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Homology
BLAST of mRNA_H-paniculata_contig439.11131.1 vs. uniprot
Match: D7FKT5_ECTSI (Alpha-L-fucosidase, family GH95 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT5_ECTSI) HSP 1 Score: 172 bits (436), Expect = 4.910e-44 Identity = 148/390 (37.95%), Postives = 180/390 (46.15%), Query Frame = 1
Query: 1 GYIRHLHLNNGTAEASFHS----------------TTEGSGSSRRIHSREAFASNVDGVLAMRYRCVEEDGGQGCLGLQLTPKRQGSSHNTEAWQLPPLSDLQTEKEGQEKTDHHQSRHGAGAYVGVFRLPG--GPKAEMGFHMCVAVFPSGNGGSLGLGRVGTGS-VLTEEFELPVKTGAAAAERPGRRHDRDGLIHGLDDADRVKREL-------TPGGMPPAR------RRSRRDVRGGDS---ALPGDPALAKRKGHRISLPESFQVEEALVLVAIVTEDIVTLKARGEHKGWATTQLEQEQGVQRSEMHRHRVAPGTAGRSAEGGARTGGITTEETPVNEHTADNLLRSSCINRLQAAAGMGFDHLQRRHVHDVETLFGRVELTL 1065
GYIRHLHLNNGTAEA+F S + G R +H REAFASNVDGVLAMR C EE+ G+GCL L TPKRQG SH T A +LP GAGAYVG++R G G KAEMGFH+CVAVFPS VG GS V+TEE+ P P RH +G D + + +L PGG PPAR R + RGG S A P HRI+L + EA++LV++VTE+ KAR + +G T G LR C+ R++AAAG+GF+ L+RRHV DVE LF RV +L
Sbjct: 386 GYIRHLHLNNGTAEATFSSKGPPDSGGFGLGLGFGASRGQRERRLVHHREAFASNVDGVLAMRLSCKEEESGRGCLSLVATPKRQGKSHFTTAGRLPXXXXXXXXXXXXXXAGGDTVGWGAGAYVGLYRPSGRNGEKAEMGFHVCVAVFPS----------VGEGSGVVTEEYVDP--------SSPRERHRPEGPA---GDKETPEEKLMMARLADAPGG-PPARNAGMMARLAEGPSRGGPSQGNAGQAPPTRNPTPRHRIALSAAEASSEAMMLVSVVTEE----KARDD----------------------------------DGDDETEG----------------LRRRCLARVEAAAGLGFEELRRRHVEDVEGLFDRVHFSL 699
BLAST of mRNA_H-paniculata_contig439.11131.1 vs. uniprot
Match: A0A6H5K8P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8P7_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 2.260e-17 Identity = 100/308 (32.47%), Postives = 128/308 (41.56%), Query Frame = 1
Query: 193 TPKRQGSSHNTEAWQLPPLSDLQTEKEGQEKTDHHQSRHGAGAYVGVFRLPG--GPKAEMGFHMCVAVFPSGNGGSLGLGRVGTGS-VLTEEFELPVKTGAAAAERPGRRHDRDGLIHGLDDADRVKRELT-----PGGMPPARR------RSRRDVRGGDS---ALPGDPALAKRKGHRISLPESFQVEEALVLVAIVTEDIVTLKARGEHKGWATTQLEQEQGVQRSEMHRHRVAPGTAGRSAEGGARTGGITTEETPVNEHTADNLLRSSCINRLQAAAGMGFDHLQRRHVHDVETLFGRVELTL 1065
TP RQG SH TE +LP + GAGAYVG++R G G KAEMGFH+CVAVFPS VG GS V+ EE+ P P +RH +G G ++ K + PGG P AR GG + A P HRISL + EA++LV++VTE+ KAR + N+ T LR C+ R++AAAG+GF+ L+RRHV DVE LF RV L+L
Sbjct: 45 TPNRQGKSHFTEGGRLPXXXXXXXXXXXXXXAGGDTAGWGAGAYVGLYRPSGRNGEKAEMGFHVCVAVFPS----------VGEGSRVVAEEYVDP--------SSPRQRHRPEGPA-GDEETPEEKLMMARLADAPGGAP-ARNVGMXXXXXXXXXXGGPAQGNAGQAPPTRNPTPRHRISLSAAEASSEAMMLVSVVTEE----KAR------------------------------------------------DNDGNDETEG--LRRRCLGRVEAAAGLGFEELRRRHVEDVEGLFDRVHLSL 278
BLAST of mRNA_H-paniculata_contig439.11131.1 vs. uniprot
Match: A0A6H5K0Q6_9PHAE (GH95 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q6_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 3.100e-12 Identity = 43/78 (55.13%), Postives = 48/78 (61.54%), Query Frame = 1
Query: 1 GYIRHLHLNNGTAEASFHS------------------TTEGSGSSRRIHSREAFASNVDGVLAMRYRCVEEDGGQGCL 180
GYIRHLHLNNGTAEA+F S T+ G R +H REAFASNVDGVLAMR C EE+ G+GCL
Sbjct: 307 GYIRHLHLNNGTAEATFSSKGPPDSGGFGLXXXXXXXTSRGQREGRLVHRREAFASNVDGVLAMRLSCKEEESGRGCL 384
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 177.9 |
| Seed ortholog evalue | 8.1e-42 |
| Seed eggNOG ortholog | 2880.D7FKT5 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | 1,2-alpha-L-fucosidase activity |
| EggNOG OGs | 2CMG6@1,2QQ9E@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 4 |
| Model size | 1068 |
| Cds size | 1065 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig439.11131.1 >prot_H-paniculata_contig439.11131.1 ID=prot_H-paniculata_contig439.11131.1|Name=mRNA_H-paniculata_contig439.11131.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=355bp
GYIRHLHLNNGTAEASFHSTTEGSGSSRRIHSREAFASNVDGVLAMRYRC VEEDGGQGCLGLQLTPKRQGSSHNTEAWQLPPLSDLQTEKEGQEKTDHHQ SRHGAGAYVGVFRLPGGPKAEMGFHMCVAVFPSGNGGSLGLGRVGTGSVL TEEFELPVKTGAAAAERPGRRHDRDGLIHGLDDADRVKRELTPGGMPPAR RRSRRDVRGGDSALPGDPALAKRKGHRISLPESFQVEEALVLVAIVTEDI VTLKARGEHKGWATTQLEQEQGVQRSEMHRHRVAPGTAGRSAEGGARTGG ITTEETPVNEHTADNLLRSSCINRLQAAAGMGFDHLQRRHVHDVETLFGR VELTL back to topmRNA from alignment at H-paniculata_contig439:27681..31434+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig439.11131.1 ID=mRNA_H-paniculata_contig439.11131.1|Name=mRNA_H-paniculata_contig439.11131.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3754bp|location=Sequence derived from alignment at H-paniculata_contig439:27681..31434+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GGGTATATTCGGCACCTGCATCTTAATAACGGGACAGGTGATAAAAGGAA
GGGCCTTAGAGGGTTTTGGGGGAGTTTATACCTCGCGCGCGGAGGGGGAA
GGGCGGTGAGGGGGGGGGGGACCAGGGCAACCTCTGGCTGCTGAACAACA
GGACTTAACAGTCCTCCCAATCATAGAGCAGCCTCACGATTGTTTTCCAA
CATGAAAGTAAAAAACTTGTTTTCTCCCTTTTTATCACCCTACCCGCATT
AGAGAGGTATCATGATCCAGTTGGATCTTTGTTCATCTTCATATCCACGG
TTAGAAAGACTTGTTTCAAAATATTTGAATAGTGCCAAACGAGATTAGTA
CAAAACGATTGCGACTGTTTAAGCAGCAAAGATCGTCAAATGCGTCGCGG
CGCAGAGGAGCCTCTTCATTGCCACATGGGAATTCTCAATGGGGTGACAG
TTTTTTTATTCTAGTTTGATCAATACATGCACACAGCTTGTCAACAATGA
GAGCGCCCCTTCCCCCTGTTCCCCTGGTACCCTAAAAGAGTTATGGAGTA
CAGTCAATGAAAATGCCATGCTCCAACGGAAGACTGACTCCCGCGGAGAT
TGTGCTCGGGCTCCGTTGTTGAATCTATAGTATGTAGTGTGCAGCACACA
CAGTTTTCTTTGTAAGGAGAAAAAATTATTAGAGTTGATCTCCTTGGGGT
CGGAGACATGAGTCGGGCTACGGTAGGGGGGGAAGTTTTAACGAGCGCCG
CTCTGCATGGTGATTTGGAAGAAATTCAAATCAAAACCTATTCTTCAATG
GGTCGGGTTCACGCATCCCTAGAGATGCCCAATGGACGATTCAGAATGGC
TATTTTTTTTCAAGGACAAAATATTTTGCCGAGTCGCTCCCAGGAGCGGC
TCAAACTGTTGAACAAATGGGCTCAAAATACCGCCCCCCTGCTGTAGAGC
TCCGTCCTCCCGAGGACGCGTGGTCAATCGTATGGCAACTACGGCATGCG
AAACAAGAGTACGTCCTACCCTACCGTAGACTGACACACAACTACAAATG
TGACGTTCCGAAACGAGACATAAAATGCTCCTGGATGTTGTGCAGGAGAC
CGGGTTTTAGGAAGCAGCCCTCAGGAACACTGGGAATGTGCTCCCAAAGT
CAGAAATAATGAAAATTCACCCGTGTTCTGGCTCTTGGTACTTTTAACAT
CTACCACAGAGGCAGAAATGAAGAAATCTAGTTATTGTTAGAGCTGAACA
AGTGATGAATACACTAGGATGGAATACCCCCACCAAAAATTACCGTCTCG
CCACCTAGAGGGATGTCACTTGTTATCCATTGTATTTTGGACCAATCAGG
TCGGCTCTTTGAAGAAAGTTAACCGATCAATTATTTGCGGGCCACCTTCT
GTCTCTTTTTCTCTCTGTCTCTCCGTCTCTTTCTTTGATTTTTTGCTTGT
AATTGTCGTATTGAATATCCACATACTAATTTATTGAATTGAAAGTCTAG
CGCTGTTTTATTTCAAGACATTGAGTTATACATCTGTTTTCGTGTGTGAT
TCGTGTATGTTAGCGGAGGCGAGCTTCCACTCTACGACAGAGGGTTCGGG
GAGTTCACGACGGATTCATTCTAGGGAGGCGTTTGCGAGCAATGTGGACG
GGGTGTTGGCGATGCGATATCGCTGTGTGGAGGAAGACGGAGGGCAAGGT
TGTCTCGGGTAAGTGGCAATTGGTTTTCAGCAGGGGGCGACGATAATCTA
TCTCCTGGCACACACACCCTTGCGAACCTGCACAATGCAAATCCGGGGCT
CATATTTGCCAAATACGGAGATATTTTCTCCCAATCATCAATCTCATAGT
GTCTACCATACCCGTGAATGTCAGCAGAATACTTGGTTTTACTGTGGTGT
ACCTTCTGCAGACCATTGCCTAGATTTTGCGGCTCATAGAATGTGACGTT
TGACTGTATGTTTGTACTGACTCGCTGTACTGAGCTCCATGGATCCCCTA
GTGTAACTGCCTCGTTTTCAAGCTCTCAACCCCCTCGTGCGATTTTCAAT
TTTTACTGTCATGTTCAGTTTCTCACTCGCGTGTTCTGCCCAAAGCAGCC
TCACACTCCGTCCTGCCCCCTTTCCTCTCACTTTTGTTTGTTTGTGGGTC
CGATAACTCATCAACGTTTCTTGAGCCCGGGGTTATCGTGTGACTGTTAT
TTCTACGCTGACCTTTGTCCCCCCCCCCCCCCTTTCCGTGATAGCCTCCA
GCTGACTCCAAAACGGCAAGGCAGTTCCCATAACACAGAAGCCTGGCAAC
TTCCACCTCTCTCGGATCTCCAAACCGAAAAAGAAGGCCAGGAAAAGACT
GATCATCACCAAAGCCGACATGGGGCTGGGGCGTACGTGGGCGTTTTCCG
ACTCCCAGGAGGTCCGAAAGCTGAGATGGGTTTTCACATGTGCGTTGCCG
TTTTTCCTTCGGGGAATGGGGGAAGCTTGGGCCTGGGACGAGTGGGAACG
GGGAGCGTTTTGACGGAAGAGTTTGAGCTCCCGGTGAAGACGGGGGCGGC
GGCGGCTGAGCGACCTGGTAGAAGGCACGATCGTGATGGATTAATACATG
GGTTGGATGATGCGGACAGGGTTAAGAGGGAGGTGTGTTGTTTTTGATGG
GGGGGGCGTACTCAAGTTTTTCATGTCGTAGTTGTTCAACCGTTGACCAC
GCGTCCTCCGGAGGACGGAGCTTTGTTCCTATCAGAGCGATTTCAAATGG
CCAGTGGCTCTTTCCTACATTGCCAAATGTGGCTCAAAACTGTTTACTTA
CATTCTCTACCTCAAACCTCGTGTATTCAGACCAATTAAGATAGCCTAGA
ATTGCTATAGCCGTCTTTTCGCTATCCCAGGGTTCAAACACCTCTATATC
GTTGTTTTCGAGGGCGGGGGTAGGTTGGTAAGGGTATGAACGTGGACCGG
TGATTCAAATCTTACACGCATGCAACGGTAAAGTTGCAAGAGTAAACTTG
AGGGTGTTCGTGCTGGATCGATTGATCGTTCGAATCTTCGAACGCGTGGC
GTCCGTGGTATCGATAAACAGGTGATATAGTAACGGTGATGTGTGCAACT
TTAAAGGCAGCGCGTTTACAGTAGGTGTTTCTTTGTTGCCGTAAGAATAC
AGCGTGAACTAGTGCGGTTCTGCCCAACCTACACTTTCTTCTACCCTTCC
CTCGATTGCTCTCTCCCACCCGGGTTCTATCCCGTTTTCTCTGCGCCGGT
TTCGCAGCTCACTCCGGGAGGAATGCCTCCTGCGCGCAGGCGTTCGCGCA
GGGACGTACGAGGAGGCGACAGCGCGCTGCCTGGCGACCCCGCACTAGCA
AAACGCAAGGGACATCGTATTTCACTCCCGGAAAGTTTCCAAGTCGAAGA
GGCATTGGTTCTTGTGGCTATTGTCACAGAAGATATCGTCACGTTAAAAG
CACGAGGCGAACACAAAGGCTGGGCGACGACCCAACTGGAACAAGAACAA
GGAGTGCAACGGAGCGAGATGCATCGGCACAGGGTAGCGCCGGGGACAGC
GGGGAGGTCGGCGGAAGGTGGTGCACGAACCGGCGGTATTACCACCGAAG
AAACTCCCGTTAACGAACATACCGCCGACAATCTCTTAAGAAGCTCGTGC
ATAAACAGACTACAAGCCGCCGCAGGCATGGGGTTCGACCACCTCCAGAG
ACGGCATGTACACGATGTGGAGACGCTGTTCGGCAGGGTGGAGCTCACGC
TCGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig439:27681..31434+ >mRNA_H-paniculata_contig439.11131.1 ID=mRNA_H-paniculata_contig439.11131.1|Name=mRNA_H-paniculata_contig439.11131.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2130bp|location=Sequence derived from alignment at H-paniculata_contig439:27681..31434+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GGGTATATTCGGCACCTGCATCTTAATAACGGGACAGGGGTATATTCGGC ACCTGCATCTTAATAACGGGACAGCGGAGGCGAGCTTCCACTCTACGACA GAGGGTTCGGGGAGTTCACGACGGATTCATTCTAGGGAGGCGTTTGCGAG CAATGTGGACGGGGTGTTGGCGATGCGATATCGCTGTGTGGAGGAAGACG GAGGGCAAGGTTGTCTCGGCGGAGGCGAGCTTCCACTCTACGACAGAGGG TTCGGGGAGTTCACGACGGATTCATTCTAGGGAGGCGTTTGCGAGCAATG TGGACGGGGTGTTGGCGATGCGATATCGCTGTGTGGAGGAAGACGGAGGG CAAGGTTGTCTCGGCCTCCAGCTGACTCCAAAACGGCAAGGCAGTTCCCA TAACACAGAAGCCTGGCAACTTCCACCTCTCTCGGATCTCCAAACCGAAA AAGAAGGCCAGGAAAAGACTGATCATCACCAAAGCCGACATGGGGCTGGG GCGTACGTGGGCGTTTTCCGACTCCCAGGAGGTCCGAAAGCTGAGATGGG TTTTCACATGTGCGTTGCCGTTTTTCCTTCGGGGAATGGGGGAAGCTTGG GCCTGGGACGAGTGGGAACGGGGAGCGTTTTGACGGAAGAGTTTGAGCTC CCGGTGAAGACGGGGGCGGCGGCGGCTGAGCGACCTGGTAGAAGGCACGA TCGTGATGGATTAATACATGGGTTGGATGATGCGGACAGGGTTAAGAGGG AGCCTCCAGCTGACTCCAAAACGGCAAGGCAGTTCCCATAACACAGAAGC CTGGCAACTTCCACCTCTCTCGGATCTCCAAACCGAAAAAGAAGGCCAGG AAAAGACTGATCATCACCAAAGCCGACATGGGGCTGGGGCGTACGTGGGC GTTTTCCGACTCCCAGGAGGTCCGAAAGCTGAGATGGGTTTTCACATGTG CGTTGCCGTTTTTCCTTCGGGGAATGGGGGAAGCTTGGGCCTGGGACGAG TGGGAACGGGGAGCGTTTTGACGGAAGAGTTTGAGCTCCCGGTGAAGACG GGGGCGGCGGCGGCTGAGCGACCTGGTAGAAGGCACGATCGTGATGGATT AATACATGGGTTGGATGATGCGGACAGGGTTAAGAGGGAGCTCACTCCGG GAGGAATGCCTCCTGCGCGCAGGCGTTCGCGCAGGGACGTACGAGGAGGC GACAGCGCGCTGCCTGGCGACCCCGCACTAGCAAAACGCAAGGGACATCG TATTTCACTCCCGGAAAGTTTCCAAGTCGAAGAGGCATTGGTTCTTGTGG CTATTGTCACAGAAGATATCGTCACGTTAAAAGCACGAGGCGAACACAAA GGCTGGGCGACGACCCAACTGGAACAAGAACAAGGAGTGCAACGGAGCGA GATGCATCGGCACAGGGTAGCGCCGGGGACAGCGGGGAGGTCGGCGGAAG GTGGTGCACGAACCGGCGGTATTACCACCGAAGAAACTCCCGTTAACGAA CATACCGCCGACAATCTCTTAAGAAGCTCGTGCATAAACAGACTACAAGC CGCCGCAGGCATGGGGTTCGACCACCTCCAGAGACGGCATGTACACGATG TGGAGACGCTGTTCGGCAGGGTGGAGCTCACGCTCCTCACTCCGGGAGGA ATGCCTCCTGCGCGCAGGCGTTCGCGCAGGGACGTACGAGGAGGCGACAG CGCGCTGCCTGGCGACCCCGCACTAGCAAAACGCAAGGGACATCGTATTT CACTCCCGGAAAGTTTCCAAGTCGAAGAGGCATTGGTTCTTGTGGCTATT GTCACAGAAGATATCGTCACGTTAAAAGCACGAGGCGAACACAAAGGCTG GGCGACGACCCAACTGGAACAAGAACAAGGAGTGCAACGGAGCGAGATGC ATCGGCACAGGGTAGCGCCGGGGACAGCGGGGAGGTCGGCGGAAGGTGGT GCACGAACCGGCGGTATTACCACCGAAGAAACTCCCGTTAACGAACATAC CGCCGACAATCTCTTAAGAAGCTCGTGCATAAACAGACTACAAGCCGCCG CAGGCATGGGGTTCGACCACCTCCAGAGACGGCATGTACACGATGTGGAG ACGCTGTTCGGCAGGGTGGAGCTCACGCTC back to top
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