prot_H-paniculata_contig4380.11112.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4380.11112.1
Unique Nameprot_H-paniculata_contig4380.11112.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length260
Homology
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BLAST of mRNA_H-paniculata_contig4380.11112.1 vs. uniprot
Match: D7FUF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUF4_ECTSI)

HSP 1 Score: 340 bits (873), Expect = 1.860e-115
Identity = 170/257 (66.15%), Postives = 201/257 (78.21%), Query Frame = 0 
Query:    4 DKDFLNSDFPMYAAGGVGLFVLYRAYVSNTQMEPLQPACMSQGVFPAVFFTAVGALACHEMLLDMMSYPGGLTAWAPAVLAVIVASFAAYRGQRAASGGELGMGGVTAIVALTVASVWWLIGDVPEEP--LTKAQLKKAAKXXXXXXXKGIVA--GPKMLGLEKNNDIVTEYMHIVLGLVVAVALVLGLVNGPGVWPRNLQEGAFPACFMVVTGVLAYNSFLRQARAMDGGGLDDFLPAFTVMLVASIAANRAAAIQ 256
            + DFLNSDFPMYAAGGV LF++YRA+V+ ++ EPLQPACMS+GVFPA FFT VG+LACHEMLLDMM YPGGLTAWAPAVLAV+  S+ AYRGQ AASGGELG+  +  +VAL   ++ WL+ D  E+P  LTKAQLKKAAK        GI A  G KML LEK  D+VTE +H+ LG++V V LVL LVNGPGVWPRNLQ+GAFPACFM+ +GVLAYNSFLRQAR  DGG LDDF PAF   L A++ A + +A+Q
Sbjct:    6 ETDFLNSDFPMYAAGGVTLFIIYRAFVTKSRGEPLQPACMSKGVFPAAFFTFVGSLACHEMLLDMMGYPGGLTAWAPAVLAVVACSWVAYRGQLAASGGELGLSVIAPVVALAALTISWLVADEVEQPQNLTKAQLKKAAKDAAKKAAAGIGAAGGGKMLYLEKGKDVVTEQLHVALGVLVVVVLVLALVNGPGVWPRNLQQGAFPACFMIASGVLAYNSFLRQARESDGGSLDDFFPAFAAALAATLLARKGSAMQ 262
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4380.11112.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUF4_ECTSI1.860e-11566.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 191..201
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 42..65
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 66..70
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 104..124
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 93..103
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 255..259
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 171..190
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..30
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 31..41
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 71..92
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 125..170
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 235..254
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 202..220
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 221..234
NoneNo IPR availableTMHMMTMhelixcoord: 202..221
NoneNo IPR availableTMHMMTMhelixcoord: 167..189
NoneNo IPR availableTMHMMTMhelixcoord: 102..124
NoneNo IPR availableTMHMMTMhelixcoord: 44..66
NoneNo IPR availableTMHMMTMhelixcoord: 236..255
NoneNo IPR availableTMHMMTMhelixcoord: 12..31
NoneNo IPR availableTMHMMTMhelixcoord: 76..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4380contigH-paniculata_contig4380:2254..12406 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4380.11112.1mRNA_H-paniculata_contig4380.11112.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4380 1496..12467 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4380.11112.1 ID=prot_H-paniculata_contig4380.11112.1|Name=mRNA_H-paniculata_contig4380.11112.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=260bp
MSGDKDFLNSDFPMYAAGGVGLFVLYRAYVSNTQMEPLQPACMSQGVFPA
VFFTAVGALACHEMLLDMMSYPGGLTAWAPAVLAVIVASFAAYRGQRAAS
GGELGMGGVTAIVALTVASVWWLIGDVPEEPLTKAQLKKAAKEAAKRAAK
GIVAGPKMLGLEKNNDIVTEYMHIVLGLVVAVALVLGLVNGPGVWPRNLQ
EGAFPACFMVVTGVLAYNSFLRQARAMDGGGLDDFLPAFTVMLVASIAAN
RAAAIQKPT*
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