mRNA_H-paniculata_contig43894.11125.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43894.11125.1
Unique NamemRNA_H-paniculata_contig43894.11125.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig43894.11125.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 4.820e-8
Identity = 34/69 (49.28%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:  121 IRGVHQELPVHCLCLRNQDNFKGFLXXXXXXXXXXHGRVNRVPGITTFSAFRVENHG-GQVLVIFKRYM 324
            +R  + E+PV C  LRN+ NFKG L           GRVNRVP ITT+ AFRVE  G G+V V  K++M
Sbjct:  292 LRASYTEVPVFCSTLRNEGNFKGLLI----------GRVNRVPNITTYRAFRVEKGGDGRVKVRVKKHM 350
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BLAST of mRNA_H-paniculata_contig43894.11125.1 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.260e-5
Identity = 31/69 (44.93%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:  121 IRGVHQELPVHCLCLRNQDNFKGFLXXXXXXXXXXHGRVNRVPGITTFSAFRVENHG-GQVLVIFKRYM 324
            ++  + E+PV C  L N+ NF G L           GRVNRVP ITT+ AFRVE  G G+V V  K +M
Sbjct:   89 LQASYTEVPVFCSTLGNEGNFNGLL----------QGRVNRVPDITTYRAFRVEKGGDGRVKVRVKHHM 147
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43894.11125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JUU1_9PHAE4.820e-849.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCW3_9PHAE1.260e-544.93Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43894contigH-paniculata_contig43894:312..1043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size343
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930326.2458925-CDS-H-paniculata_contig43894:311..3751622930326.2458925-CDS-H-paniculata_contig43894:311..375Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43894 312..375 +
1691481242.7412639-CDS-H-paniculata_contig43894:311..3751691481242.7412639-CDS-H-paniculata_contig43894:311..375Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43894 312..375 +
1622930326.273017-CDS-H-paniculata_contig43894:766..10411622930326.273017-CDS-H-paniculata_contig43894:766..1041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43894 767..1041 +
1691481242.7527385-CDS-H-paniculata_contig43894:766..10411691481242.7527385-CDS-H-paniculata_contig43894:766..1041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43894 767..1041 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43894.11125.1prot_H-paniculata_contig43894.11125.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43894 312..1041 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43894.11125.1

>prot_H-paniculata_contig43894.11125.1 ID=prot_H-paniculata_contig43894.11125.1|Name=mRNA_H-paniculata_contig43894.11125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
NCFIGYAGNWWRRMSSAKFLQGSPLASREKYLHEIAVIYCIRGVHQELPV
HCLCLRNQDNFKGFLRNQDNFKGFLHGRVNRVPGITTFSAFRVENHGGQV
LVIFKRYMTSSGV
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mRNA from alignment at H-paniculata_contig43894:312..1043+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43894.11125.1 ID=mRNA_H-paniculata_contig43894.11125.1|Name=mRNA_H-paniculata_contig43894.11125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=732bp|location=Sequence derived from alignment at H-paniculata_contig43894:312..1043+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACTGCTTCATCGGTTACGCGGGAAACTGGTGGCGGAGAATGTCATCGGC
CAAGTTTTTGCAAGGTAAGGAGAAACCACGATATACGGGCTGAAATGAAG
CAACGATCACGGGTGTAATCCAATTTGTAGAACTAAATGGGAAAGAGTGA
GGTGGACCGTCTCTGACTGCTCCGAATGATATCAACACGAATGAAGAGGG
CGCAAAACTGTATTCTATGTGCCCCCACATACTATACCTCAGACAAACAT
TTTTTTATCTTCCGTCTAAACCATTCCAAGCATTGATATTCGTCCAAGGA
GTCAAAGCTTTTTTCAGCTTTACACTCTTGACTTGACTATACGTTGATCT
CCACGTTCTGTGGGATTCTGCTGTTCAACGAGTTTTCGAATTGTATCCGT
TGTATTCTTCAAGTTGGCCGCTCATATTTCATAGTATGGCCGTCGTGACG
TGCAGGTTCGCCATTGGCGTCAAGAGAGAAATATCTCCACGAGATTGCAG
TAATTTATTGCATTCGAGGCGTCCACCAGGAACTTCCCGTCCACTGCCTC
TGCCTCCGAAATCAGGACAATTTCAAGGGCTTCCTCCGAAATCAGGACAA
TTTCAAGGGCTTCCTCCACGGTCGCGTAAACCGTGTGCCGGGTATCACAA
CCTTTAGTGCTTTCCGTGTAGAGAACCATGGTGGCCAGGTGCTGGTGATC
TTCAAGCGATACATGACAAGCAGTGGTGTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig43894:312..1043+

>mRNA_H-paniculata_contig43894.11125.1 ID=mRNA_H-paniculata_contig43894.11125.1|Name=mRNA_H-paniculata_contig43894.11125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig43894:312..1043+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACTGCTTCATCGGTTACGCGGGAAACTGGTGGCGGAGAATGTCATCGGC
CAAGTTTTTGCAAGAACTGCTTCATCGGTTACGCGGGAAACTGGTGGCGG
AGAATGTCATCGGCCAAGTTTTTGCAAGGTTCGCCATTGGCGTCAAGAGA
GAAATATCTCCACGAGATTGCAGTAATTTATTGCATTCGAGGCGTCCACC
AGGAACTTCCCGTCCACTGCCTCTGCCTCCGAAATCAGGACAATTTCAAG
GGCTTCCTCCGAAATCAGGACAATTTCAAGGGCTTCCTCCACGGTCGCGT
AAACCGTGTGCCGGGTATCACAACCTTTAGTGCTTTCCGTGTAGAGAACC
ATGGTGGCCAGGTGCTGGTGATCTTCAAGCGATACATGACAAGCAGTGGT
GTGGTTCGCCATTGGCGTCAAGAGAGAAATATCTCCACGAGATTGCAGTA
ATTTATTGCATTCGAGGCGTCCACCAGGAACTTCCCGTCCACTGCCTCTG
CCTCCGAAATCAGGACAATTTCAAGGGCTTCCTCCGAAATCAGGACAATT
TCAAGGGCTTCCTCCACGGTCGCGTAAACCGTGTGCCGGGTATCACAACC
TTTAGTGCTTTCCGTGTAGAGAACCATGGTGGCCAGGTGCTGGTGATCTT
CAAGCGATACATGACAAGCAGTGGTGTG
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