mRNA_H-paniculata_contig4376.11106.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4376.11106.1
Unique NamemRNA_H-paniculata_contig4376.11106.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4376.11106.1 vs. uniprot
Match: A0A6H5L5F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5F6_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 7.320e-22
Identity = 45/60 (75.00%), Postives = 50/60 (83.33%), Query Frame = 2 
Query:    2 ILLCMSVNFFMRGHPGSLPFLLLGIVVIVPGAFSSFQLIAAFRRWPGYDFEDMHARGDFV 181
            ILLC+S NFF   HPGS+ FL+LGIVVI+PGA SSFQL AAFRRWPGYDF+DM   GDFV
Sbjct:   63 ILLCVSANFFAMKHPGSVAFLVLGIVVIIPGAHSSFQLFAAFRRWPGYDFDDMRGSGDFV 122
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BLAST of mRNA_H-paniculata_contig4376.11106.1 vs. uniprot
Match: A0A7S2V4Y8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4Y8_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.330e-9
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 2 
Query:    2 ILLCMSVNFFMRGHPGSLPFLLLGIVVIVPGAFSSFQLIAAFRRWPGYDFEDM 160
            IL+  S++F   GH GS+PF +LG++VI+PG +S+ QL+ A RRWPGY    M
Sbjct:  105 ILIITSIDFVATGHKGSMPFFILGLIVIIPGLYSTVQLVGAIRRWPGYSLNYM 157
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4376.11106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5F6_9PHAE7.320e-2275.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2V4Y8_9STRA1.330e-950.94Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4376contigH-paniculata_contig4376:3155..6352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionProtein of unknown function DUF872, transmembrane
Ec32 orthologEc-00_006650.1
Exons2
Model size921
Cds size171
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4376.11106.1prot_H-paniculata_contig4376.11106.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4376 3168..5615 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930323.9991531-UTR-H-paniculata_contig4376:3154..31671622930323.9991531-UTR-H-paniculata_contig4376:3154..3167Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4376 3155..3167 +
1691481241.758845-UTR-H-paniculata_contig4376:3154..31671691481241.758845-UTR-H-paniculata_contig4376:3154..3167Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4376 3155..3167 +
1622930324.0633528-UTR-H-paniculata_contig4376:5615..63521622930324.0633528-UTR-H-paniculata_contig4376:5615..6352Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4376 5616..6352 +
1691481241.7994657-UTR-H-paniculata_contig4376:5615..63521691481241.7994657-UTR-H-paniculata_contig4376:5615..6352Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4376 5616..6352 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930324.0169082-CDS-H-paniculata_contig4376:3167..32341622930324.0169082-CDS-H-paniculata_contig4376:3167..3234Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4376 3168..3234 +
1691481241.7724457-CDS-H-paniculata_contig4376:3167..32341691481241.7724457-CDS-H-paniculata_contig4376:3167..3234Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4376 3168..3234 +
1622930324.0393362-CDS-H-paniculata_contig4376:5511..56151622930324.0393362-CDS-H-paniculata_contig4376:5511..5615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4376 5512..5615 +
1691481241.7872896-CDS-H-paniculata_contig4376:5511..56151691481241.7872896-CDS-H-paniculata_contig4376:5511..5615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4376 5512..5615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4376.11106.1

>prot_H-paniculata_contig4376.11106.1 ID=prot_H-paniculata_contig4376.11106.1|Name=mRNA_H-paniculata_contig4376.11106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
MSVNFFMRGHPGSLPFLLLGIVVIVPGAFSSFQLIAAFRRWPGYDFEDMH
ARGDFV*
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mRNA from alignment at H-paniculata_contig4376:3155..6352+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4376.11106.1 ID=mRNA_H-paniculata_contig4376.11106.1|Name=mRNA_H-paniculata_contig4376.11106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3198bp|location=Sequence derived from alignment at H-paniculata_contig4376:3155..6352+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTTTGCTGTGTATGTCGGTCAATTTCTTCATGAGGGGGCACCCCGGGT
CTTTGCCGTTCTTGCTCCTAGGCATCGTCGGTGAGGACAAGAAACAAGGA
TAAAAAAAAAAAATAAAAATAAAAAGTCATTATAATTTATGATAATAATC
GCTCCGCACGGGGAGCAGTACCGGCAGTCGTTGTTGTTCGTCAGTATGCG
ACAAGAGTGATATCTATCCTCCCTCCCCCTTCCAAACGTTTCTATCACCC
TTTGGACGAATAGCGATCATCACCATTGATACTTGAGAGCATTCGGTCGC
ATTAAAAAGACAGAAGAGTTTTTTCGTGAAGGTTTATTCTATGCGTGTTT
CGCCTGGACCATCTACAACAATACGAGTCCGCCGACTAGTAGGTGTTCGT
GAATCGAATACATGAAGGGCGGGGGGTCTCGAGTCAAAAACTATTTAATC
GAAGTATGTGCTCGAGCATTCTGAAACTTGAGGCAACATTTATAAGGCTC
TATGTTATTTATTTATATATATATATATATATATATATATAATTTCAATT
TTCATTGCGTATGCTTCCTACAAGTATTCGTTTTGTCAGGGGGGGGGGGA
GATGAAGGGTTTTTACGACCGGCATTAACTACACATGGGTTTTTATTTAT
TTATTTTTTTCTCGGTGTCATCTTCCATTCCCGAAGCAGGAACTGGTTCG
CGAAGATTATTTTCTTGTTCCATGTTTTCGTTTTTGTTGTGCTGTATAGG
TCGGTTCACACCAGCGTCATTATCTCATATAGCACCTTGACAAAATTGCT
ACCCCCCCCCCCCCCCCAGGACAATTACGAATACTTGCAAATGGTTTTAA
CAAAAAAACTAAAAGTATTCGCCTGAGTTTCAGAATGAGTTCGTGCATTA
CATGTGCCCTGGATATCCACGACTGCTAATAATACTCGTGACTCGAATGG
ACAGGGGTGGGTACTTTATTTTATGTGTCCGCTCATTCTGAAACTCAGGC
GAAAAATTTCAGTTTTTTTGTGATAATCATTTGCAAATATTCGTATTTAT
CCGGAGAGAGCAAAATTGTCGTCCTACAAGACTAAACTGAACACACGGGG
AGGGATCCACGGACCTACGCCCGAACGGGTAGGGTAGCTCGTGAACTGAG
CATGATTGGAAGCCTAGTCAGAGGTCTTTTAGTGGGTGCAACCCCCACAC
TGCATACCTGGTTCAACCGAACCGAAGTGGCGCCTACCCCGCAGAGGAAC
AAATAACTCTGAAGTCTGTAAAAGGAAATGTAGAAATACTCAAGTATGGA
AGCATCGGTAACGGTTTTTGCCTCAGCCTTCCGGGGGTTAAAAAAAAAGA
AAATGGGCAGGGAACGATGTATTTTTATCCCCGAGGGGAGAAATTTGTAA
GTTATTTGCGCATAACAATGTTCTGGTGAGATTAAGAATGAATTCTGAGA
TTGAAAACAGTTTTTCTCCTCGATATTTAGAGCAAAGATCCGGCGGCGAG
AAAGATATATGTTTTGTGCATTTGTACTTGTTGTGAATATTCCAATCCCC
GGACGAATACGAATACAAGACACGAATAAATACGAGAAGTCTGGAATGAA
TACTGTATCTATTTGATTTAGGCGAAGATGTCCATGTGACACGAATAATG
TGCGTTGTACTCAATATATAATATGGAGCATCAACAATCTCGGGCAGATG
AGAGAGAGTATTCAATCTGTACAGTACCATCCCGAAAGATAAACAGGACC
TGCATGTGTGACTGTTCGCCGGGTATACGACCACTTGGTGACCATCTGTA
AAGTGACCATTCATAGGCTTGTAAACGAATAAAATACGTGTTTACCCCAA
GACAAATAATGATAGTTTGAGATAGTTGCGACAGCCATTTTCGTATTTGT
CTTGTTTTTTGTTTTTTTTAACCCCTGGAAGGCTGAGGCAAAAACCGTTA
CCGATGCTTCCATACTTGAGTATTTCTACATTTCCTTTAACAGAGTTCAG
AGTTATTTATTCCTCTGCGGGGTAGGCGCCACCCCGTTTCGGCTGAACCA
AGTAGGCAGTGTGGGGGTTGCACCCACTAAAAGACCTCTGACTAGACTTC
CGGTTATGCTCAGTTCACGAGCTGGCCTACCCGTTCGGGCGTAGGTCCGT
GTTGTCCAGGGGGTGTACATGTTTTAGTGGTATTAACTATATTTGTTGTA
GCCTCCCCCCTTTTCGCGTCGCGCCGCCGTACTGCCAGGCTCCTTTATTG
TTCTTTTCACAGGGTCAGATGCCGTCTTGCATTCGTTGAACTGACACCAC
GCTTTTATTTTTTTCTTGTTTTTTTTTGCTCGCCCCTTTTTACTTTGTCG
AGGACAGTAATAGTACCCGGAGCGTTCAGCAGTTTCCAGCTAATTGCGGC
CTTCCGCCGATGGCCTGGATATGACTTCGAAGACATGCATGCCCGTGGTG
ATTTCGTATGAAAATGCCCACAGAGAGGGGGGGTGTACCGTGGAAATGAT
CAAATTGCCTCAGTCGCGATAACACCCAGTATGGGATTAGGCCTTTAGCC
GCAGTGTTGTGTTGCTCGTTTTTTTTTTTTTGTTGCTCTGGGGTATTTTG
CGATTTTTCTCGTTTTTTATGTAATTGGTGTAGAGCTGACCTCAGCGTCT
GATTCTTGGTAAATCTTGGGACATGTCCTTTTTCTTTTTTTTTTTCATGT
AAGACGCCGTTGCCCATGGGTTAGTTTTCGTTTTTTGCTTCAGCTGTACC
TCTCTCACTGTACATGTACATCTCTTCCTCTCTCTCGACATTTCTCCTAT
TTACCTATCTAGCTATCTATCTAGCCATCCATCCATCTATATCTATCCAT
CTCCGTTTATGGTGAGAGGAGAGGTGCGTGTTACGAGTCGCGTGATGGTA
GCAGGAAAGAGTGAATCCGTGTAGTGCAACCCATCAGTGTTGGCAATATG
TAGATGTAGGCGTAGTTCATGCTCCTGTAGACCCGGCTTCGGTTCACTCC
ACCGCTGTTTTTTGCTCCCGGCTTGGACGGGAAAAGGTGTGTGGCACAGA
AAATGCAGGCTTCGGGCGGAGGGGAGGACGAAGCTAGTTTTTAGTCCCCA
CGCCGTGTAGATTATTGTGTTTCTAAGCAATTTTTTTAGTTTTTTTTTTA
GTGTTTTTATTTCGCGCTTTTAGTGTTTTTCTGTCAACACATTTGCCT
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Coding sequence (CDS) from alignment at H-paniculata_contig4376:3155..6352+

>mRNA_H-paniculata_contig4376.11106.1 ID=mRNA_H-paniculata_contig4376.11106.1|Name=mRNA_H-paniculata_contig4376.11106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig4376:3155..6352+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGTCAATTTCTTCATGAGGGGGCACCCCGGGTCTTTGCCGTTCTT
GCTCCTAGGCATCGTCGATGTCGGTCAATTTCTTCATGAGGGGGCACCCC
GGGTCTTTGCCGTTCTTGCTCCTAGGCATCGTCGTAATAGTACCCGGAGC
GTTCAGCAGTTTCCAGCTAATTGCGGCCTTCCGCCGATGGCCTGGATATG
ACTTCGAAGACATGCATGCCCGTGGTGATTTCGTATGATAATAGTACCCG
GAGCGTTCAGCAGTTTCCAGCTAATTGCGGCCTTCCGCCGATGGCCTGGA
TATGACTTCGAAGACATGCATGCCCGTGGTGATTTCGTATGA
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