mRNA_H-paniculata_contig43739.11102.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43739.11102.1
Unique NamemRNA_H-paniculata_contig43739.11102.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig43739.11102.1 vs. uniprot
Match: A0A2K3KMU5_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KMU5_TRIPR)

HSP 1 Score: 52.0 bits (123), Expect = 3.730e-6
Identity = 31/92 (33.70%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:    1 WIIDSGCTGHHLTPQRNLFQIFRQVVCSPIATASKGELDVEGQGDVEGLIWTAEGAMRIIVCDVFYVPEASDSILSVERMVSQGMEAYLVRN 276
            W ++SGC+ +H+TP R     F     S I      +L VEG G++  +I + +G  ++I+ DVF+VPE S ++LS+ ++V +G    +  N
Sbjct:   15 WYLNSGCS-NHMTPYREWLTSFDASKKSSIKLVDGRKLVVEGIGNI--VIKSKKGG-KVIISDVFFVPEMSCNLLSLGQLVQKGFSVNMEDN 102
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BLAST of mRNA_H-paniculata_contig43739.11102.1 vs. uniprot
Match: A0A438GVH9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GVH9_VITVI)

HSP 1 Score: 50.4 bits (119), Expect = 4.780e-5
Identity = 31/88 (35.23%), Postives = 50/88 (56.82%), Query Frame = 1 
Query:    1 WIIDSGCTGHHLTPQRNLFQIFRQVVCSPIATASKGELDVEGQGDVEGLIWTAEGAMRIIVCDVFYVPEASDSILSVERMVSQGMEAY 264
            W+IDSGCT +H+TP+ + F+   Q   S +   +   +DV+G+G V   + T      I+  DV +VPE S S+LSV +M+ +    +
Sbjct:  291 WLIDSGCT-NHMTPELSYFKELDQSYKSKVKIGNGDLVDVKGKGVVS--VETPTCIKYIL--DVLFVPEISQSLLSVGQMLEKNYSLH 373
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43739.11102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2K3KMU5_TRIPR3.730e-633.70Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GVH9_VITVI4.780e-535.23Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43739contigH-paniculata_contig43739:841..1128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930323.3761163-CDS-H-paniculata_contig43739:840..11281622930323.3761163-CDS-H-paniculata_contig43739:840..1128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43739 841..1128 -
1691481241.48696-CDS-H-paniculata_contig43739:840..11281691481241.48696-CDS-H-paniculata_contig43739:840..1128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43739 841..1128 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43739.11102.1prot_H-paniculata_contig43739.11102.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43739 841..1128 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43739.11102.1

>prot_H-paniculata_contig43739.11102.1 ID=prot_H-paniculata_contig43739.11102.1|Name=mRNA_H-paniculata_contig43739.11102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
WIIDSGCTGHHLTPQRNLFQIFRQVVCSPIATASKGELDVEGQGDVEGLI
WTAEGAMRIIVCDVFYVPEASDSILSVERMVSQGMEAYLVRNGDNC
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mRNA from alignment at H-paniculata_contig43739:841..1128-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43739.11102.1 ID=mRNA_H-paniculata_contig43739.11102.1|Name=mRNA_H-paniculata_contig43739.11102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=288bp|location=Sequence derived from alignment at H-paniculata_contig43739:841..1128- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGATAATTGATTCGGGCTGCACCGGGCATCACCTGACCCCCCAACGCAA
CCTCTTCCAAATTTTTCGCCAGGTCGTATGTAGTCCCATTGCCACTGCGA
GCAAGGGGGAATTGGATGTAGAGGGGCAAGGAGACGTGGAAGGTTTAATA
TGGACTGCGGAAGGAGCCATGCGCATCATCGTCTGCGATGTATTTTATGT
ACCTGAAGCATCAGATAGTATTTTATCGGTGGAGCGGATGGTGAGCCAAG
GGATGGAGGCGTATTTGGTTCGGAACGGAGACAATTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig43739:841..1128-

>mRNA_H-paniculata_contig43739.11102.1 ID=mRNA_H-paniculata_contig43739.11102.1|Name=mRNA_H-paniculata_contig43739.11102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig43739:841..1128- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGATAATTGATTCGGGCTGCACCGGGCATCACCTGACCCCCCAACGCAA
CCTCTTCCAAATTTTTCGCCAGGTCGTATGTAGTCCCATTGCCACTGCGA
GCAAGGGGGAATTGGATGTAGAGGGGCAAGGAGACGTGGAAGGTTTAATA
TGGACTGCGGAAGGAGCCATGCGCATCATCGTCTGCGATGTATTTTATGT
ACCTGAAGCATCAGATAGTATTTTATCGGTGGAGCGGATGGTGAGCCAAG
GGATGGAGGCGTATTTGGTTCGGAACGGAGACAATTGTTGGATAATTGAT
TCGGGCTGCACCGGGCATCACCTGACCCCCCAACGCAACCTCTTCCAAAT
TTTTCGCCAGGTCGTATGTAGTCCCATTGCCACTGCGAGCAAGGGGGAAT
TGGATGTAGAGGGGCAAGGAGACGTGGAAGGTTTAATATGGACTGCGGAA
GGAGCCATGCGCATCATCGTCTGCGATGTATTTTATGTACCTGAAGCATC
AGATAGTATTTTATCGGTGGAGCGGATGGTGAGCCAAGGGATGGAGGCGT
ATTTGGTTCGGAACGGAGACAATTGT
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