mRNA_H-paniculata_contig439.11129.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig439.11129.1
Unique NamemRNA_H-paniculata_contig439.11129.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig439.11129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig439contigH-paniculata_contig439:16805..18630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size237
Cds size189
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig439.11129.1prot_H-paniculata_contig439.11129.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig439 16852..18630 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930326.4373524-UTR-H-paniculata_contig439:16804..168511622930326.4373524-UTR-H-paniculata_contig439:16804..16851Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig439 16805..16851 +
1691481242.7728288-UTR-H-paniculata_contig439:16804..168511691481242.7728288-UTR-H-paniculata_contig439:16804..16851Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig439 16805..16851 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930326.456806-CDS-H-paniculata_contig439:16851..168951622930326.456806-CDS-H-paniculata_contig439:16851..16895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig439 16852..16895 +
1691481242.782235-CDS-H-paniculata_contig439:16851..168951691481242.782235-CDS-H-paniculata_contig439:16851..16895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig439 16852..16895 +
1622930326.4705763-CDS-H-paniculata_contig439:17580..176891622930326.4705763-CDS-H-paniculata_contig439:17580..17689Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig439 17581..17689 +
1691481242.7938962-CDS-H-paniculata_contig439:17580..176891691481242.7938962-CDS-H-paniculata_contig439:17580..17689Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig439 17581..17689 +
1622930326.4862814-CDS-H-paniculata_contig439:18594..186301622930326.4862814-CDS-H-paniculata_contig439:18594..18630Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig439 18595..18630 +
1691481242.8049774-CDS-H-paniculata_contig439:18594..186301691481242.8049774-CDS-H-paniculata_contig439:18594..18630Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig439 18595..18630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig439.11129.1

>prot_H-paniculata_contig439.11129.1 ID=prot_H-paniculata_contig439.11129.1|Name=mRNA_H-paniculata_contig439.11129.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
MGPRFAHLRRRQYGRRIPGGMPGKRNSRCTSLVRWLCIICICTLVSLWAT
TVFLVVRSPPKPG
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mRNA from alignment at H-paniculata_contig439:16805..18630+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig439.11129.1 ID=mRNA_H-paniculata_contig439.11129.1|Name=mRNA_H-paniculata_contig439.11129.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1826bp|location=Sequence derived from alignment at H-paniculata_contig439:16805..18630+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTGTCTGTAGTGTACAGCTCATCTCACCTCTAGGCAAGCACCGCAGATG
GGGCCACGATTCGCTCATCTGCGAAGACGTCAATATGGCAGGTAAGTTGT
GAATACAGTTCTCGGAGTACTATTTGCACGATATGGGAGACTGGCAGATG
AGGGAGGTATTGCGGTAGAAAACATCAGCAATTTGACCGCAAATAGGTTC
GATCCCGACTCTCTATAACGAGATATGTATCTCGTAGCCTCTTTTGATTT
GCTAGTTCTGCACATACAGCACGTTTGTGGTACCCGTTCTGCTTTGGCAG
AAATTTCTCCAAATTGGAACCGAGTCGGTGGCAAAGCAGTAGCCCACGAG
AAACGTTTCCTTCCCTTTGTTCCCGTGTGGAACGCAGATGTCGTCATATA
TCTATTCTACATGTACTGTCAAGCCGCGTGACTCGCCAACCTAAACTTTT
AAACTCCCACCGCGGCGGCGGCTGCTGGATCTTGCTGCAAAACGCTGTGC
TCGGTACTTGCGATTCATAGTTGACCAGGGAATCGGAACGGTTTATCCTT
TGCCAACGTAGCGAAGCCACGGCTTCTTGCTCCACTTTATTATCTGAGAA
TACTTATAATTGGGTTGTACGCGGAGCGAGTATGAATTAGCAATGTGATA
GGGGTGTTATTCACCGTCATGAGCGATGTATTTTTTGTTTTTAATTGAGC
TATTTCATGCAATTAGACGAGCCCCTGCAAATTATCATAATTCCGTTTTT
TCGCTCTCTTGGTATTACCGTTATAGGAGGATACCTGGAGGAATGCCCGG
GAAGCGTAACAGTCGGTGCACGTCCCTTGTGCGTTGGCTGTGCATCATAT
GCATTTGCACACTTGTTAGCCTCTGGGCGACCACGGTGAGGATACATGAA
TGCGTTGGTACTCGCGGGGTTTTCTTTATACTTGAACGTGCCCACCAAAA
TCTGACAGCACCGACCGCGAAGCAGTTATATTGATGAAAAGTATGACACA
AACCTACCGCGAACCGGTTCTGGTTCTGCTCATGTGTAAAAGTGACGTGT
GGTGCATGTCATCTATTGAAGCCCTGGATATTCGCGCAATTTCAAGCATT
CCTGTCGTGCATCTCGAGCTATCCACCGTAATTTCGCATGTGAGTAGGGC
GAGATGATGATTGATTTCGGTTGACATTTGCTATTTTGTTCTGTCATCCG
CAGTAGACCAGCAGGGCAAGATCTTTTCTGACACTTATACTGGGAATTTG
TCCAGTTTTCGTACATTAGCTCTATTTTGATGTTTCCACCAATTTTTATC
CAGCTAAAATATCCGTGATCCCGCGGGCAGGTACCTTAGGGGGAACTACT
CGCAGCTTTGGCGCCCATGTACCGCCGTCAAATATGCAGGCATCATATAA
CGCTCCGTGTTCTTGGCTGTCTCGAGGCACCCTTTTTTGTATACTTCGGT
TGCGATTGTCTACGTTCATACTAACTTCGTAGGGCGTTGAAAAATCGATT
TTCCATGACGACAATGCTGTTTTTCAAGACTCATGATACATGAGTGTCAT
AAAGTCCAGAAGTATGTTTGAAACGTCCATCACAAGGAGCCCATGTTTTC
ACGAATACTGACCGAGAAAATCGAGCGAAAAGTGCGACAATATGAACGTT
GACATATTGATATGACATGGGTAATGCGTGCAAACCATACAAAATACGTA
ATGTCGTACAGTATAAGCTACCACCAGCCTACCTATACGTTTTATTTGAT
ATAAACACGCATACAAACACTCTGACTGCAATCGTGACAGGTGTTTTTAG
TCGTGAGGAGCCCCCCTAAGCCTGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig439:16805..18630+

>mRNA_H-paniculata_contig439.11129.1 ID=mRNA_H-paniculata_contig439.11129.1|Name=mRNA_H-paniculata_contig439.11129.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig439:16805..18630+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGCCACGATTCGCTCATCTGCGAAGACGTCAATATGGCAGATGGGG
CCACGATTCGCTCATCTGCGAAGACGTCAATATGGCAGGAGGATACCTGG
AGGAATGCCCGGGAAGCGTAACAGTCGGTGCACGTCCCTTGTGCGTTGGC
TGTGCATCATATGCATTTGCACACTTGTTAGCCTCTGGGCGACCACGGAG
GATACCTGGAGGAATGCCCGGGAAGCGTAACAGTCGGTGCACGTCCCTTG
TGCGTTGGCTGTGCATCATATGCATTTGCACACTTGTTAGCCTCTGGGCG
ACCACGGTGTTTTTAGTCGTGAGGAGCCCCCCTAAGCCTGGTGTGTTTTT
AGTCGTGAGGAGCCCCCCTAAGCCTGGT
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