mRNA_H-paniculata_contig4391.11134.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4391.11134.1
Unique NamemRNA_H-paniculata_contig4391.11134.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4391.11134.1 vs. uniprot
Match: D7FS76_ECTSI (Magnesium transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS76_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 2.120e-21
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 1
Query:    1 QDINSASNVLDLLQARVRSTEALVMVKLDIARNRILTAGLIFSMGSTCFTLGTLISGLFGTNV 189
            QDINS  NVL+LL  R RSTEALVMVKLDIARNRILTAGL+FSM STC T+G L+SG+FG N+
Sbjct:  197 QDINSIYNVLELLLNRARSTEALVMVKLDIARNRILTAGLVFSMASTCLTVGALVSGIFGMNL 259          
BLAST of mRNA_H-paniculata_contig4391.11134.1 vs. uniprot
Match: A0A6H5JWS6_9PHAE (Magnesium transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS6_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 2.330e-21
Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 1
Query:    1 QDINSASNVLDLLQARVRSTEALVMVKLDIARNRILTAGLIFSMGSTCFTLGTLISGLFGTNV 189
            QDINS  NVL+LLQ R RSTEALVMVKLDIARNRILTAGL+FSM STC T G L+SG+FG N+
Sbjct:  459 QDINSIYNVLELLQNRARSTEALVMVKLDIARNRILTAGLVFSMASTCLTAGALVSGIFGMNL 521          
BLAST of mRNA_H-paniculata_contig4391.11134.1 vs. uniprot
Match: A0A835YW71_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW71_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 6.230e-11
Identity = 34/66 (51.52%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 QDINSASNVLDLLQARVRSTEALVM---VKLDIARNRILTAGLIFSMGSTCFTLGTLISGLFGTNV 189
            Q+I S SNVL+ + +R+R+TE L+    VKLDIARN++LTA  IFS+ + C + G +I+GLFG N+
Sbjct:   88 QEITSLSNVLEGMGSRMRNTETLIQARDVKLDIARNQLLTASTIFSLVAMCLSFGAVITGLFGMNL 153          
BLAST of mRNA_H-paniculata_contig4391.11134.1 vs. uniprot
Match: A0A662X5B8_9STRA (Magnesium transporter n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X5B8_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 4.450e-8
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    1 QDINSASNVLDLLQARVRSTEALVMVKLDIARNRILTAGLIFSMGSTCFTLGTLISGLFGTNV 189
            QDI S     +L+Q R+ +TE+LV +KLD  RN +L   LIFS+ +   ++GTLISGLFGTN+
Sbjct:  251 QDIFSTRTRAELMQHRITNTESLVTLKLDSKRNYLLGVQLIFSLVAINISVGTLISGLFGTNL 313          
BLAST of mRNA_H-paniculata_contig4391.11134.1 vs. uniprot
Match: W7T887_9STRA (Metal ion transporter family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T887_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 7.690e-8
Identity = 27/62 (43.55%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    4 DINSASNVLDLLQARVRSTEALVMVKLDIARNRILTAGLIFSMGSTCFTLGTLISGLFGTNV 189
            D N      +L++  +++TE  V VKLD+ARN++LT G +F++ + CF  G LISG+FG N+
Sbjct:  195 DFNEMIMKWELIKEDMQNTENYVQVKLDMARNKLLTIGTLFALVNVCFAFGALISGIFGMNL 256          
BLAST of mRNA_H-paniculata_contig4391.11134.1 vs. uniprot
Match: A0A4D9CUN0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUN0_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 8.710e-8
Identity = 27/62 (43.55%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    4 DINSASNVLDLLQARVRSTEALVMVKLDIARNRILTAGLIFSMGSTCFTLGTLISGLFGTNV 189
            D N      +L++  +++TE  V VKLD+ARN++LT G +F++ + CF  G LISG+FG N+
Sbjct:  550 DFNEMIMKWELIKEDMQNTENYVQVKLDMARNKLLTIGTLFALVNVCFAFGALISGIFGMNL 611          
BLAST of mRNA_H-paniculata_contig4391.11134.1 vs. uniprot
Match: A0A8K1CGQ0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGQ0_PYTOL)

HSP 1 Score: 56.2 bits (134), Expect = 1.160e-7
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    1 QDINSASNVLDLLQARVRSTEALVMVKLDIARNRILTAGLIFSMGSTCFTLGTLISGLFGTNV 189
            +DI +     +LLQ RV+STE+L+ +KLD ARN +L   LIFS+      +GTLI+G+FG N+
Sbjct:  267 KDIYTTRTKSELLQHRVQSTESLITMKLDYARNYLLALQLIFSLAGVGLGVGTLIAGIFGMNL 329          
BLAST of mRNA_H-paniculata_contig4391.11134.1 vs. uniprot
Match: A0A662Y750_9STRA (Magnesium transporter (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y750_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 3.010e-7
Identity = 30/63 (47.62%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    1 QDINSASNVLDLLQARVRSTEALVMVKLDIARNRILTAGLIFSMGSTCFTLGTLISGLFGTNV 189
            QDI S     +L+Q R+ +TE+L+ +KLD  RN +L   LIFS+ +   ++GTLISG+FGTN+
Sbjct:  358 QDIFSTRTRAELMQHRITNTESLMTLKLDSKRNYLLGVQLIFSLVAINISVGTLISGVFGTNL 420          
BLAST of mRNA_H-paniculata_contig4391.11134.1 vs. uniprot
Match: A0A7S3Y961_HETAK (Magnesium transporter n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y961_HETAK)

HSP 1 Score: 54.3 bits (129), Expect = 5.350e-7
Identity = 24/63 (38.10%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    1 QDINSASNVLDLLQARVRSTEALVMVKLDIARNRILTAGLIFSMGSTCFTLGTLISGLFGTNV 189
            Q+  ++ N L++LQ+++ + E+LV++KLD+ARN++LTA  IF++ S C   G+    + G N+
Sbjct:  219 QEFGTSYNRLEILQSKLENAESLVLMKLDVARNKLLTASTIFALVSMCTGFGSFFGSIMGMNL 281          
BLAST of mRNA_H-paniculata_contig4391.11134.1 vs. uniprot
Match: A0A8K1FGW3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FGW3_PYTOL)

HSP 1 Score: 53.1 bits (126), Expect = 1.430e-6
Identity = 26/63 (41.27%), Postives = 42/63 (66.67%), Query Frame = 1
Query:    1 QDINSASNVLDLLQARVRSTEALVMVKLDIARNRILTAGLIFSMGSTCFTLGTLISGLFGTNV 189
            Q+I++    + LLQ R+ +TE+ VM+KLD ARN +LT  ++FS+ +  FT G  ++  FG N+
Sbjct:  305 QEIHTICTKIKLLQDRIHNTESHVMLKLDSARNHLLTVDVLFSLLTVSFTFGMFVTAAFGMNL 367          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4391.11134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FS76_ECTSI2.120e-2176.19Magnesium transporter n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JWS6_9PHAE2.330e-2177.78Magnesium transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A835YW71_9STRA6.230e-1151.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A662X5B8_9STRA4.450e-850.79Magnesium transporter n=1 Tax=Nothophytophthora sp... [more]
W7T887_9STRA7.690e-843.55Metal ion transporter family n=1 Tax=Nannochlorops... [more]
A0A4D9CUN0_9STRA8.710e-843.55Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A8K1CGQ0_PYTOL1.160e-747.62Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662Y750_9STRA3.010e-747.62Magnesium transporter (Fragment) n=1 Tax=Nothophyt... [more]
A0A7S3Y961_HETAK5.350e-738.10Magnesium transporter n=1 Tax=Heterosigma akashiwo... [more]
A0A8K1FGW3_PYTOL1.430e-641.27Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4391contigH-paniculata_contig4391:14757..14945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.4e-16
Seed eggNOG ortholog2880.D7FS76
KEGG koko:K16075
KEGG TC1.A.35.5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.magnesium ion transmembrane transporter activity
EggNOG OGsKOG2662@1,KOG2662@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930327.4007542-CDS-H-paniculata_contig4391:14756..149451622930327.4007542-CDS-H-paniculata_contig4391:14756..14945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4391 14757..14945 -
1691481243.2310572-CDS-H-paniculata_contig4391:14756..149451691481243.2310572-CDS-H-paniculata_contig4391:14756..14945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4391 14757..14945 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4391.11134.1prot_H-paniculata_contig4391.11134.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4391 14757..14945 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4391.11134.1

>prot_H-paniculata_contig4391.11134.1 ID=prot_H-paniculata_contig4391.11134.1|Name=mRNA_H-paniculata_contig4391.11134.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
QDINSASNVLDLLQARVRSTEALVMVKLDIARNRILTAGLIFSMGSTCFT
LGTLISGLFGTNV
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mRNA from alignment at H-paniculata_contig4391:14757..14945-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4391.11134.1 ID=mRNA_H-paniculata_contig4391.11134.1|Name=mRNA_H-paniculata_contig4391.11134.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=189bp|location=Sequence derived from alignment at H-paniculata_contig4391:14757..14945- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACATCAACTCGGCGTCCAACGTGTTAGACCTGCTGCAGGCACGAGT GCGTAGCACGGAGGCGTTGGTGATGGTAAAGCTGGACATCGCCCGGAATA GGATTCTGACCGCGGGTCTGATTTTCAGTATGGGTTCGACGTGCTTCACG CTAGGCACGCTCATCTCGGGATTGTTCGGTACGAATGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig4391:14757..14945-

>mRNA_H-paniculata_contig4391.11134.1 ID=mRNA_H-paniculata_contig4391.11134.1|Name=mRNA_H-paniculata_contig4391.11134.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig4391:14757..14945- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACATCAACTCGGCGTCCAACGTGTTAGACCTGCTGCAGGCACGAGT
GCGTAGCACGGAGGCGTTGGTGATGGTAAAGCTGGACATCGCCCGGAATA
GGATTCTGACCGCGGGTCTGATTTTCAGTATGGGTTCGACGTGCTTCACG
CTAGGCACGCTCATCTCGGGATTGTTCGGTACGAATGTTCAGGACATCAA
CTCGGCGTCCAACGTGTTAGACCTGCTGCAGGCACGAGTGCGTAGCACGG
AGGCGTTGGTGATGGTAAAGCTGGACATCGCCCGGAATAGGATTCTGACC
GCGGGTCTGATTTTCAGTATGGGTTCGACGTGCTTCACGCTAGGCACGCT
CATCTCGGGATTGTTCGGTACGAATGTT
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