mRNA_H-paniculata_contig4380.11112.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4380.11112.1
Unique NamemRNA_H-paniculata_contig4380.11112.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4380.11112.1 vs. uniprot
Match: D7FUF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUF4_ECTSI)

HSP 1 Score: 342 bits (878), Expect = 4.310e-112
Identity = 170/257 (66.15%), Postives = 201/257 (78.21%), Query Frame = 2 
Query:   71 DKDFLNSDFPMYAAGGVGLFVLYRAYVSNTQMEPLQPACMSQGVFPAVFFTAVGALACHEMLLDMMSYPGGLTAWAPAVLAVIVASFAAYRGQRAASGGELGMGGVTAIVALTVASVWWLIGDVPEEP--LTKAQLKKAAKXXXXXXXKGIVA--GPKMLGLEKNNDIVTEYMHIVLGLVVAVALVLGLVNGPGVWPRNLQEGAFPACFMVVTGVLAYNSFLRQARAMDGGGLDDFLPAFTVMLVASIAANRAAAIQ 829
            + DFLNSDFPMYAAGGV LF++YRA+V+ ++ EPLQPACMS+GVFPA FFT VG+LACHEMLLDMM YPGGLTAWAPAVLAV+  S+ AYRGQ AASGGELG+  +  +VAL   ++ WL+ D  E+P  LTKAQLKKAAK        GI A  G KML LEK  D+VTE +H+ LG++V V LVL LVNGPGVWPRNLQ+GAFPACFM+ +GVLAYNSFLRQAR  DGG LDDF PAF   L A++ A + +A+Q
Sbjct:    6 ETDFLNSDFPMYAAGGVTLFIIYRAFVTKSRGEPLQPACMSKGVFPAAFFTFVGSLACHEMLLDMMGYPGGLTAWAPAVLAVVACSWVAYRGQLAASGGELGLSVIAPVVALAALTISWLVADEVEQPQNLTKAQLKKAAKDAAKKAAAGIGAAGGGKMLYLEKGKDVVTEQLHVALGVLVVVVLVLALVNGPGVWPRNLQQGAFPACFMIASGVLAYNSFLRQARESDGGSLDDFFPAFAAALAATLLARKGSAMQ 262
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4380.11112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUF4_ECTSI4.310e-11266.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4380contigH-paniculata_contig4380:1496..12467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_000410.1
Exons7
Model size1599
Cds size780
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930324.6462708-UTR-H-paniculata_contig4380:1495..22531622930324.6462708-UTR-H-paniculata_contig4380:1495..2253Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4380 1496..2253 -
1691481242.0230618-UTR-H-paniculata_contig4380:1495..22531691481242.0230618-UTR-H-paniculata_contig4380:1495..2253Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4380 1496..2253 -
1622930324.8200116-UTR-H-paniculata_contig4380:12406..124671622930324.8200116-UTR-H-paniculata_contig4380:12406..12467Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4380 12407..12467 -
1691481242.1175268-UTR-H-paniculata_contig4380:12406..124671691481242.1175268-UTR-H-paniculata_contig4380:12406..12467Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4380 12407..12467 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930324.666081-CDS-H-paniculata_contig4380:2253..24391622930324.666081-CDS-H-paniculata_contig4380:2253..2439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4380 2254..2439 -
1691481242.0386124-CDS-H-paniculata_contig4380:2253..24391691481242.0386124-CDS-H-paniculata_contig4380:2253..2439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4380 2254..2439 -
1622930324.6825316-CDS-H-paniculata_contig4380:3071..31501622930324.6825316-CDS-H-paniculata_contig4380:3071..3150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4380 3072..3150 -
1691481242.04648-CDS-H-paniculata_contig4380:3071..31501691481242.04648-CDS-H-paniculata_contig4380:3071..3150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4380 3072..3150 -
1622930324.7001703-CDS-H-paniculata_contig4380:4805..49181622930324.7001703-CDS-H-paniculata_contig4380:4805..4918Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4380 4806..4918 -
1691481242.0560355-CDS-H-paniculata_contig4380:4805..49181691481242.0560355-CDS-H-paniculata_contig4380:4805..4918Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4380 4806..4918 -
1622930324.7171342-CDS-H-paniculata_contig4380:6889..70031622930324.7171342-CDS-H-paniculata_contig4380:6889..7003Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4380 6890..7003 -
1691481242.0721521-CDS-H-paniculata_contig4380:6889..70031691481242.0721521-CDS-H-paniculata_contig4380:6889..7003Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4380 6890..7003 -
1622930324.7429156-CDS-H-paniculata_contig4380:7632..77291622930324.7429156-CDS-H-paniculata_contig4380:7632..7729Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4380 7633..7729 -
1691481242.0906281-CDS-H-paniculata_contig4380:7632..77291691481242.0906281-CDS-H-paniculata_contig4380:7632..7729Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4380 7633..7729 -
1622930324.7792084-CDS-H-paniculata_contig4380:9819..99201622930324.7792084-CDS-H-paniculata_contig4380:9819..9920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4380 9820..9920 -
1691481242.1005177-CDS-H-paniculata_contig4380:9819..99201691481242.1005177-CDS-H-paniculata_contig4380:9819..9920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4380 9820..9920 -
1622930324.8021343-CDS-H-paniculata_contig4380:12316..124061622930324.8021343-CDS-H-paniculata_contig4380:12316..12406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4380 12317..12406 -
1691481242.1089551-CDS-H-paniculata_contig4380:12316..124061691481242.1089551-CDS-H-paniculata_contig4380:12316..12406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4380 12317..12406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4380.11112.1prot_H-paniculata_contig4380.11112.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4380 2254..12406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4380.11112.1

>prot_H-paniculata_contig4380.11112.1 ID=prot_H-paniculata_contig4380.11112.1|Name=mRNA_H-paniculata_contig4380.11112.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=260bp
MSGDKDFLNSDFPMYAAGGVGLFVLYRAYVSNTQMEPLQPACMSQGVFPA
VFFTAVGALACHEMLLDMMSYPGGLTAWAPAVLAVIVASFAAYRGQRAAS
GGELGMGGVTAIVALTVASVWWLIGDVPEEPLTKAQLKKAAKEAAKRAAK
GIVAGPKMLGLEKNNDIVTEYMHIVLGLVVAVALVLGLVNGPGVWPRNLQ
EGAFPACFMVVTGVLAYNSFLRQARAMDGGGLDDFLPAFTVMLVASIAAN
RAAAIQKPT*
back to top

mRNA from alignment at H-paniculata_contig4380:1496..12467-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4380.11112.1 ID=mRNA_H-paniculata_contig4380.11112.1|Name=mRNA_H-paniculata_contig4380.11112.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10972bp|location=Sequence derived from alignment at H-paniculata_contig4380:1496..12467- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAAGCTCAGCAGCTCAGTAGACAGGATAGAGTGACCTGTCATACTGTA
CTGTATCAATCATGAGTGGAGATAAGGACTTCCTGAACTCGGACTTCCCT
ATGTATGCCGCAGGAGGCGTGGGATTGTTCGTTCTCTACCGCGCCTATGT
GGTAAGCAGAACGTGAAGCAATTGTCTCCTGATGCGCGCATGATATTCGA
CTTCCTCATTGTCCGACATCAAAACTGGAACCTTCACTGATGAGTTAGAC
AGCGATAGCAGTGAGTGCAGCTTGCGGAAGCAGTCGATAATGCTGACCCA
GCGCTTCAAGCTCCGTTACGAGAGGTGCCATCGGCGCCGACAAATGTATA
TATTTTGCTAACGGAAGGGTTGCAGTGCAGGATTTTGGGCAGGCGTGACC
CTCTTACAGCCTAACCGTTGCACTAGCACGACGTCACTGTCGGTTACATC
AGCTCAGTACCGTAACTATTAGTACCGTAACGATACATGTAACCGAAGAT
GAACCCACAGCTGTAAATGTATGTGAACCCTTTAACCCTTCACCTCGTCT
CTTTCTTGTGCTGCTGGTGATGTTGTCTCTCTCGGTGTACGTGGTGTTAT
CCACAAGTACGGCTACTTAGCAAAGGTCATCTTGTTACGGCGGGTCAACC
ACTGCCGGTCTGTTGACTCTTGTGAACTCTCGTCACACTACACTACGGTG
TGCGTCCACCCTACTTCGTGCTGTTGACAGGAACTTTTGAACCCAATCCA
AATGTAGTGTGGTGGAGCACTACACAGTCACGTTTACTTGATATGGTATA
CAAACTGGGAAAGCAGATGGGTAGAGCCTGATTCTACCCAGTTCATTTCA
ACGACGCTTTTTATTCAGACACCACGGACATACACGACAGTTATGTCGGG
CATTGTGCATTATAATTGTCGATCGAACTGCTGTCTATCGGTGGTCGTTG
ACTTGTCCTCACATCTCGTTTAGCTTCTCACGTAACATCAACACCAACAC
GGCCGTGTATCACATAAGAATGTACATATAATTGTACAGACACTATTATA
CTACCTTACCCGAATGTCTCACATCAACACCTGACATGCAACATATTGTA
CCAAACTTGGCCCCCCTGTCCAATAGTAGTGCATTATTCTGTCACACACG
GCGTGATCGCTGCAGCGCTACAAAGACAGTAAGTAGTACGGCAGCAAGAC
CTCCACTGTGCTTGCGTAATTTGCCAATCGTCCGCCTGCTGCGTAGGTTG
TGAGGGCAAGCGGTGCGAGGAAAGATATCCTGACCTTGCGCAAATGGTAC
ACATAACACAGATAGAGGTGTCTAGTATGGTTCAAGGCGTTTCCGCGCTG
GGTGGGCTGCGGTCGAAAGGAGCCATATGCGCCTGTTTAGTGCGGTAAGT
GCGGGAACCGCACTATAGTGAGTTGGACAGGTGACAAGCGACTTTGACCC
CGCCATATAGAGGACCGCACTGTATTTACTGTTGCATCTTTCGACCCCAC
GAACCCCATCTAATCCGCGACTGCTCCCCACCTCAAAACCAGGAAAAAAA
TTACGCCTATCTAATGACATGATTGAATTGCGACGATAAACGATAGGGAT
TTATCGCTGTTCATTTGTTCATATAAATAGGCAGTAATGTCACTGACACG
CAGACAGTGTACATCAGGCAAGCACTATTGGCATACTTTTATGTACAGTT
ACCGCCTTGACGATCGACATTTGTAGATTGTTCGGTGCCTTATTAAAATC
TGTACTCTGGAGGTCGAGTAGAAGGCTAAAAAGGTTGCTACAATAGTCGA
CAGCACTATCTGTAACGTGCCAAAAAACTGTTCCGGGATGATGCCGACGA
CGCTGTACATACTGGTGTACTGGTACGGGAATGTTGCGGTATACTAGTGT
CGTAGCAGATGCAGCCGCGGCTGACATCAAATTGCGTTGGCATAGGAGGA
ATCAAACCTTCAAGAATCAGACTTGGTAACGGCCAAAATATACAGTAGAT
ATCCTGACTACCACTCGTGAAAAATGAATACATCGGCATAATGCCTTAAG
GAGCTCTAGACGGCTGGTTAGTGTGTCTCAGGTGAATAAGGACGTCCGTT
TTTCCCTGTTTTGTAGTAATTTATCTTGGATAAAAAAAATGCGTTCCTAA
CTATTTATCGCAGTGCAGCAAACCCTAGTAACTAGGTTGTTCTACCTATA
TTGTCATACTCTAGTTTGCGATTTCCCACGTACAAGATAAGCAATTTACT
TCGCCAAGTTTGGAGATCAACTAGAGGGGACGGCTCTACAAACAGCCATG
TCCCTATGCCGTGCGCCATCGCCAAGATCATTTTTTTTTATTGTTGTAGA
GCAACACCAAAATGCCGCAGATCTATTACTCGCCTAATTATCCGCCTATT
TAGTGCGCTAGTTCGTGTGCATTAAATTGTAATTCTTGGGGATAATCATA
CTCTGATGTATTTGTCACACTTCATTTTCGATTTTCCGTTTCATCGTTCC
TATCCTCGGTCGGAAATGCGCCTTAAATTCCTGTTTTTCTTGGACAGAGC
AACACCCAAATGGAGCCTCTTCAGCCGGCATGCATGTCTCAGGGAGTGTT
TCCGGCAGTGTTCTTTACGGCTGTCGGTGCTCTCGCGTGCCACGAGATGT
GAGTGCCCCCTCGCGTAGCGCATATCACGTTGTACAACACCTTATTTATT
TTATAAGTGCGGGATGCACCCTGTGATTGGTACCTCTGGCGTACATCTGC
TGTAGAGGGGTGAATAGTATCGGGTGTTTACTGTAGGTCTGGATTGCTTG
TAGGAGCTTCAGTCCGCTGACCATGGGTCTGAGAAACTGGATTGGATTGT
TGGAGGCCAAAAAAAGGCAGCGACGTTTTTTTATTTGATTTTGATTGCGA
GGCAAGAATCTTAGTTATCGAAAGGGCACCGCACGTATATCTAATGACAT
TAGTATTTCTCAAGGTCTTTTCAACAACGCTCTGTTGGGTATAATAATCC
AGTACCGTCGTTGTTTCGAGACAATCGAGTGTGAGAACATGTGTGTCACG
GGGGGGGGAGGTGATATACAACGTGAAATACTCTGGAGTAAGGCAATAGA
CAGTAATGATTGGGTCATTTACCCATGCTGTCATACTGCATTTGCGATTT
CCCAAGTATTACCTTCCCTTAAGTATATATATATATATATATCATAGATA
TATCTACTATGCATAGTGCCTACAGCAGAAAATCTTCATTCTGTCCGAAA
ATATGGTGCACATTATTCGAATATTTCCTTGGATCAGTTACAATGTGGAA
ATCATAGATACAAGCCAGGTTAATATCATTAGCAAGGGAAGAGCATGTTG
CTTGGATAGATTAATCAAGATTACGTAAACAATATTGGGGCAATGTTGGT
GCTTTATTTTCGTGTTCCGGTCGCGATGGGATTTGTGTATCATGACGTAG
GGCCAAGCAAGGGCGAAGCCATCTGTAATGATCTATACAATAGTCTGACC
TCTGGCATGATCGCAGCGGGATCAGCGCTGGAGAAAAGTGCCCAGCATCA
TAGGTCATTCGGACAGCTATATTGCAGTAGAGTAGGAGCTCCAGTGAAGG
CATGGAATTGACATCGACTGAGTTATTGGGATCTTCGAGCCCATCCCCTA
TATAATTGGATGTTCATAAACCCAAATTCCTAAGCTAACATAAACCTATA
GGAACCTTTCGCGATTCTTTCGAATCCTCCATCATACAACGGTCAGTAAG
GCATTCAACCATTTTCTAAGTGTGAATATCTTGATCGAATAAGCTACTGC
AGCGGCCCAAAAGCCATGGTAATCCTGATCTTCATGGTTGGTACTTCCTC
TGTCTTGTAAGTATATACTCACTTGAACATGTCCGATTTCGTTATTTTTA
AACCATGAGATTCTACATGCTTTTCGTGTTGAAATCCATTTTTTTGGCGG
GGGAAGGTCAAATAGTTGACTTTTTAACATAAAAAAACGTACCGTGAGAA
AAGTGCTCGGCCGAAGATAGGCCCTTGTTAGTGACTTTTGATATTGTCCC
ACAAGCACAGTGATCGTGTTTAGAGACGCACTGAAATTATTTCTGTTTTC
CTTTATTTAATATATATATGTATATATATATATAATATTACATGTTTTGG
GCGGTAAAACCCAAATATTGAGTCAAATAGTTGATGGTTAACACCAAAAC
ATACGCCGTGAAAAAAAGCACTCGGCCGTAAAATGCCAGAAAAGTGCACG
TTTTTTCGCCCGAGTATTTTTTTTCACGGCGTATGTTTTGGTGTTAAAAA
GTCGAAACTGGTTGACCCCCCCCCAAAAACTCTTTTCCCCAATAAAACAT
GTTGAATTACATTAAAAGAATAAACAAACGAAGACATGGAAGTGCCTCTA
TGATCATAACTGAGTATTGAGTGTACCTGTGAGACAGAAGTAGTAGAATA
GTGCTAGAGTCACCTTACGGCTATGACCATGCAGTCATACTCCAGTGTTT
TGTCCTCGACCCACGCATGACTGTTTGCTGCGCCCCCGAAGAACGGCAGC
ACAATATCCGTGAATCAGATTTGTCTTTCGATCCAACTTTCCCCGGCTGC
AGAGTCGACGAAGTGATGCGAAGCAATTCATGAGCACCACCACATGAGCT
TCTTGGTTGAAACGAAAATATACGCCTGTGTACCACTTGTCTGTTTGTTG
ACCCATGATGTTGATGTTGACCCGCGATGTTGATGTAGGCTGCTGGACAT
GATGAGTTACCCTGGGGGATTGACGGCGTGGGCCCCGGCTGTGCTGGCTG
TAATAGTTGCTTCGTTTGCGGCCTACCGTGGGCAGGTAAGTTTTGCGTTG
CTGTAGCGAGCTAGATGTCTGTTGAATGTTTTTGTCGGCACTGTTATCTT
ACCTTGTTTATTCTGTGTGTTTTGTGTTATTTTGCCTTCTGTTACCCGAT
GTTTTACTATGACAAAACTCCTTTTCGTGTGTACCCATTTTTTGTTGTTT
CCTGACGAGCTCTGTCAGATGTTATATTCCGATATTGTCATGTGTTATAT
TCCGATATTGTCATGTGTTATATTCCGATATTGTCATGTGTTATATTCCG
ATATTGTCAGATGTTATATTCCGATATTGTCAGATGTTATATTCCGATAT
TGTCAGATGTTATATTCCGATATTGTCAGGTGTTATATTCCGGTATTGTC
AGGTGTTATATTCCGGTATTGTCAGGGTGTTATATTCCGATATTGTCAGG
TGTTATATTCCGGCATTGTAAGACAATTTTTTGTACACGGCCTTTGTTAT
TCTTTCGTTTTCGTGTTCTCCCTTGTCCTATGCTATCCTGTTGTATCTTG
TTGTATCCTGTTGTATCCTGTTTTTTTTGCGTGTCGTATTTACGGTACGT
TGGTGACTCCCTCCTGTCCTTGCCTTCTTTCTGTTCATGTTGGATCATTT
TGCTGGTTGATAAGCGAGCTGCTTCAGGTGGCGAACTCGGTATGGGGGGC
GTTACCGCCATCGTCGCTCTCACCGTAGCCAGCGTTTGGTGGCTTATCGG
GGACGTTCCGGAGGAGCCGCTCACTAAGGTATTTACCTGTTCTGATTTAA
GATTTTATGACTCGCTATGATGTTGAATTATTAGGGTATATAGAGTACCC
GATATAATGTTAAAAAAAAGAAAAGAAAGAGCGAAAATGGACAGCCTTGT
TTTGCATGTACTTGATTGAGAGATTGCTAAAAAGAAATGCTGCTAAAATG
GCGATGCTAAGAATAACAATATTTTGAAGAAGAAAATAATGACAATAATT
TAGAAACATGACTATATCCGTGCAGTCGTCCAGTTTTTGCCCGCGACCGA
CCCACAAGACAGGAATGGACGATGACTTCCTTGAACCCTCTCTTGCTGTG
TGTTCTCTCCGAGGGGACACACGTATCTCTCACTTGGGACACCACATCCA
ACCTCGTGTAAGCTCCCAACAAGGAAGGGGGGGAGGCAAGAAATCGACCG
TATTCCCTTGTTTAGATATACGTGTTACATAGTAGGTACTTCGCGCACGC
AGGAGCAGCTTCTCTTGTCGTTGCTCTGTAGCAGAGTCCTTGTTTGCAAG
GTGATACAAAAGAGCAGTTTAGACATGAGGGTCGATAGGTGCCTGTTCAG
GACGTACGTATCAAACTGGAATCGGGCTACGGTAGGGTGGGCGTTTGTTT
TGCGCCACTTTTTCACGGGGAACCGTTTCGAAAAGCGGCTCAAAACAAAC
TAAAAAAAAAAATACAACATATTCAACGGCAAGCGCTCACGTATCCGTAG
AGGTGCACAATGCACAATTCTGAACCACCGTAGTATTTAAGGGGGGAGAT
GATAGTGCTCGGAGCCACTCTCAAAGGTGGCTCAAAACGTGGAAAAAGCG
GCTCAGCAACATCCTTTCCCCCTACCGTAGGCCGACTCGCAGTAACGACA
TGTATTGGATCACCCCGTGTTTATAATACTTGAGGGGTCCCAGTCGTTTG
ATACTTTATCTTCTCCGTTTTTTTCGTTTTTCTTCCAGTATCTTTGTTCC
TCCGGGTAGCAGTAAGCCGGAAAGTCGGTCGTTGTACATGGAGCATGAGT
GCGGCACGCTTCGTGCATACCCTCTTATCTCTCTCTCTCTCTTCCTTCAC
ATGTCTTCTTGCCGCGGAGAGCGGCTCTTTTTATCATGTACGTGATTTCT
TTGTCTCTCAGCTCAAAATTCACCAGTTCAGGAGGTAGGCATCTACAGAC
GATTAGTCAAGCCACATTGTTGAGCAGTCAGGACACTGCGATACAGCATA
CTTCGCAGGCTACTCCAGCCTACCGCAGGTACACGCCCAAGAAGACGTGC
GTACTAGAACCCTCCTAGCGCACACATAGCATGTTCTGCGCCCTGTGACT
CACATTTACTCCGCTGTTTTCCATTTCTACAGCTACTGACAGCGGATCTT
GGAGATCCACATGAGCGAATATGAGCAATCTGGGCGGTCGAGGGACTGCG
CGGGGTAAAACTACATAGATAATAGGATGCTGTGAAAAGGCAGATAAGCC
GTTTAATCTCGAAAAAAAGCATAGGTGTTCTCGTTTGTTTGTTTTTTAAG
CTGCGTATAAACCGGGGTACCAGTGAAGAAAGCAGTATTCTAAAGTACGA
CGATAAATCTACAATACAATCCATGGGAACAACACGCCGGCGTTTTTTTT
CTTTTCGAAGTCCACGTGGCCATCGTGTTATTCCCCAAATACCGCATACC
GAATATCGTTTGGGCATAACATAATGGCCACTTGGACTTTGAAAAAAAAC
GCCGAGATATTATTCCCACGGAGTGTAGCTTTATCGTGGTGCTTCTAGAG
TACTGCTTTCCTCAATGGTACCCCGTTTTTATATGCGTTTTTAAGACGTG
AAATAAAAAACGAACAATAAAATACCGATAACACCCCTGAAAAACAGGTC
TCTGTGTGGCGGGGGCGGGGTTCTAAACTAGCCCCGTTGGTTCTCTTCTC
TCATGTCCTGTCGTCTCGTGATGTGTCATGTACTATTGGTGGTTGACAGG
CCCAACTTAAAAAGGCAGCCAAGGAAGCGGCGAAGCGAGCAGCCAAGGGT
ATCGTTGCCGGGCCGAAGATGCTCGGCCTCGAAAAGAACAATGACATCGT
TACCGAGTACATGTGAGCAATAGTTACGGTACAGTATAGTACAGTACAGT
TAGGAGCAGCGATGCTAGCCAACAGCGGCTGTTTTTCTTTCCCTCTCGAT
TATTTTCTTCTTGTCTGGTTTATAGGCAGGTACAAACAACTGAAACAAAC
TAATGATGGTGCTATGAAGCACGAGTTTTCCATGGCATACGTCACCAAAC
AGAAGGCGTCGGGAAATCAGATGGAAGGCGCCCGTAAGTCCAGAACAGTA
TACTATAGTATAGCATAGTACATCATGATAGCGCAGCCGAACTGACACCA
TTGTCCTCCAACGATTCACAATTTTTTTAATTTTCCCATTAGCCTTCAGC
CGACACCCTCCTCTCTTTGATAACTATCGCTTAGAACCACTAATCTATTT
ACCGTCCATACCGTCCTTATCTGCGGCAAACATTGGAACTACCAACCACC
CCTTCATCGCCCTTGACATCAAGTTACCACAGACACAGACGCTACATGCG
AGATAAAGCTGTATAAATGAAAAACGGTTTCGGAGATGAAAATTGTCGTT
ATTGATAGTCTTACCCTAGTCTGCTGTTGCTGCTAACATAATATAGGAGT
AATGCGTGTCGCCGGTCTAACTTACAGCTAGACGGATGGCCGTTTCATTC
GATGCTATGTTATCTAATCGTGTCAACACCAGGCTAAGGCTAAGGCTAAG
GCTGTTAATAGGGATTATATTTTAGCCCTATTGCTATCGTCTCGTATCAA
GCTGGCAGTGGGTACTCGAGCTTCCCAGCAAGCTGGTTATGGCGACTTGG
AAGGCTAAGCTAGCCTGTCGTTATTCAGTCCAACGCCCAGATCGTGATTT
TGTATACTAAGTGCCGTAGGGATACTGCCTTTTACCCGAGTCGCAAAGGA
ATATTGCGCGTTTAGGCCGGACCGCGGGGCCACTGCGTCACTGCGACGTT
GCCTCTTTTGGTTGGATTTGCCTTAATATTTCGATCATAAAGTCTCGGCC
AACTATTGGAGGAGCAAGAACATTAATTAATCTTACAGTGCTCTAGAGAT
GGAAAAGGGAGAAAGGACTTGAAACCAACCATGGTCCTACTACCGGCAGG
GACCTTGTTTGTTAGAAGTTTTGTCGGTGTGAAATTCTGTACCGAGAAAT
ACGAGTAAGTAACTTGGAAATAGTGTAGGTTGAAAGTATGACGGCGGCGA
CGACGACGACGACGACGACGATGAGGTGAAGGTCAGTGATCCCATCGCAC
ACAATCAGCACTCGATCACTAGTCCGCAGATTCGGTACAGAAATATACAC
CACCGTCACTGGAACAGATAACATCACACATGAACAACGGCGAACAGGGT
GGCGAAACAAAAGGTATGATGGCGTGACCATCCGCGAACCGGTCGGAAAA
GTAGAGAATCTCACACAGTCACCCGCGAACTTCTTGAATGAGTATTTATA
GTTGTGAACTTCTTGATGGTCTAGTTATGCCCTCCTAAATACACAGTAAT
TATTTGCCTTTGTCCGGGGTGTGGATTTTTTCACTCTGAAGACTGTGCCG
GTATCTTCTTGCCAGGTTTATAAGCCGCGTGCCACGATGTAACTGACGCC
TTGTTCCTATAGTCGTACTATATTGTACATTTTTTTTAGTACTTTTTTTT
GTCGTTGCTCTTGACAGGCACATCGTTCTGGGCTTAGTGGTGGCGGTGGC
GCTAGTGCTGGGATTGGTGAATGGACCTGGGGTCTGGCCTAGAAACGTGA
GAATCTTCTATTTGAATGATTGTGAAAATGGTGTTATGTCCTCTACGGAT
TCTAGTGCACTTTACACTGTACAGGTTAATTTTATACGCACATGAGTTTC
GATTAAAGGGTAGTTTCTCAGGGTAGTTTCTCAGATTAGGGAGGGATGTT
GGTGTTGACTGCAGAAATAGTGACCTGTTGTTATTTATAGAGAGCGACAC
GCATGGTGATGATACCTTATATCTAGGGCCTGCTTGCAGAAAGACGTTGT
CGTGCTATTTTTTTTTCCTTTTAATCCATGCATCGCTGCCTTTTAAGGTA
CGGCAGTCGCAGAAATGGCTCATTTGACGAGTCTATTGTCTTGTGAGTTA
CTGTATTGTCTTGTGTGAGTTACTGTATTGTCTTGTGTGAGTTACTGTAT
TGTCTTGTGTGAGTTACTGTATTGTCTTGTGTGAGTTACTGTATTGTCTT
GTGTAAACATCAAGTTACGAACGCCAGAATCCAACACCTATTAGAAATGG
CTTGACCACTAAATACCGCACGCCTGCGTAGCGATGGTGTGCAGCACTCA
TACCACATCACCCCTTCCCTTTGACGTACGTGACATGCTGGTTCCACACG
TATAATCGCGCGCCTACTACTGCTGCAGCTCCAAGAGGGTGCTTTCCCGG
CGTGCTTCATGGTGGTGACCGGAGTGTTGGCGTACAACTCGTTCCTTCGC
CAGGCGCGTGCCATGGACGGCGGGGGGTTGGACGATTTCCTGCCTGCGTT
TACCGTCATGCTTGTGGCCTCAATCGCCGCCAATCGCGCGGCCGCGATTC
AGAAACCTACTTGATAGATGGAGTTCGGCAAGATCGTTGCTGGCGTTTTC
TGTGCATTGTGTGCATAATTTACAGGGTGGTACAGGTTTTATAGTATGTT
GGATATCTCATCACCCAGGTCGATTGCGTTTTTTTTAGTGCATTCGACAT
TCTCTCTAGACGCGAGGGAGAGCCTGTTGTGACTGTCGAAAGAGCAAGAG
CTCGTTTTATCTAACAACAGTTACGTTTCGATCAGAGTTTTCCATTGGCG
TATATTTATTTCGGTGTCACGAGGTGTGAGGCAAGAGGTTGCGCCGTATT
TTTGGAGAAAAGTCACTGCTGCAGTAGAATTTGGGAAGGTGGTGTCACTG
GCGGTAATCTCAATTGCCCTCTAAAGTTCGGTACAAAGGCATGCATGTAT
GTGGTGACGCGAGAAACGAGTTTGGATCACCTTGTCGAGCGGTTCATAAT
TGATTTATGCTTGGTTGCGTGACGATTCGATATAGATCAAGGTAGGTCTT
GGTCGGTGTGGAGAAGAAAATCGCGACTTCCGTCTGGTCTTTCATCGTCG
AACAACCCACTCCTATATATGTAGACGTACTTCGGTATGGAAGCATCGGA
TAGAGGTTTTTGCCTTAGCCTTTCGGGAGTTAAAAAACCCCAAACAACTC
CCCACTCCTATAAACGGTATACTTCAACCTTCAACTTCAAAAATAGTAAA
TTTATCAGCAGTTTGTAAAAGAACAGTACCAATATTTTTCTCTTTAAACT
ACTGCATAGAACAAAAATCATA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4380:1496..12467-

>mRNA_H-paniculata_contig4380.11112.1 ID=mRNA_H-paniculata_contig4380.11112.1|Name=mRNA_H-paniculata_contig4380.11112.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1560bp|location=Sequence derived from alignment at H-paniculata_contig4380:1496..12467- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTGGAGATAAGGACTTCCTGAACTCGGACTTCCCTATGTATGCCGC
AGGAGGCGTGGGATTGTTCGTTCTCTACCGCGCCTATGTGATGAGTGGAG
ATAAGGACTTCCTGAACTCGGACTTCCCTATGTATGCCGCAGGAGGCGTG
GGATTGTTCGTTCTCTACCGCGCCTATGTGAGCAACACCCAAATGGAGCC
TCTTCAGCCGGCATGCATGTCTCAGGGAGTGTTTCCGGCAGTGTTCTTTA
CGGCTGTCGGTGCTCTCGCGTGCCACGAGATAGCAACACCCAAATGGAGC
CTCTTCAGCCGGCATGCATGTCTCAGGGAGTGTTTCCGGCAGTGTTCTTT
ACGGCTGTCGGTGCTCTCGCGTGCCACGAGATGCTGCTGGACATGATGAG
TTACCCTGGGGGATTGACGGCGTGGGCCCCGGCTGTGCTGGCTGTAATAG
TTGCTTCGTTTGCGGCCTACCGTGGGCAGGCTGCTGGACATGATGAGTTA
CCCTGGGGGATTGACGGCGTGGGCCCCGGCTGTGCTGGCTGTAATAGTTG
CTTCGTTTGCGGCCTACCGTGGGCAGCGAGCTGCTTCAGGTGGCGAACTC
GGTATGGGGGGCGTTACCGCCATCGTCGCTCTCACCGTAGCCAGCGTTTG
GTGGCTTATCGGGGACGTTCCGGAGGAGCCGCTCACTAAGCGAGCTGCTT
CAGGTGGCGAACTCGGTATGGGGGGCGTTACCGCCATCGTCGCTCTCACC
GTAGCCAGCGTTTGGTGGCTTATCGGGGACGTTCCGGAGGAGCCGCTCAC
TAAGGCCCAACTTAAAAAGGCAGCCAAGGAAGCGGCGAAGCGAGCAGCCA
AGGGTATCGTTGCCGGGCCGAAGATGCTCGGCCTCGAAAAGAACAATGAC
ATCGTTACCGAGTACATGCCCAACTTAAAAAGGCAGCCAAGGAAGCGGCG
AAGCGAGCAGCCAAGGGTATCGTTGCCGGGCCGAAGATGCTCGGCCTCGA
AAAGAACAATGACATCGTTACCGAGTACATGCACATCGTTCTGGGCTTAG
TGGTGGCGGTGGCGCTAGTGCTGGGATTGGTGAATGGACCTGGGGTCTGG
CCTAGAAACGCACATCGTTCTGGGCTTAGTGGTGGCGGTGGCGCTAGTGC
TGGGATTGGTGAATGGACCTGGGGTCTGGCCTAGAAACCTCCAAGAGGGT
GCTTTCCCGGCGTGCTTCATGGTGGTGACCGGAGTGTTGGCGTACAACTC
GTTCCTTCGCCAGGCGCGTGCCATGGACGGCGGGGGGTTGGACGATTTCC
TGCCTGCGTTTACCGTCATGCTTGTGGCCTCAATCGCCGCCAATCGCGCG
GCCGCGATTCAGAAACCTACTTGACTCCAAGAGGGTGCTTTCCCGGCGTG
CTTCATGGTGGTGACCGGAGTGTTGGCGTACAACTCGTTCCTTCGCCAGG
CGCGTGCCATGGACGGCGGGGGGTTGGACGATTTCCTGCCTGCGTTTACC
GTCATGCTTGTGGCCTCAATCGCCGCCAATCGCGCGGCCGCGATTCAGAA
ACCTACTTGA
back to top