mRNA_H-paniculata_contig43839.11113.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43839.11113.1
Unique NamemRNA_H-paniculata_contig43839.11113.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig43839.11113.1 vs. uniprot
Match: D8LQ49_ECTSI (HPP family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ49_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.720e-11
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   34 RRKAPIAPAVRYLLEVVCTDLVACGESFVPDERGGQTLVPYGSFVAIEVR 183
            RRKAPI PAVRYL+E +C DLVACGE FVP  R   TLV +  F+  EVR
Sbjct:  137 RRKAPITPAVRYLMEAMCVDLVACGECFVPHFRARHTLVRFCGFIPPEVR 186
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43839.11113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ49_ECTSI1.720e-1164.00HPP family protein n=1 Tax=Ectocarpus siliculosus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43839contigH-paniculata_contig43839:899..1081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size184
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930324.8736548-CDS-H-paniculata_contig43839:898..10811622930324.8736548-CDS-H-paniculata_contig43839:898..1081Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43839 899..1081 +
1691481242.1276069-CDS-H-paniculata_contig43839:898..10811691481242.1276069-CDS-H-paniculata_contig43839:898..1081Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43839 899..1081 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43839.11113.1prot_H-paniculata_contig43839.11113.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43839 899..1081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43839.11113.1

>prot_H-paniculata_contig43839.11113.1 ID=prot_H-paniculata_contig43839.11113.1|Name=mRNA_H-paniculata_contig43839.11113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
LAAVERPFGFSRRKAPIAPAVRYLLEVVCTDLVACGESFVPDERGGQTLV
PYGSFVAIEVR
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mRNA from alignment at H-paniculata_contig43839:899..1081+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43839.11113.1 ID=mRNA_H-paniculata_contig43839.11113.1|Name=mRNA_H-paniculata_contig43839.11113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at H-paniculata_contig43839:899..1081+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAGCCGCCGTCGAGCGGCCGTTCGGATTTTCTAGACGAAAGGCGCCTAT
TGCACCGGCCGTCCGCTACCTACTTGAGGTGGTGTGCACGGACCTCGTGG
CATGCGGAGAGTCCTTCGTCCCGGACGAGCGTGGGGGGCAGACCTTAGTA
CCGTACGGCAGCTTTGTTGCGATTGAGGTGAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig43839:899..1081+

>mRNA_H-paniculata_contig43839.11113.1 ID=mRNA_H-paniculata_contig43839.11113.1|Name=mRNA_H-paniculata_contig43839.11113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig43839:899..1081+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAGCCGCCGTCGAGCGGCCGTTCGGATTTTCTAGACGAAAGGCGCCTAT
TGCACCGGCCGTCCGCTACCTACTTGAGGTGGTGTGCACGGACCTCGTGG
CATGCGGAGAGTCCTTCGTCCCGGACGAGCGTGGGGGGCAGACCTTAGTA
CCGTACGGCAGCTTTGTTGCGATTGAGGTGAGACTAGCCGCCGTCGAGCG
GCCGTTCGGATTTTCTAGACGAAAGGCGCCTATTGCACCGGCCGTCCGCT
ACCTACTTGAGGTGGTGTGCACGGACCTCGTGGCATGCGGAGAGTCCTTC
GTCCCGGACGAGCGTGGGGGGCAGACCTTAGTACCGTACGGCAGCTTTGT
TGCGATTGAGGTGAGA
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