mRNA_H-paniculata_contig1173.1110.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1173.1110.1
Unique NamemRNA_H-paniculata_contig1173.1110.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1173.1110.1 vs. uniprot
Match: A0A8D1EEP9_PIG (Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1EEP9_PIG)

HSP 1 Score: 132 bits (331), Expect = 4.610e-35
Identity = 67/132 (50.76%), Postives = 84/132 (63.64%), Query Frame = 1
Query:    1 VWDVASGQCVHTLRGHNDEILDVSFNATGSKLVTASADGTSRVFNTVNGACQAILIGHEGEISKVLNRVVVPRLLASTCFNPQGTRILTASSDKIARLWDADTGDCLQILEGHTDEIFSCAFNYEGDTIITG 396
            +WD  + +CV TL  H+DEILD  F+ TG  + TASAD    V++  +  C+  +IGH+                    FNPQG R+LT S+DK AR+WDA TG CLQ+LEGHTDEIFSCAFNY+GD IITG
Sbjct:  171 LWDATNEKCVATLTCHDDEILDSCFDYTGKLIATASAD----VYSPTHRLCRDPVIGHD------------------ISFNPQGNRLLTGSADKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGDIIITG 280          
BLAST of mRNA_H-paniculata_contig1173.1110.1 vs. uniprot
Match: A0A2G9RJ73_LITCT (Uncharacterized protein (Fragment) n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9RJ73_LITCT)

HSP 1 Score: 98.6 bits (244), Expect = 4.900e-23
Identity = 51/83 (61.45%), Postives = 58/83 (69.88%), Query Frame = 1
Query:  163 LIGHEGEISKVLNR----VVVPRLLASTC---FNPQGTRILTASSDKIARLWDADTGDCLQILEGHTDEIFSCAFNYEGDTII 390
            LIGH GEIS         ++    +  TC   FN QG+RILTASSDK A LWD  TG C+Q+LEGHTDEIFSCAFNYEG+TII
Sbjct:  124 LIGHRGEISSAQFNWDCSLIATASMDKTCRICFNAQGSRILTASSDKTACLWDPQTGQCVQVLEGHTDEIFSCAFNYEGNTII 206          
BLAST of mRNA_H-paniculata_contig1173.1110.1 vs. uniprot
Match: A0A643C2B2_BALPH (Uncharacterized protein (Fragment) n=1 Tax=Balaenoptera physalus TaxID=9770 RepID=A0A643C2B2_BALPH)

HSP 1 Score: 97.1 bits (240), Expect = 1.270e-22
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 1
Query:  238 FNPQGTRILTASSDKIARLWDADTGDCLQILEGHTDEIFSCAFNYEGDTIITG 396
            FNPQG R+LT SSDK AR+WD  TG CLQ+LEGHTDEIFSCAFNY+GD IITG
Sbjct:   80 FNPQGNRLLTGSSDKTARIWDVQTGQCLQVLEGHTDEIFSCAFNYKGDIIITG 132          
BLAST of mRNA_H-paniculata_contig1173.1110.1 vs. uniprot
Match: A0A3R7BAZ2_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BAZ2_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 4.690e-22
Identity = 50/152 (32.89%), Postives = 83/152 (54.61%), Query Frame = 1
Query:    1 VWDVASGQC--------VHTLR----------GHNDEILDVSFNATGSKLVTASADGTSRVFNTVNGACQAILIGHEGEISK-VLNRVVVPRLLASTCFNPQGTRILTASSDKIARLWDADTGDCLQILEGHTDEIFSCAFNYEGDTIITGA 399
            VWD  +G C        +H  R          GH  E++ V FNA+GS++ + S D T+ V++   G  +  L GH  E++    +       +A+  F+ QG R+++A +D  +R+W A TG+CLQ+L GH D++F+  F Y+G T++T +
Sbjct:  162 VWDTTTGMCKQVLTGRIIHRRRHQVGFLKSVLGHEGEVVSVGFNASGSRVGSCSMDCTATVWDVETGKAEFDLTGHAAEVACFAFDGSKSSSFMATVAFSRQGGRLVSAGADHTSRVWHAQTGECLQVLRGHEDQVFAAHFAYDGATVVTAS 313          
BLAST of mRNA_H-paniculata_contig1173.1110.1 vs. uniprot
Match: A0A5N4E733_CAMDR (Dynein assembly factor with WDR repeat domains 1 n=1 Tax=Camelus dromedarius TaxID=9838 RepID=A0A5N4E733_CAMDR)

HSP 1 Score: 99.8 bits (247), Expect = 5.820e-22
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 1
Query:  238 FNPQGTRILTASSDKIARLWDADTGDCLQILEGHTDEIFSCAFNYEGDTIITGAL 402
            FNPQG+R+LT SSDK AR+WDA TG CLQ+LEGHTDEIFSCAFNY+GD IITG +
Sbjct:  376 FNPQGSRLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGDIIITGTI 430          
BLAST of mRNA_H-paniculata_contig1173.1110.1 vs. uniprot
Match: A0A8C8D1H4_ONCTS (Uncharacterized protein n=1 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=A0A8C8D1H4_ONCTS)

HSP 1 Score: 97.1 bits (240), Expect = 8.430e-22
Identity = 65/151 (43.05%), Postives = 79/151 (52.32%), Query Frame = 1
Query:    1 VWDVASGQCVHTLRGHNDEILDVSFNATGSKLVTASADGTSRV--------------------FNTVNGACQAI-LIGHEGEISKVLNRVVVPRLLASTCFNPQG-TRILTASSDKIARLWDADTGDCLQILEGHTDEIFSCAFNYEGDTI 387
            +WDV SG+ VHTL GH  EI  V F+   S L+T S D +SRV                      + +G    I L GHEGEI                    QG +R+L+AS+D +ARLWD  +G  LQ+ EGHTDEIFS AFNYEGDTI
Sbjct:  140 LWDVPSGRRVHTLIGHRGEISSVQFDWDCSLLITGSMDKSSRVTXXXXXXXXXXXXXXXXXXXXXSADGRTTEIQLEGHEGEI--------------------QGESRVLSASADMMARLWDVQSGVYLQVPEGHTDEIFSSAFNYEGDTI 270          
BLAST of mRNA_H-paniculata_contig1173.1110.1 vs. uniprot
Match: A0A8D1K9R8_PIG (Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1K9R8_PIG)

HSP 1 Score: 97.4 bits (241), Expect = 3.740e-21
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 1
Query:  238 FNPQGTRILTASSDKIARLWDADTGDCLQILEGHTDEIFSCAFNYEGDTIITG 396
            FNPQG R+LT S+DK AR+WDA TG CLQ+LEGHTDEIFSCAFNY+GD IITG
Sbjct:  351 FNPQGNRLLTGSADKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGDIIITG 403          
BLAST of mRNA_H-paniculata_contig1173.1110.1 vs. uniprot
Match: A0A2P4TGK6_BAMTH (Uncharacterized protein n=1 Tax=Bambusicola thoracicus TaxID=9083 RepID=A0A2P4TGK6_BAMTH)

HSP 1 Score: 88.6 bits (218), Expect = 6.150e-19
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 1
Query:  250 GTRILTASSDKIARLWDADTGDCLQILEGHTDEIFSCAFNYEGDTIITGALTL 408
            G RILTASSDK ARLWDA TG CLQ LEGHTDEIFSCAFNY+G+ IITG+ ++
Sbjct:  153 GNRILTASSDKTARLWDAATGHCLQTLEGHTDEIFSCAFNYKGNIIITGSWSI 205          
BLAST of mRNA_H-paniculata_contig1173.1110.1 vs. uniprot
Match: A0A674C646_SALTR (Uncharacterized protein n=1 Tax=Salmo trutta TaxID=8032 RepID=A0A674C646_SALTR)

HSP 1 Score: 87.8 bits (216), Expect = 9.230e-19
Identity = 53/128 (41.41%), Postives = 72/128 (56.25%), Query Frame = 1
Query:    4 WDVASGQCVHTLRGHNDEILDVSFNATGSKLVTASADGTSRVFNTVNGACQAILIGHEGEISKVLNRVVVPRLLASTCFNPQGTRILTASSDKIARLWDADTGDCLQILEGHTDEIFSCAFNYEGDTI 387
            WDV +G+ V    GH+ EI+ +SFN  G +LVT S D T  +++  +G  Q        + S+V                     IL++ +D++ARLWD  +G  LQ+LEGHTDEIFS AFNYEGDTI
Sbjct:  112 WDVQTGEEV----GHSAEIISLSFNTVGDQLVTGSFDHTVSLWDVPSGRSQ-----RGDQHSRV---------------------ILSSRADRMARLWDVQSGVYLQVLEGHTDEIFSYAFNYEGDTI 209          
BLAST of mRNA_H-paniculata_contig1173.1110.1 vs. uniprot
Match: A0A8C9KXN0_SERCA (Dynein assembly factor with WD repeats 1 n=15 Tax=Passeriformes TaxID=9126 RepID=A0A8C9KXN0_SERCA)

HSP 1 Score: 88.2 bits (217), Expect = 6.640e-18
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 1
Query:  259 ILTASSDKIARLWDADTGDCLQILEGHTDEIFSCAFNYEGDTIITGA 399
            ILTASSDK ARLWDA TG CLQILEGH DEIFSCAFNY+GDTIITG+
Sbjct:  341 ILTASSDKTARLWDAATGHCLQILEGHADEIFSCAFNYKGDTIITGS 387          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1173.1110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8D1EEP9_PIG4.610e-3550.76Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9... [more]
A0A2G9RJ73_LITCT4.900e-2361.45Uncharacterized protein (Fragment) n=1 Tax=Lithoba... [more]
A0A643C2B2_BALPH1.270e-2279.25Uncharacterized protein (Fragment) n=1 Tax=Balaeno... [more]
A0A3R7BAZ2_9STRA4.690e-2232.89Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A5N4E733_CAMDR5.820e-2278.18Dynein assembly factor with WDR repeat domains 1 n... [more]
A0A8C8D1H4_ONCTS8.430e-2243.05Uncharacterized protein n=1 Tax=Oncorhynchus tshaw... [more]
A0A8D1K9R8_PIG3.740e-2179.25Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9... [more]
A0A2P4TGK6_BAMTH6.150e-1977.36Uncharacterized protein n=1 Tax=Bambusicola thorac... [more]
A0A674C646_SALTR9.230e-1941.41Uncharacterized protein n=1 Tax=Salmo trutta TaxID... [more]
A0A8C9KXN0_SERCA6.640e-1887.23Dynein assembly factor with WD repeats 1 n=15 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1173contigH-paniculata_contig1173:17337..18267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score93.2
Seed ortholog evalue1e-16
Seed eggNOG ortholog9315.ENSMEUP00000012205
Preferred nameDAW1
KEGG koko:K19760
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
EggNOG free text desc.Dynein assembly factor with WDR repeat domains 1
EggNOG OGs3AFR9@33154,3B9C4@33208,3CZSY@33213,3JE5T@40674,489VX@7711,493NG@7742,4K0DU@9263,KOG0272@1,KOG0272@2759
COG Functional cat.A
Best tax levelMetatheria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons2
Model size408
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928882.4727738-CDS-H-paniculata_contig1173:17336..175131622928882.4727738-CDS-H-paniculata_contig1173:17336..17513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1173 17337..17513 -
1691480655.507356-CDS-H-paniculata_contig1173:17336..175131691480655.507356-CDS-H-paniculata_contig1173:17336..17513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1173 17337..17513 -
1622928882.495909-CDS-H-paniculata_contig1173:18036..182671622928882.495909-CDS-H-paniculata_contig1173:18036..18267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1173 18037..18267 -
1691480655.5198815-CDS-H-paniculata_contig1173:18036..182671691480655.5198815-CDS-H-paniculata_contig1173:18036..18267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1173 18037..18267 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1173.1110.1prot_H-paniculata_contig1173.1110.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1173 17337..18267 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1173.1110.1

>prot_H-paniculata_contig1173.1110.1 ID=prot_H-paniculata_contig1173.1110.1|Name=mRNA_H-paniculata_contig1173.1110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp
VWDVASGQCVHTLRGHNDEILDVSFNATGSKLVTASADGTSRVFNTVNGA
CQAILIGHEGEISKVLNRVVVPRLLASTCFNPQGTRILTASSDKIARLWD
ADTGDCLQILEGHTDEIFSCAFNYEGDTIITGALTL
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mRNA from alignment at H-paniculata_contig1173:17337..18267-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1173.1110.1 ID=mRNA_H-paniculata_contig1173.1110.1|Name=mRNA_H-paniculata_contig1173.1110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=931bp|location=Sequence derived from alignment at H-paniculata_contig1173:17337..18267- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTGGGATGTCGCCAGTGGACAATGCGTTCACACCCTGCGTGGACACAA CGACGAGATATTGGACGTCAGTTTCAACGCTACAGGATCGAAACTGGTGA CTGCCAGCGCCGACGGCACCTCCAGAGTGTTCAACACCGTCAACGGGGCG TGCCAGGCTATCCTCATCGGGCACGAGGGGGAAATTTCGAAGGTGCTAAA TCGTGTGGTTGTGCCTCGGCTTCTCGCGTCGGTTTTGTCTCCTCGGCATT TTTTTCACCGTTTCTGAAGGACCATACATCGTATTCTGGAGGCAAAAAGT GAAGCACCGAAGAGGGGCAGAACCACAATAATTCCGCGTGGAAACTTGCG AACGAGAGAGAGCTTTCGAGCAAGTCCGGGGAAATTGGCGACATATGCAG CCCCCCTTGATGAGATAAGTTTCAGATCTGTTGTAAAAGTAGGTTACATT CTATCCCCCCCCCCGCCGGCACCGCCTCCTCAAATCGTCGTGCGTCGATT TTCACAACAAATACAAGCTCCCAGATTCCGAATGTCGCATACCTAGAAGA CACGGCTAGAACTTCTTTCGCTTTTGTCTTGAAAGTCCTCACAAGTGTCA AGGATATATGAATTTTTTTCCGTATAACTTCAGGACCTAATCCAAGACCT AGCCCACAAAACCTGAAAAGCTACCCCTATATATTCCTAACTTCAACACC AAGCACCACAATCGCTAAACTTGCGCCCCTCGCTTGCCGCTCCTCTGGCA CCAGACGTGCTTCAATCCTCAGGGCACCCGCATCCTAACGGCTAGTAGCG ACAAGATAGCCAGACTGTGGGACGCCGACACCGGGGATTGCCTTCAGATC TTGGAGGGGCACACGGACGAGATCTTTTCTTGCGCGTTCAACTACGAGGG CGATACGATCATAACCGGTGCGCTAACCCTT
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Coding sequence (CDS) from alignment at H-paniculata_contig1173:17337..18267-

>mRNA_H-paniculata_contig1173.1110.1 ID=mRNA_H-paniculata_contig1173.1110.1|Name=mRNA_H-paniculata_contig1173.1110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at H-paniculata_contig1173:17337..18267- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTGGGATGTCGCCAGTGGACAATGCGTTCACACCCTGCGTGGACACAA
CGACGAGATATTGGACGTCAGTTTCAACGCTACAGGATCGAAACTGGTGA
CTGCCAGCGCCGACGGCACCTCCAGAGTGTTCAACACCGTCAACGGGGCG
TGCCAGGCTATCCTCATCGGGCACGAGGGGGAAATTTCGAAGGTGCTAAA
TCGTGTGGTTGTGCCTCGGCTTCTCGCGTCGGTGTGGGATGTCGCCAGTG
GACAATGCGTTCACACCCTGCGTGGACACAACGACGAGATATTGGACGTC
AGTTTCAACGCTACAGGATCGAAACTGGTGACTGCCAGCGCCGACGGCAC
CTCCAGAGTGTTCAACACCGTCAACGGGGCGTGCCAGGCTATCCTCATCG
GGCACGAGGGGGAAATTTCGAAGGTGCTAAATCGTGTGGTTGTGCCTCGG
CTTCTCGCGTCGACGTGCTTCAATCCTCAGGGCACCCGCATCCTAACGGC
TAGTAGCGACAAGATAGCCAGACTGTGGGACGCCGACACCGGGGATTGCC
TTCAGATCTTGGAGGGGCACACGGACGAGATCTTTTCTTGCGCGTTCAAC
TACGAGGGCGATACGATCATAACCGGTGCGCTAACCCTTACGTGCTTCAA
TCCTCAGGGCACCCGCATCCTAACGGCTAGTAGCGACAAGATAGCCAGAC
TGTGGGACGCCGACACCGGGGATTGCCTTCAGATCTTGGAGGGGCACACG
GACGAGATCTTTTCTTGCGCGTTCAACTACGAGGGCGATACGATCATAAC
CGGTGCGCTAACCCTT
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