mRNA_H-paniculata_contig4376.11108.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4376.11108.1
Unique NamemRNA_H-paniculata_contig4376.11108.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4376.11108.1 vs. uniprot
Match: A0A835Z323_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z323_9STRA)

HSP 1 Score: 119 bits (298), Expect = 8.770e-30
Identity = 52/74 (70.27%), Postives = 65/74 (87.84%), Query Frame = 1
Query:   10 LRFIGGLVPV-LPNYFKSEWSYAQIRGIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERVSYARFLRG 228
            L F+GG++P+ +P YF SEWSYAQ+RG+E+RS+CAFG EP TIV++S DGSFL ARF EPGECERVSYA+F+RG
Sbjct:  293 LSFLGGILPMAVPKYFSSEWSYAQVRGVESRSICAFGAEPNTIVVVSADGSFLLARFDEPGECERVSYAKFIRG 366          
BLAST of mRNA_H-paniculata_contig4376.11108.1 vs. uniprot
Match: D8LQB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB5_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 7.340e-29
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 1
Query:   85 GIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERVSYARFLRGAGAGSDDE 252
            GIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECER+SYARFLRGAGAGSDDE
Sbjct:   29 GIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERISYARFLRGAGAGSDDE 84          
BLAST of mRNA_H-paniculata_contig4376.11108.1 vs. uniprot
Match: A0A7S2CPD6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CPD6_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.660e-25
Identity = 46/85 (54.12%), Postives = 69/85 (81.18%), Query Frame = 1
Query:   16 FIGGLVPVLPNYFKSEWSYAQIRGIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERVSYARFLRGAGAGSDDEDAVGMG 270
            F+  L+P +P Y +SEWS+AQ+RG+E+ ++CAFG++PRT++++S DGS+L + F+EPGECERVSYARF+R A    ++E+A  MG
Sbjct:  301 FVRRLLPGIPKYVESEWSFAQVRGLESTTICAFGQDPRTLIVVSADGSYLLSSFAEPGECERVSYARFIRSA----EEEEADDMG 381          
BLAST of mRNA_H-paniculata_contig4376.11108.1 vs. uniprot
Match: A0A7S2SQE7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQE7_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 8.010e-22
Identity = 41/78 (52.56%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   31 VPVLPNYFKSEWSYAQIRGIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERVSYARFLRGAGAGSDDEDAVG 264
            +P +P Y  SEWS+AQ+R +E R++CAFG +P TI+++  DGS+L + F+EPGECE++SYARF+RG     DDE  +G
Sbjct:  336 IPGVPKYVDSEWSFAQVRHVEGRTICAFGSKPNTIIVVGMDGSYLLSSFAEPGECEKISYARFIRGPR--EDDESGMG 411          
BLAST of mRNA_H-paniculata_contig4376.11108.1 vs. uniprot
Match: A0A7S3HCS3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HCS3_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 8.640e-22
Identity = 43/86 (50.00%), Postives = 64/86 (74.42%), Query Frame = 1
Query:   10 LRFIGGLVP--VLPNYFKSEWSYAQIRGIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERVSYARFLRGAGAGSDDEDAV 261
            + F+ G++P  ++P YF+SEWS+AQ+RGIE RS+CAFG++P  IV++S DG+F+ + F E G+C R+S A+FLR       +EDAV
Sbjct:  337 INFLKGILPGSLVPKYFESEWSFAQVRGIEGRSICAFGKDPSRIVVVSADGTFIVSSFDEGGDCARISTAKFLRNREEMIPEEDAV 422          
BLAST of mRNA_H-paniculata_contig4376.11108.1 vs. uniprot
Match: A0A7S2CSM6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CSM6_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.400e-21
Identity = 37/66 (56.06%), Postives = 57/66 (86.36%), Query Frame = 1
Query:   28 LVPVLPNYFKSEWSYAQIRGIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERVSYARFLR 225
            ++P +P Y +SEWS+AQIRG+E+RS+CAFG+EP T++++S +GS+L + F++PGECER+  ARF+R
Sbjct:  304 VIPGIPKYVESEWSFAQIRGLESRSICAFGQEPNTLIVVSANGSYLMSSFAQPGECERIHMARFMR 369          
BLAST of mRNA_H-paniculata_contig4376.11108.1 vs. uniprot
Match: A0A7S3XN66_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XN66_HETAK)

HSP 1 Score: 85.5 bits (210), Expect = 3.050e-18
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = 1
Query:   19 IGGLVPVLPNYFKSEWSYAQIRGIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERVSYARFL 222
            +G ++P   NYF SEWS+AQ+RGI+  SVCAFG +P T+ +IS DGSF    F + GE E++ YA F+
Sbjct:  144 VGSMIPGASNYFSSEWSFAQVRGIDPNSVCAFGSQPNTLAIISADGSFRMVNFEKGGESEQIYYANFI 211          
BLAST of mRNA_H-paniculata_contig4376.11108.1 vs. uniprot
Match: I2CQ51_NANGC (Uncharacterized protein (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQ51_NANGC)

HSP 1 Score: 82.4 bits (202), Expect = 4.080e-18
Identity = 41/86 (47.67%), Postives = 57/86 (66.28%), Query Frame = 1
Query:    1 THRLRFIGGLVP-VLPNYFKSEWSYAQIRGIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERVSYARFLRGAGAGSDDED 255
            T  L F+  L+P V P YF SEWS+AQ+RG+EAR+V AFG    T++ +  DG++L + F+  GE ERVSY + +R A    +DED
Sbjct:   18 TSGLSFMRSLLPQVTPRYFASEWSFAQVRGLEARTVVAFGVRDHTLICVGADGTYLVSNFASGGEAERVSYKKLVRSAE--EEDED 101          
BLAST of mRNA_H-paniculata_contig4376.11108.1 vs. uniprot
Match: A0A397A0A0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A0A0_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 7.490e-17
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   16 FIGGLVPVLPNYFKSEWSYAQIRGIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERVSYARFLRGAGAGSDDED 255
            F+ GL   LP YF SEWS+AQ +  E R++CAFG +  TI+++  DGSF  A F   GECER SY++F++     +DDED
Sbjct:  117 FMRGL---LPKYFSSEWSFAQFKVPETRTICAFGMDKNTILVVGADGSFYKAVFDANGECERTSYSKFIQ-----ADDED 188          
BLAST of mRNA_H-paniculata_contig4376.11108.1 vs. uniprot
Match: A0A8J2SBH4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SBH4_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 9.320e-17
Identity = 35/74 (47.30%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   10 LRFIGGLVP--VLPNYFKSEWSYAQIRGIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERVSYARFLR 225
            L F+  +VP  +   Y +SEWS+AQ+RG+ A ++CAFG+ P T+V +  DG+FL +RF++ GECERV++ RF++
Sbjct:  292 LAFLRKVVPGGLAAAYLESEWSFAQVRGVHAPTICAFGKTPNTVVSVGADGAFLVSRFADGGECERVAFHRFIK 365          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4376.11108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z323_9STRA8.770e-3070.27WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
D8LQB5_ECTSI7.340e-2998.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CPD6_9STRA1.660e-2554.12Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2SQE7_9STRA8.010e-2252.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3HCS3_9STRA8.640e-2250.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2CSM6_9STRA1.400e-2156.06Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3XN66_HETAK3.050e-1851.47Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
I2CQ51_NANGC4.080e-1847.67Uncharacterized protein (Fragment) n=2 Tax=Nannoch... [more]
A0A397A0A0_9STRA7.490e-1748.75Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A8J2SBH4_9STRA9.320e-1747.30Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4376contigH-paniculata_contig4376:12876..13157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue2.1e-13
Seed eggNOG ortholog157072.XP_008870153.1
Preferred nameWDR45B
KEGG koko:K08876
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0000407,GO:0000422,GO:0001101,GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006497,GO:0006807,GO:0006914,GO:0006950,GO:0006952,GO:0006970,GO:0006979,GO:0006996,GO:0007005,GO:0007033,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009058,GO:0009059,GO:0009414,GO:0009415,GO:0009605,GO:0009607,GO:0009620,GO:0009628,GO:0009651,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0009991,GO:0010035,GO:0010150,GO:0010506,GO:0010508,GO:0016020,GO:0016043,GO:0016236,GO:0019222,GO:0019538,GO:0019898,GO:0022411,GO:0022607,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031667,GO:0032266,GO:0032501,GO:0032502,GO:0033036,GO:0034045,GO:0034497,GO:0034613,GO:0034645,GO:0035091,GO:0036211,GO:0042157,GO:0042158,GO:0042221,GO:0042594,GO:0043167,GO:0043168,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0044804,GO:0048366,GO:0048367,GO:0048518,GO:0048522,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051179,GO:0051641,GO:0051704,GO:0051707,GO:0061726,GO:0061919,GO:0065007,GO:0070727,GO:0070925,GO:0071704,GO:0071840,GO:0080025,GO:0090693,GO:0098542,GO:0098805,GO:0099402,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1901981,GO:1902936,GO:1903008,GO:1905037
EggNOG free text desc.phosphatidylinositol-3,5-bisphosphate binding
EggNOG OGsKOG2111@1,KOG2111@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_005420.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001,ko03016
Exons1
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930324.1239583-CDS-H-paniculata_contig4376:12875..131571622930324.1239583-CDS-H-paniculata_contig4376:12875..13157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4376 12876..13157 -
1691481241.8095438-CDS-H-paniculata_contig4376:12875..131571691481241.8095438-CDS-H-paniculata_contig4376:12875..13157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4376 12876..13157 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4376.11108.1prot_H-paniculata_contig4376.11108.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4376 12876..13157 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4376.11108.1

>prot_H-paniculata_contig4376.11108.1 ID=prot_H-paniculata_contig4376.11108.1|Name=mRNA_H-paniculata_contig4376.11108.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
THRLRFIGGLVPVLPNYFKSEWSYAQIRGIEARSVCAFGREPRTIVLISE
DGSFLTARFSEPGECERVSYARFLRGAGAGSDDEDAVGMGGGGV
back to top

mRNA from alignment at H-paniculata_contig4376:12876..13157-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4376.11108.1 ID=mRNA_H-paniculata_contig4376.11108.1|Name=mRNA_H-paniculata_contig4376.11108.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=282bp|location=Sequence derived from alignment at H-paniculata_contig4376:12876..13157- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACACACAGGCTGAGATTCATCGGCGGGCTCGTCCCAGTTCTCCCCAACTA CTTCAAGTCCGAGTGGAGCTATGCCCAGATTCGAGGCATCGAGGCCCGCT CTGTCTGTGCCTTCGGCCGAGAGCCCCGTACCATCGTCCTCATCAGCGAA GACGGCTCCTTTCTCACAGCCCGATTCTCGGAGCCCGGCGAATGCGAGCG GGTCAGCTACGCGCGCTTCCTGCGCGGCGCAGGCGCCGGCAGCGACGACG AGGACGCTGTGGGTATGGGGGGGGGGGGGGTA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4376:12876..13157-

>mRNA_H-paniculata_contig4376.11108.1 ID=mRNA_H-paniculata_contig4376.11108.1|Name=mRNA_H-paniculata_contig4376.11108.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at H-paniculata_contig4376:12876..13157- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACACACAGGCTGAGATTCATCGGCGGGCTCGTCCCAGTTCTCCCCAACTA
CTTCAAGTCCGAGTGGAGCTATGCCCAGATTCGAGGCATCGAGGCCCGCT
CTGTCTGTGCCTTCGGCCGAGAGCCCCGTACCATCGTCCTCATCAGCGAA
GACGGCTCCTTTCTCACAGCCCGATTCTCGGAGCCCGGCGAATGCGAGCG
GGTCAGCTACGCGCGCTTCCTGCGCGGCGCAGGCGCCGGCAGCGACGACG
AGGACGCTGTGGGTATGGGGGGGGGGGGGGTAACACACAGGCTGAGATTC
ATCGGCGGGCTCGTCCCAGTTCTCCCCAACTACTTCAAGTCCGAGTGGAG
CTATGCCCAGATTCGAGGCATCGAGGCCCGCTCTGTCTGTGCCTTCGGCC
GAGAGCCCCGTACCATCGTCCTCATCAGCGAAGACGGCTCCTTTCTCACA
GCCCGATTCTCGGAGCCCGGCGAATGCGAGCGGGTCAGCTACGCGCGCTT
CCTGCGCGGCGCAGGCGCCGGCAGCGACGACGAGGACGCTGTGGGTATGG
GGGGGGGGGGGGTA
back to top