prot_H-paniculata_contig4376.11106.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4376.11106.1
Unique Nameprot_H-paniculata_contig4376.11106.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length57
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4376.11106.1 vs. uniprot
Match: A0A6H5L5F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5F6_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.020e-22
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 0 
Query:    1 MSVNFFMRGHPGSLPFLLLGIVVIVPGAFSSFQLIAAFRRWPGYDFEDMHARGDFV 56
            +S NFF   HPGS+ FL+LGIVVI+PGA SSFQL AAFRRWPGYDF+DM   GDFV
Sbjct:   67 VSANFFAMKHPGSVAFLVLGIVVIIPGAHSSFQLFAAFRRWPGYDFDDMRGSGDFV 122
[Close]
BLAST of mRNA_H-paniculata_contig4376.11106.1 vs. uniprot
Match: A0A7S2V4Y8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4Y8_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 9.620e-12
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 0 
Query:    2 SVNFFMRGHPGSLPFLLLGIVVIVPGAFSSFQLIAAFRRWPGYDFEDM 49
            S++F   GH GS+PF +LG++VI+PG +S+ QL+ A RRWPGY    M
Sbjct:  110 SIDFVATGHKGSMPFFILGLIVIIPGLYSTVQLVGAIRRWPGYSLNYM 157
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4376.11106.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5F6_9PHAE1.020e-2273.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2V4Y8_9STRA9.620e-1252.08Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..15
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 39..56
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 16..38
NoneNo IPR availableTMHMMTMhelixcoord: 15..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4376contigH-paniculata_contig4376:3168..5615 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4376.11106.1mRNA_H-paniculata_contig4376.11106.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4376 3155..6352 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4376.11106.1 ID=prot_H-paniculata_contig4376.11106.1|Name=mRNA_H-paniculata_contig4376.11106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
MSVNFFMRGHPGSLPFLLLGIVVIVPGAFSSFQLIAAFRRWPGYDFEDMH
ARGDFV*
back to top