mRNA_H-paniculata_contig43877.11121.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43877.11121.1
Unique NamemRNA_H-paniculata_contig43877.11121.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig43877.11121.1 vs. uniprot
Match: A0A6H5KEK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK0_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.450e-10
Identity = 33/67 (49.25%), Postives = 40/67 (59.70%), Query Frame = 2 
Query:    2 HVANNKQLKSMLLPCVEVCTGNAELYLEIAASCPVYYAMWNNARALTQLEVTSAIPPK-ARGRLCQV 199
            HVANN QLK ML+P  EVC   AELYL +A +CP+YY  W N      +E TS +P   +R    QV
Sbjct:   43 HVANNVQLKRMLVPGKEVCGPGAELYLRVAPTCPLYYTRWTNDVKQATVEFTSKVPQSGSRAEFSQV 109
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BLAST of mRNA_H-paniculata_contig43877.11121.1 vs. uniprot
Match: A0A6H5KBS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS8_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 4.330e-10
Identity = 30/56 (53.57%), Postives = 36/56 (64.29%), Query Frame = 2 
Query:    2 HVANNKQLKSMLLPCVEVCTGNAELYLEIAASCPVYYAMWNNARALTQLEVTSAIP 169
            HVANN QLK ML+P  EVC   AELYL +A +CP+YY  W N      +E TS +P
Sbjct:   43 HVANNVQLKRMLVPGKEVCGPGAELYLRVAPTCPLYYMRWTNDVKQATVEFTSKVP 98
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BLAST of mRNA_H-paniculata_contig43877.11121.1 vs. uniprot
Match: A0A6H5JUE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE7_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 7.860e-10
Identity = 29/56 (51.79%), Postives = 35/56 (62.50%), Query Frame = 2 
Query:    2 HVANNKQLKSMLLPCVEVCTGNAELYLEIAASCPVYYAMWNNARALTQLEVTSAIP 169
            HVANN QLK ML+P  E C   AELYL +A +CP+YY  W N      +E TS +P
Sbjct:   43 HVANNVQLKRMLVPGKEGCGPGAELYLRVAPTCPLYYMRWTNDVKQATVEFTSKVP 98
[Close]
BLAST of mRNA_H-paniculata_contig43877.11121.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.050e-9
Identity = 30/56 (53.57%), Postives = 36/56 (64.29%), Query Frame = 2 
Query:    2 HVANNKQLKSMLLPCVEVCTGNAELYLEIAASCPVYYAMWNNARALTQLEVTSAIP 169
            HVANN QLK ML+P  EVC   AELYL +A +CP+YY  W N      +E TS +P
Sbjct:  700 HVANNVQLKRMLVPGKEVCGPGAELYLRVAPTCPLYYMRWTNDVKQATVEFTSKVP 755
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43877.11121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KEK0_9PHAE1.450e-1049.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBS8_9PHAE4.330e-1053.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUE7_9PHAE7.860e-1051.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LBJ9_9PHAE1.050e-953.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43877contigH-paniculata_contig43877:50..381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size332
Cds size201
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43877.11121.1prot_H-paniculata_contig43877.11121.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43877 81..281 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930325.710904-UTR-H-paniculata_contig43877:49..801622930325.710904-UTR-H-paniculata_contig43877:49..80Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig43877 50..80 +
1691481242.5087957-UTR-H-paniculata_contig43877:49..801691481242.5087957-UTR-H-paniculata_contig43877:49..80Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig43877 50..80 +
1622930325.7570038-UTR-H-paniculata_contig43877:281..3811622930325.7570038-UTR-H-paniculata_contig43877:281..381Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig43877 282..381 +
1691481242.5248008-UTR-H-paniculata_contig43877:281..3811691481242.5248008-UTR-H-paniculata_contig43877:281..381Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig43877 282..381 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930325.7234194-CDS-H-paniculata_contig43877:80..2811622930325.7234194-CDS-H-paniculata_contig43877:80..281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43877 81..281 +
1691481242.5169497-CDS-H-paniculata_contig43877:80..2811691481242.5169497-CDS-H-paniculata_contig43877:80..281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43877 81..281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43877.11121.1

>prot_H-paniculata_contig43877.11121.1 ID=prot_H-paniculata_contig43877.11121.1|Name=mRNA_H-paniculata_contig43877.11121.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
MLLPCVEVCTGNAELYLEIAASCPVYYAMWNNARALTQLEVTSAIPPKAR
GRLCQVLWTARVTLTH*
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mRNA from alignment at H-paniculata_contig43877:50..381+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43877.11121.1 ID=mRNA_H-paniculata_contig43877.11121.1|Name=mRNA_H-paniculata_contig43877.11121.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=332bp|location=Sequence derived from alignment at H-paniculata_contig43877:50..381+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCATGTGGCAAATAACAAGCAGCTCAAGAGCATGCTACTCCCCTGCGTTG
AGGTTTGCACTGGGAACGCAGAGCTGTACCTGGAGATTGCTGCTTCTTGT
CCCGTATACTACGCCATGTGGAACAACGCACGTGCGTTGACGCAATTGGA
GGTGACATCAGCCATACCGCCGAAGGCTCGCGGGAGACTTTGTCAAGTGC
TTTGGACGGCGCGGGTGACACTAACCCACTGACGGTTAAAGTCTACCGCA
ACATCTGCGGCACTGGGCGTAGTTTGCGAGGCAGGGGCACAGCTGACACG
CAGAAAAAGCAGCAACAACAACAGCAGCTCTT
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Coding sequence (CDS) from alignment at H-paniculata_contig43877:50..381+

>mRNA_H-paniculata_contig43877.11121.1 ID=mRNA_H-paniculata_contig43877.11121.1|Name=mRNA_H-paniculata_contig43877.11121.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig43877:50..381+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTACTCCCCTGCGTTGAGGTTTGCACTGGGAACGCAGAGCTGTACCT
GGAGATTGCTGCTTCTTGTCCCGTATACTACGCCATGTGGAACAACGCAC
GTGCGTTGACGCAATTGGAGGTGACATCAGCCATACCGCCGAAGGCTCGC
GGGAGACTTTGTCAAGTGCTTTGGACGGCGCGGGTGACACTAACCCACTG
AATGCTACTCCCCTGCGTTGAGGTTTGCACTGGGAACGCAGAGCTGTACC
TGGAGATTGCTGCTTCTTGTCCCGTATACTACGCCATGTGGAACAACGCA
CGTGCGTTGACGCAATTGGAGGTGACATCAGCCATACCGCCGAAGGCTCG
CGGGAGACTTTGTCAAGTGCTTTGGACGGCGCGGGTGACACTAACCCACT
GA
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