mRNA_H-paniculata_contig43942.11136.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43942.11136.1
Unique NamemRNA_H-paniculata_contig43942.11136.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43942.11136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43942contigH-paniculata_contig43942:2..1211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1210
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43942.11136.1prot_H-paniculata_contig43942.11136.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43942 650..1024 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930327.5879793-UTR-H-paniculata_contig43942:1..6491622930327.5879793-UTR-H-paniculata_contig43942:1..649Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig43942 2..649 +
1691481243.290369-UTR-H-paniculata_contig43942:1..6491691481243.290369-UTR-H-paniculata_contig43942:1..649Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig43942 2..649 +
1622930327.6170871-UTR-H-paniculata_contig43942:1024..12111622930327.6170871-UTR-H-paniculata_contig43942:1024..1211Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig43942 1025..1211 +
1691481243.3065786-UTR-H-paniculata_contig43942:1024..12111691481243.3065786-UTR-H-paniculata_contig43942:1024..1211Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig43942 1025..1211 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930327.6001325-CDS-H-paniculata_contig43942:649..10241622930327.6001325-CDS-H-paniculata_contig43942:649..1024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43942 650..1024 +
1691481243.29866-CDS-H-paniculata_contig43942:649..10241691481243.29866-CDS-H-paniculata_contig43942:649..1024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43942 650..1024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43942.11136.1

>prot_H-paniculata_contig43942.11136.1 ID=prot_H-paniculata_contig43942.11136.1|Name=mRNA_H-paniculata_contig43942.11136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MSVHLEGLEYREVEGIEIWVCDNGATKHMTSDPNFLCSYQECKGRVRLAD
GKHLPIEGVGVLFISFRFDSKGVLLMKFTQVAHVPLLSHHLPSLGRFADS
GDEYRFSRKGLRINLKTGRVLCAE*
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mRNA from alignment at H-paniculata_contig43942:2..1211+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43942.11136.1 ID=mRNA_H-paniculata_contig43942.11136.1|Name=mRNA_H-paniculata_contig43942.11136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1210bp|location=Sequence derived from alignment at H-paniculata_contig43942:2..1211+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTGCAGTTTACAGTATTCCCCGTTCTCTTCTTGAAAATAGATTCTCCA
TCTCACGAACACTCTGTTGAATCCGGGTGGGAAAACTACCCCATAATATC
GGACGGGGCTCAAGAAGTGCCTTCTCGCAGATAAAAGTTTGTGAGACAGC
GATGAGTTGGCCCATTTGTTTCGCAAGCATTATGAGATGTTTGTGAAGCA
CCAGCCCAAGAGACGTGACGCTGAAAACGCTATGGTTTTTATGGGTTCCA
AGAAAGGTGGGAGGCGGCGGCACATCGGGGCCAAATCGGAGAAATCCGCC
ATCAAATCCCACCAGCTCGCTGATGAACATGATTGTTGTGCCGCAGCCGA
GATCGAGCTTGAACCTGAAGAGGCCCTCATAGTGGATCTTGGCAAATACG
AGTTAGCGCTCACTGGTTCAATAGGTTGATTGCTATTGGGTTCGACTCCC
GTCATGTTCATAGTAGCTAGTGGAGTTAACCTTGAACATATAGGCTTGCA
AGGAGAGATGAACCCCGGAGATCTCTGATGTGAACATGACGGGCCGTGCC
AACACCATGTATTTTGCTCAATAGGTTACTTGCCTCCTTTTGAACAGTTC
ATTACGGCATACACTGCGTCGGCTCCTACTACAGGCAAGGAAGAAGTTAT
GTCTGTGCATTTAGAGGGGTTGGAATATCGTGAGGTGGAGGGGATAGAAA
TTTGGGTGTGTGATAATGGGGCAACGAAGCACATGACTAGTGACCCTAAT
TTTCTTTGTAGTTACCAGGAATGTAAAGGGCGTGTTCGCCTCGCTGATGG
TAAACATCTTCCTATCGAAGGAGTTGGAGTTTTGTTCATCAGCTTTCGTT
TTGACTCTAAAGGAGTATTATTGATGAAATTTACTCAAGTTGCTCACGTA
CCTCTTCTGAGTCATCACCTCCCATCTTTAGGTAGATTCGCGGACTCTGG
TGACGAATATAGGTTCTCCCGTAAAGGGCTAAGAATTAACCTGAAAACTG
GGAGAGTTCTGTGTGCTGAATGATTTGGCAGCCTTGATATGATTGTTCAA
TAGATTAATTGCCACCTTATGAGCAGTGATCAGAGGGACACGAGTTTGTA
TCGAAGATAGTGCTCTTGCAACGATAGCCCCGTCTCGCCTAGCAGTCGAT
TCTTCTACTCACCACGTGGACATCAACGCTCTTCACTGTTCCTTTGGTCA
TGCGAACGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig43942:2..1211+

>mRNA_H-paniculata_contig43942.11136.1 ID=mRNA_H-paniculata_contig43942.11136.1|Name=mRNA_H-paniculata_contig43942.11136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig43942:2..1211+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGTGCATTTAGAGGGGTTGGAATATCGTGAGGTGGAGGGGATAGA
AATTTGGGTGTGTGATAATGGGGCAACGAAGCACATGACTAGTGACCCTA
ATTTTCTTTGTAGTTACCAGGAATGTAAAGGGCGTGTTCGCCTCGCTGAT
GGTAAACATCTTCCTATCGAAGGAGTTGGAGTTTTGTTCATCAGCTTTCG
TTTTGACTCTAAAGGAGTATTATTGATGAAATTTACTCAAGTTGCTCACG
TACCTCTTCTGAGTCATCACCTCCCATCTTTAGGTAGATTCGCGGACTCT
GGTGACGAATATAGGTTCTCCCGTAAAGGGCTAAGAATTAACCTGAAAAC
TGGGAGAGTTCTGTGTGCTGAATGAATGTCTGTGCATTTAGAGGGGTTGG
AATATCGTGAGGTGGAGGGGATAGAAATTTGGGTGTGTGATAATGGGGCA
ACGAAGCACATGACTAGTGACCCTAATTTTCTTTGTAGTTACCAGGAATG
TAAAGGGCGTGTTCGCCTCGCTGATGGTAAACATCTTCCTATCGAAGGAG
TTGGAGTTTTGTTCATCAGCTTTCGTTTTGACTCTAAAGGAGTATTATTG
ATGAAATTTACTCAAGTTGCTCACGTACCTCTTCTGAGTCATCACCTCCC
ATCTTTAGGTAGATTCGCGGACTCTGGTGACGAATATAGGTTCTCCCGTA
AAGGGCTAAGAATTAACCTGAAAACTGGGAGAGTTCTGTGTGCTGAATGA
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