prot_H-paniculata_contig4388.11123.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4388.11123.1
Unique Nameprot_H-paniculata_contig4388.11123.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length1012
Homology
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BLAST of mRNA_H-paniculata_contig4388.11123.1 vs. uniprot
Match: D7G8B3_ECTSI (Importin N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8B3_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 3.970e-18
Identity = 56/91 (61.54%), Postives = 65/91 (71.43%), Query Frame = 0 
Query:   79 SPLSLVLAFLDRVIAPVCDDAGVSGIGDLLSAVLRCVYPRCLGKTTVKDLLCASLDKLERCSFSLLRDELVLVFIGFVNHPAYGATALLDV 169
            SPLSLVL+FL RV+ P   DA    IG L+SAVL+ V PR LG+ TV+ LL  + DKLERCS SLL DEL+ VF+ FVN  AYG TAL DV
Sbjct:  981 SPLSLVLSFLGRVMDPEAHDASALRIGGLVSAVLKSVPPRSLGRETVQSLLAVTFDKLERCSSSLLGDELLQVFVTFVNSEAYGPTALADV 1071
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BLAST of mRNA_H-paniculata_contig4388.11123.1 vs. uniprot
Match: A0A6H5L6E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E1_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.110e-18
Identity = 56/91 (61.54%), Postives = 65/91 (71.43%), Query Frame = 0 
Query:   79 SPLSLVLAFLDRVIAPVCDDAGVSGIGDLLSAVLRCVYPRCLGKTTVKDLLCASLDKLERCSFSLLRDELVLVFIGFVNHPAYGATALLDV 169
            SPLSLVL+FL RV+ P   DA    IG L+SAVL+ V PR LG+ TV+ LL  + DKLERCS SLL DEL+ VF+ FVN  AYG TAL DV
Sbjct:  907 SPLSLVLSFLARVMDPEAHDASALRIGGLVSAVLKSVPPRSLGRETVQSLLAVTFDKLERCSSSLLGDELLQVFVTFVNSEAYGPTALADV 997
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4388.11123.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8B3_ECTSI3.970e-1861.54Importin N-terminal domain-containing protein n=1 ... [more]
A0A6H5L6E1_9PHAE5.110e-1861.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1009..1011

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4388contigH-paniculata_contig4388:5787..12521 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4388.11123.1mRNA_H-paniculata_contig4388.11123.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4388 5629..12854 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4388.11123.1 ID=prot_H-paniculata_contig4388.11123.1|Name=mRNA_H-paniculata_contig4388.11123.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1012bp
MNGNGDNRRRACVESSSSFGSIPCGCGSRRGAGRSWLCCDAFCSSGDSDG
TCGGLVQKVAAAAGALSSQADVQSVCSMSPLSLVLAFLDRVIAPVCDDAG
VSGIGDLLSAVLRCVYPRCLGKTTVKDLLCASLDKLERCSFSLLRDELVL
VFIGFVNHPAYGATALLDVLDYRDCRLFARQQQSQLRSTQQSSNAIDGTG
DGSNANRGVRVRVFASRSGGIDDGGMGIKGGQKEGKAVAARAAAEARVMA
NGAGGYMGVGDDVDVEMATAGAGSPSAEGSCYTDGGTSRPTHRLHRQSCQ
EQQQQQGKKSAVSSLASPSPPCRTCCSVSFGGNTIAAAASPCSNRLPSGV
RDGGGLPFSSSPHSLFSSAAVATAAATPTTAMLGRPECGAGINRNSSSSN
NGVGGGCGDVAVASNVSDMVARRRPEESDRDNSGASLRTLVGRWLFFHEH
VQTIKLAKQSAQGLLRLLVAASEGDSRLSSLRMSTACMASGAGGRGGPLT
PFLQSMEEELVPVCLMSSIVRWARGAELSKQARSAVRPRKHSDGGDGSGN
LPFEFHSEREMSGVESVFGSHGDVADYDDGSGSSDDDDGDDSGGDDENSE
DGSEDSEALDRGNGCSGDDSGGGGGGPQRGVAMPLRQDLDPKGSFRAQER
CMQHMLVREDGMKTAQDGDLLNNVGLLKSDITSTTPTTTTANIRGSSSYN
GGSYLDSQLGATGKTLYNSNGTTTATTLSSATFQTGSYDGRARIGDGGVP
GGKGGGFLVPDPCTNVTRSQSSDNVTYRNALRRAQFQPKNQQQSHLPPTA
SFGTHHHYSSECQLRSVVATSAGVETFDGGFCGGGCGLLQASASSLSSPP
VIAAASHGGLINCIPTGVSNSGGDGAVAGNGGPPTASGSFDNSVGMNGGG
QAASGCLTHRPQQQQQQLQESSATAMQTGIDMCRCNEAQCGGGGGDGDGD
ELQTVQLSSLELNTSGGVAAGLLRFLRAATGEKEVRLSEWAREMPQEEQS
YLSALLRARNS*
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