCGAGTTTTAGTTACCAAAATTGATGTTTTTTTTGTTTTTTTTAATGG
TATCACTCGTTAATGTGAGGACTTTTTCATGTTTCGATTACAGCAGACAT
GCCAGTGATACAGTGATGTTTCCTTGTGAAAGTTGCCCTATCACGGAGGC
AGATAATAAATAGAACCAACTTGTTCGGCTTGTAGGGCATATAGCAGGTG
TCTTTCCTGGAAGATACTTATTCCTCTGTCTTGTGTCGTGGATACGCGAA
CCTTTATTCCTCGAAGACAGGGGGCCTTCGATTTTCGAGTTGCTATTGTA
GTAATAAGCGCCATTTCAAATGTGCGTGTTTTTTCTCTTTCTTGTGTGTG
TGTGTGTGTGTGTGTGTGTCGTTTTATTATATGTATATAATCCAGATTAT
TTTTTCTCGTTTCTCTTTTTTCTCTTTTTTTTCTTTTTTTTTGTTCAATT
TTCTTTCGTTTTCTCTTCTGCCGATAACACGCTGGAATTACGTCAGAATT
ATCAAAAAGAAGAAACTTGAGATAAACTAACGAATTTTTTTTCTTTTTTT
TTCTGAAATTTCGGAAAAAACAGGAAAAGTAAAAAAAAAAATGCATAGAA
TAATGACCCTCTGTACACGTTCCTTTTCCTTCTTTCGTTCTCTCTCTGGC
TTGTGTCTTCCCTCGCGCTTGCTTGTTTGGTTTGGGCGCCCTTTGCCTTG
GTAACGCCTTTTGTAACGCCGCAGCTTTGGATCCCTAGAGCGAAAGTACT
TATCGCAGGAGCTAAGTCCGCTTTTAGAGCTACTCGAGGGGGT back to topCoding sequence (CDS) from alignment at H-paniculata_contig4398:2862..10954- >mRNA_H-paniculata_contig4398.11140.1 ID=mRNA_H-paniculata_contig4398.11140.1|Name=mRNA_H-paniculata_contig4398.11140.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig4398:2862..10954- (Halopteris paniculata Hal_grac_a_UBK monoicous) GAGAGGGGTAGGAGGGATAACGGGCAGCGGGCTTGCGATGTGGCTTCCTT CTTTTTTGGAGTACCTACAGGAGAGGGGTAGGAGGGATAACGGGCAGCGG GCTTGCGATGTGGCTTCCTTCTTTTTTGGAGTACCTACAGGGCTCTTTGA TGGACGAACGCAAGAAAACGTCCGATCTTTTCGGTGCAGACAAGTCACCG GCGGTGCTATGCCAGCTCGTCGTGGCAGCCTTCCAGCCCCTCTTGGGATC CTTCCAGGGCTCTTTGATGGACGAACGCAAGAAAACGTCCGATCTTTTCG GTGCAGACAAGTCACCGGCGGTGCTATGCCAGCTCGTCGTGGCAGCCTTC CAGCCCCTCTTGGGATCCTTCCAGAAGCACCTCGAGGCCGCTCCATGGCC AGATGCTGTGTGCATGCTTACAGAGGTGTTGCGGTTCGTTGGCCAAGCGT TAGAGCTGGCAAGAGGGGCCGGGGAAAGGGACTTGCTGGCGGTCATGCTC TCTGCAGCAGCGGCGTTTCGCCCGATTCAGGACAGAAGCACCTCGAGGCC GCTCCATGGCCAGATGCTGTGTGCATGCTTACAGAGGTGTTGCGGTTCGT TGGCCAAGCGTTAGAGCTGGCAAGAGGGGCCGGGGAAAGGGACTTGCTGG CGGTCATGCTCTCTGCAGCAGCGGCGTTTCGCCCGATTCAGGACAGCTTT GGATCCCTAGAGCGAAAGTACTTATCGCAGGAGCTAAGTCCGCTTTTAGA GCTACTCGAGGGGGTCTTTGGATCCCTAGAGCGAAAGTACTTATCGCAGG AGCTAAGTCCGCTTTTAGAGCTACTCGAGGGGGT back to top
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