mRNA_H-paniculata_contig43898.11126.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43898.11126.1
Unique NamemRNA_H-paniculata_contig43898.11126.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig43898.11126.1 vs. uniprot
Match: A0A397B6D1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397B6D1_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.230e-11
Identity = 37/57 (64.91%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 IPINHTAAP--PPRPVPKVQALQACGGFVAMVGDGVNDAPALATADLGIAVGAGTQV 165
            IP++H  A   P   V KVQ LQA G  VAMVGDG+NDAPALA ADLGIA+GAGT +
Sbjct:  207 IPVHHVMAEVLPSNKVAKVQELQAAGRVVAMVGDGINDAPALAQADLGIAIGAGTDI 263
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BLAST of mRNA_H-paniculata_contig43898.11126.1 vs. uniprot
Match: A0A3R7AR58_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7AR58_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.330e-11
Identity = 37/57 (64.91%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 IPINHTAAP--PPRPVPKVQALQACGGFVAMVGDGVNDAPALATADLGIAVGAGTQV 165
            IP++H  A   P   V KVQ LQA G  VAMVGDG+NDAPALA ADLGIA+GAGT +
Sbjct:  396 IPVHHVMAEVLPSNKVAKVQELQAAGRVVAMVGDGINDAPALAQADLGIAIGAGTDI 452
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BLAST of mRNA_H-paniculata_contig43898.11126.1 vs. uniprot
Match: W4GTL5_9STRA (Copper-translocating P-type ATPase n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GTL5_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.340e-11
Identity = 37/57 (64.91%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 IPINHTAAP--PPRPVPKVQALQACGGFVAMVGDGVNDAPALATADLGIAVGAGTQV 165
            IP++H  A   P   V KVQ LQA G  VAMVGDG+NDAPALA ADLGIA+GAGT +
Sbjct:  842 IPVHHVMAEVLPSNKVAKVQELQAAGRVVAMVGDGINDAPALAQADLGIAIGAGTDI 898
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BLAST of mRNA_H-paniculata_contig43898.11126.1 vs. uniprot
Match: D8LTS5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTS5_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 2.510e-11
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:   46 KVQALQACGGFVAMVGDGVNDAPALATADLGIAVGAGTQV 165
            KVQ LQ  GG VAMVGDGVNDAPALATAD+GIAVGAGTQV
Sbjct: 1155 KVQELQLAGGHVAMVGDGVNDAPALATADVGIAVGAGTQV 1194
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BLAST of mRNA_H-paniculata_contig43898.11126.1 vs. uniprot
Match: A0A024UXT0_9STRA (Copper-translocating P-type ATPase n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UXT0_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 8.740e-11
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 IPINHTAAP--PPRPVPKVQALQACGGFVAMVGDGVNDAPALATADLGIAVGAGTQV 165
            IP++H  A   P   V KVQ LQA G  VAMVGDG+NDAPALA A+LGIA+GAGT +
Sbjct:  839 IPVHHVMAEVLPSNKVAKVQELQASGRVVAMVGDGINDAPALAQANLGIAIGAGTDI 895
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BLAST of mRNA_H-paniculata_contig43898.11126.1 vs. uniprot
Match: A0A1V9YS07_9STRA (Copper-transporting ATPase (Fragment) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YS07_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.630e-10
Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   28 PPRPVPKVQALQACGGFVAMVGDGVNDAPALATADLGIAVGAGTQV 165
            P   V KVQ+LQA G  VAMVGDG+NDAPALA ADLGIA+GAGT +
Sbjct:  390 PSNKVAKVQSLQALGRRVAMVGDGINDAPALAQADLGIAIGAGTDI 435
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BLAST of mRNA_H-paniculata_contig43898.11126.1 vs. uniprot
Match: A0A067BCN6_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BCN6_SAPPC)

HSP 1 Score: 60.8 bits (146), Expect = 7.070e-10
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 IPINHTAAPPPRPVPKVQALQACGGFVAMVGDGVNDAPALATADLGIAVGAGTQV 165
            +P N TA        KVQ LQA G  VAMVGDG+NDAPALA ADLG+A+GAGT +
Sbjct:    5 LPANKTA--------KVQELQAQGRIVAMVGDGINDAPALAQADLGVAIGAGTDI 51
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BLAST of mRNA_H-paniculata_contig43898.11126.1 vs. uniprot
Match: T0PRH4_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PRH4_SAPDV)

HSP 1 Score: 61.6 bits (148), Expect = 1.010e-9
Identity = 34/57 (59.65%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 IPINHTAAP--PPRPVPKVQALQACGGFVAMVGDGVNDAPALATADLGIAVGAGTQV 165
            +P +H  A   P     KVQ LQA G  VAMVGDG+NDAPALA ADLG+A+GAGT +
Sbjct:  202 LPSHHVMAEVLPANKTAKVQELQAQGRIVAMVGDGINDAPALAQADLGVAIGAGTDI 258
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BLAST of mRNA_H-paniculata_contig43898.11126.1 vs. uniprot
Match: A0A7W2FII1_9LACT (Copper-translocating P-type ATPase n=12 Tax=Aerococcus TaxID=1375 RepID=A0A7W2FII1_9LACT)

HSP 1 Score: 61.6 bits (148), Expect = 1.060e-9
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:   46 KVQALQACGGFVAMVGDGVNDAPALATADLGIAVGAGTQV 165
            K+++LQA GG VAMVGDGVNDAPALA ADLGIA+GAGT V
Sbjct:  567 KIKSLQADGGRVAMVGDGVNDAPALAQADLGIAIGAGTDV 606
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BLAST of mRNA_H-paniculata_contig43898.11126.1 vs. uniprot
Match: A0A838IRQ5_9DEIN (Copper-translocating P-type ATPase n=1 Tax=Trueperaceae bacterium TaxID=2026798 RepID=A0A838IRQ5_9DEIN)

HSP 1 Score: 61.6 bits (148), Expect = 1.060e-9
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 IPINHTAAPPPRPVPKVQALQACGGFVAMVGDGVNDAPALATADLGIAVGAGTQV 165
            I I     PP     +++ LQA G  VAMVGDGVNDAPALATAD+GIA+GAGT V
Sbjct:  565 IDIVFAQVPPEEKAARIEELQAQGKRVAMVGDGVNDAPALATADVGIAIGAGTDV 619
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43898.11126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A397B6D1_9STRA1.230e-1164.91Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A3R7AR58_9STRA1.330e-1164.91Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
W4GTL5_9STRA1.340e-1164.91Copper-translocating P-type ATPase n=9 Tax=Aphanom... [more]
D8LTS5_ECTSI2.510e-1187.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A024UXT0_9STRA8.740e-1163.16Copper-translocating P-type ATPase n=3 Tax=Aphanom... [more]
A0A1V9YS07_9STRA5.630e-1071.74Copper-transporting ATPase (Fragment) n=1 Tax=Achl... [more]
A0A067BCN6_SAPPC7.070e-1061.82Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
T0PRH4_SAPDV1.010e-959.65Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A7W2FII1_9LACT1.060e-980.00Copper-translocating P-type ATPase n=12 Tax=Aeroco... [more]
A0A838IRQ5_9DEIN1.060e-961.82Copper-translocating P-type ATPase n=1 Tax=Trueper... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43898contigH-paniculata_contig43898:244..408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue3.1e-09
Seed eggNOG ortholog2880.D8LTS5
KEGG rclassRC00002
KEGG koko:K17686
KEGG TC3.A.3.5
KEGG ReactionR00086
KEGG Pathwayko01524,ko04016,map01524,map04016
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.cation-transporting ATPase activity
EggNOG OGsCOG2217@1,KOG0207@2759
EC3.6.3.54
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930326.3513823-CDS-H-paniculata_contig43898:243..4081622930326.3513823-CDS-H-paniculata_contig43898:243..408Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43898 244..408 -
1691481242.7618074-CDS-H-paniculata_contig43898:243..4081691481242.7618074-CDS-H-paniculata_contig43898:243..408Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43898 244..408 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43898.11126.1prot_H-paniculata_contig43898.11126.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43898 244..408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43898.11126.1

>prot_H-paniculata_contig43898.11126.1 ID=prot_H-paniculata_contig43898.11126.1|Name=mRNA_H-paniculata_contig43898.11126.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
IPINHTAAPPPRPVPKVQALQACGGFVAMVGDGVNDAPALATADLGIAVG
AGTQV
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mRNA from alignment at H-paniculata_contig43898:244..408-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43898.11126.1 ID=mRNA_H-paniculata_contig43898.11126.1|Name=mRNA_H-paniculata_contig43898.11126.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at H-paniculata_contig43898:244..408- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCCAATCAACCATACCGCCGCCCCTCCCCCGCGCCCGGTGCCCAAGGT
GCAAGCTTTGCAGGCTTGTGGAGGATTTGTTGCTATGGTTGGAGACGGAG
TGAACGATGCACCTGCCCTCGCGACGGCAGATTTGGGGATAGCCGTTGGC
GCTGGGACCCAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig43898:244..408-

>mRNA_H-paniculata_contig43898.11126.1 ID=mRNA_H-paniculata_contig43898.11126.1|Name=mRNA_H-paniculata_contig43898.11126.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig43898:244..408- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCCAATCAACCATACCGCCGCCCCTCCCCCGCGCCCGGTGCCCAAGGT
GCAAGCTTTGCAGGCTTGTGGAGGATTTGTTGCTATGGTTGGAGACGGAG
TGAACGATGCACCTGCCCTCGCGACGGCAGATTTGGGGATAGCCGTTGGC
GCTGGGACCCAGGTAATCCCAATCAACCATACCGCCGCCCCTCCCCCGCG
CCCGGTGCCCAAGGTGCAAGCTTTGCAGGCTTGTGGAGGATTTGTTGCTA
TGGTTGGAGACGGAGTGAACGATGCACCTGCCCTCGCGACGGCAGATTTG
GGGATAGCCGTTGGCGCTGGGACCCAGGTA
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