mRNA_H-paniculata_contig4395.11137.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4395.11137.1 vs. uniprot
Match: D7FMA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMA1_ECTSI) HSP 1 Score: 608 bits (1569), Expect = 4.940e-186 Identity = 355/599 (59.27%), Postives = 430/599 (71.79%), Query Frame = 1
Query: 2131 ASVVSAETDVAVTLDAAPTPLSQRERDENVLRAHLASWRFCFHEAAALLTPVLGAGNVETPHGGVSETAAREV--DSGTAGGANGGLATAGGFLVAPSEEIDLQSELWGKLVQAEALMLQTMLSMSSGATKDTVAACQAVSETLEVSLPSSQNKSTLQEEIAIKLAGAADVVRSKSPN-ARAAPPEALAAVSVAPTLAEQVSWRSVLIELEVLMVRVAMQLMAGQVIKAAATIRKVIKGSHWLLQAIEQDTKAAKKSRDKAQAAAAGG-VGLLQSLFFNKKPSIPANAAPTPRPG-----------------QRSDGSRDASGLGKNSVNGGSSGPQSNGEGGAGAHSLIEEAVPDDFAGRSWEGYLHHVNFLVALLHVGTSLMPKNLIKILGHYLGYTPSFERGLSLLASCCNKRGMRRPCAAAVLELLVFREVSKPALGSAGXXXXXXXXARDEAVARATALDTAQVALESFYSKFPVVPLLSVPHAKALQASGEFEEAYELCLMAQEVVDQSVLKGEGMGPAHDPHILWLQLAQSSFFLQRWERALDFFTRIVEGVSRVCEKDQRGMTGLSAAYAAASMCGVLPVKQEKIHKLMVV 3864
A+ + E A LDA P PL+Q ERDEN+LRAHLASWRFCFHEAAALLTPVLGAG VETP+G V DSG GGA FLV+ +EE+DL SELW KLVQAEALMLQTMLS+SSGA KDT+AAC+AVSE LEV LP S+++ T++++IA KLA AA+V RS P+ + +A +A AVS+ PTLAEQ +R++L+ELEVLMVRVAMQLMAG ++KAA + RK +K S+WLL+A + D K AK++RDKA VG++QS FF +K PA A G +RSDG R S N G++ +S + LIE AVP +FAGR W GYLHHV+F+VAL+HVGTSLMPK L+K++ H +GYTPSF++GLSLL+ CC+ +GMRRPCA AVLELLVFRE + +A A E +ARA ALD AQ ALESFY+ FPVVPLLSV HAKALQ SGE+EEAY+LCLMAQ+VVD+SV KG+GMGPAHDPH+LWLQLA SSFFLQRW RALD FTRIVEGV++ CE D+RG+TG SAAYAAAS CGV PVKQ ++HKL+ V
Sbjct: 1270 AAELPEEVATAAVLDAPP-PLTQAERDENILRAHLASWRFCFHEAAALLTPVLGAGYVETPNGTVGGXXXXXXXGDSGPVGGA---------FLVSSTEEVDLHSELWAKLVQAEALMLQTMLSVSSGANKDTMAACEAVSEALEVCLPPSKSRDTVRDDIAFKLAAAAEVTRSSRPDGSSSASQDAYEAVSLPPTLAEQ--FRALLMELEVLMVRVAMQLMAGHLLKAATSTRKFLKTSNWLLKAKDTDFKTAKRARDKAAXXXXXXXVGIIQSFFFKQKAPAPARPAAAAGRGSTRAVNGKVNGDLANGRKRSDGGRTGSSRFSNGSAPGTADEES--------YRLIEGAVPTEFAGRDWVGYLHHVDFIVALMHVGTSLMPKGLVKLIEHVVGYTPSFDKGLSLLSGCCSTKGMRRPCAVAVLELLVFRERR---VSTASIHRVGGGGAGAEMMARAVALDNAQGALESFYASFPVVPLLSVAHAKALQTSGEYEEAYDLCLMAQKVVDESVEKGDGMGPAHDPHVLWLQLAFSSFFLQRWSRALDVFTRIVEGVTQACENDKRGLTGFSAAYAAASTCGVQPVKQGEVHKLIDV 1845
BLAST of mRNA_H-paniculata_contig4395.11137.1 vs. uniprot
Match: A0A6H5KT18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT18_9PHAE) HSP 1 Score: 578 bits (1491), Expect = 3.640e-173 Identity = 370/719 (51.46%), Postives = 452/719 (62.87%), Query Frame = 1
Query: 2017 AAVVEEGVSSTD-ENGTGVTTPVTTPMDKDQALELDIPYASVVSAETDVAVTLDAAPTPLSQRERDENVLRAHLASWRFCFHEAAALLTPVLGAGNVETPHGGVSETAAREVDSGTAGGANGGLA--TAGGFLVAPSEEIDLQSELWGKLVQAEALMLQTMLSMSSGATKDTVAACQAVSETLEVSLPSSQNKSTLQEEIAIKLAGAADVVRSKSPN-ARAAPPEALAAVSVAPTLAEQVSWRSVLIELEVLMVRVAMQLMAGQVIKAAATIRKVIKGSHWLLQAIEQDTKAAKKSRDKAQAAAAG-GVGLLQSLFFNKK---PSIPANAAPTPRPGQRSDGSRDASGL--GKNSVNGGSSGPQ------SNGEGGAGAHSLIEEAVPDDFAGRSWEGYLHHVNFLVALLHVGTSLMPKNLIKILGHYLGYTPSFERGLSLLASCCNKRGMRRPCAAAVLELLVFREVS------------KPA-------------------------LGSAGXXXXXXXXARD----------------------------------------------------EAVARATALDTAQVALESFYSKFPVVPLLSVPHAKALQASGEFEEAYELCLMAQEVVDQSVLKGEGMGPAHDPHILWLQLAQSSFFLQRWERALDFFTRIVEGVSRVCEKDQRGMTGLSAAYAAASMCGVLPVKQEKIHKLM 3858
AA VE+G ++ D +G G D A S + E + LD P PL+Q ERDEN+LRAHLASWRFCFHEAAALLTPVLGAG VETP+G V GG NGG + GGF+V+ +EE+DL SELW KLVQAEALMLQTMLS+SSGA KDT+AAC+AVSE LEVSLP S+++ T++++IA KLA AA+V R P + +A +A AVS+ PTLAEQ S+LIELEVLMVRVAMQLMAG ++KAA++ RK +K S+WLL+A + D K AK++RDKA AAAA GVG++QS FF +K P+ PA A R R+ + GL G+ + G SGP + G ++ LIE AVP +FAGR W GYLHHV+F+VAL+HVGTSLMPK L+K++ +GY PSF++GLSLL+ CC+ +GMRRPCA AVLELLVFRE+ KPA G A XXX E +ARA ALD AQ AL+SFY+ FPVVPLLSV HAKALQ SGE+EEAYELC++AQ+VVD+SV KG+GMGPAHDPH+LWLQL SSFFLQRW ALD FTRIVEGV++ CE D+RG+TG SAAYAAASMCGV PVKQ ++HKL+
Sbjct: 1528 AAAVEDGATTKDVADGGGALEVSIRAKDGVVAXXXXXXXXSELPEEVATSAVLDFPP-PLTQAERDENILRAHLASWRFCFHEAAALLTPVLGAGYVETPNGTVG------------GGRNGGDSGPIGGGFMVSSTEEVDLHSELWAKLVQAEALMLQTMLSVSSGANKDTMAACEAVSEALEVSLPPSRSRETVRDDIAFKLAAAAEVTRPSRPGGSSSASQDAYEAVSLPPTLAEQ----SLLIELEVLMVRVAMQLMAGHMLKAASSTRKFLKTSNWLLKAKDTDFKTAKRARDKAAAAAASSGVGIIQSFFFKQKAPAPARPAAAVAAGRSSARAVNGKANGGLANGRKRSDSGRSGPSRFLNGCAQGAADEESYRLIEGAVPTEFAGRDWVGYLHHVDFIVALMHVGTSLMPKGLVKLIEQMVGYAPSFDKGLSLLSGCCSTKGMRRPCAVAVLELLVFRELKRETKLMKAAKAVKPASSRVPQNGGDDSAVSGKRGFRRRIQFGQAAAVCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGXXXXXXGAEMMARAVALDNAQGALDSFYASFPVVPLLSVAHAKALQTSGEYEEAYELCVVAQKVVDESVEKGDGMGPAHDPHVLWLQLGFSSFFLQRWSPALDAFTRIVEGVTQACENDKRGLTGFSAAYAAASMCGVQPVKQGEVHKLI 2229 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4395.11137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4395.11137.1 >prot_H-paniculata_contig4395.11137.1 ID=prot_H-paniculata_contig4395.11137.1|Name=mRNA_H-paniculata_contig4395.11137.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1289bp RCSTTTKLTANALKKLGPSSRSPALAAPEARESNDCSLASKPSQGYWGQHback to top mRNA from alignment at H-paniculata_contig4395:311..15738+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4395.11137.1 ID=mRNA_H-paniculata_contig4395.11137.1|Name=mRNA_H-paniculata_contig4395.11137.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=15428bp|location=Sequence derived from alignment at H-paniculata_contig4395:311..15738+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4395:311..15738+ >mRNA_H-paniculata_contig4395.11137.1 ID=mRNA_H-paniculata_contig4395.11137.1|Name=mRNA_H-paniculata_contig4395.11137.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=7734bp|location=Sequence derived from alignment at H-paniculata_contig4395:311..15738+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |