mRNA_H-paniculata_contig43734.11100.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43734.11100.1
Unique NamemRNA_H-paniculata_contig43734.11100.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig43734.11100.1 vs. uniprot
Match: A0A4Y2F840_ARAVE (Uncharacterized protein n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2F840_ARAVE)

HSP 1 Score: 57.4 bits (137), Expect = 4.920e-8
Identity = 39/115 (33.91%), Postives = 56/115 (48.70%), Query Frame = 1
Query:    1 EEFWVADGGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKMLVWMMDRGEMHKFSLRGVGHVPGLVTNLFSLQVIVKQGLTVCLKEEGQPFHD-----LMGKIFSAE 327
            ++ W+AD GA+ HMTP  E    YE+ S+   V + N ET+   G G + V M+  G+     L  V  VP +  NLFS+   V +G    + + G          L+GKI S E
Sbjct:    9 KDMWLADSGASVHMTPQKEYFLSYESFSSPKDVKIGNNETMFAFGLGTVKVRMLVSGKWENNHLSDVWFVPEVSRNLFSVSRAVDKGYDFKVDKNGCYLSKDGRVRLVGKITSRE 123          
BLAST of mRNA_H-paniculata_contig43734.11100.1 vs. uniprot
Match: Q967L5_AEDAE (Uncharacterized protein n=1 Tax=Aedes aegypti TaxID=7159 RepID=Q967L5_AEDAE)

HSP 1 Score: 59.3 bits (142), Expect = 8.610e-8
Identity = 32/103 (31.07%), Postives = 54/103 (52.43%), Query Frame = 1
Query:   10 WVADGGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGKMLVWMMDRG-EMHKFSLRGVGHVPGLVTNLFSLQVIVKQGLTVCLKEEGQPFHDLMGKI 315
            W+ D GA+AHMT        +E     ++T+A+G+   I G G  ++  +D   E+ +  + GV +VPGL TNL S++ + ++ L V    +G    D  G +
Sbjct:  275 WIIDSGASAHMTCDKSFFITFEESCGGYITLADGKKTQILGEGAGVLHGIDGDDEVIRIDISGVKYVPGLSTNLISVEKLAQKKLDVSFNSDGCRIIDPKGNV 377          
BLAST of mRNA_H-paniculata_contig43734.11100.1 vs. uniprot
Match: UPI0005F40DD4 (uncharacterized protein LOC105568084 n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F40DD4)

HSP 1 Score: 58.5 bits (140), Expect = 1.370e-7
Identity = 35/113 (30.97%), Postives = 58/113 (51.33%), Query Frame = 1
Query:   10 WVADGGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGKMLVWMMDRGEMHKFSLRGVGHVPGLVTNLFSLQVIVKQGLTVCLKEEGQPFHDLMGKIFSAEKSGNMTF 348
            W+AD GA+AH+T   E    +E+ S  F ++ANGE + I G G++ V  +  G+    +L+ V  + G   NLFS+    + G+T  + +    F      +  A+K+ N  F
Sbjct:  252 WLADSGASAHVTGRREWFSQFESTSTKF-SLANGEQVSIHGRGEVEVECLVEGKWQSVTLKKVFFISGFKKNLFSIGAAGEFGVTCQINKNSMNFKKDGELVAKAKKADNNLF 363          
BLAST of mRNA_H-paniculata_contig43734.11100.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.010e-7
Identity = 35/110 (31.82%), Postives = 59/110 (53.64%), Query Frame = 1
Query:   10 WVADGGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWMMDRGEMHKFSLRGVGHVPGLVTNLFSLQVIVKQGLTVCLKEEGQPFHDLMGKIFSAEKSG 336
            W+ D GATAHMTP    +F+YE    N+ VT+A+G+ + + G G + +  +D     +  +  V H+PGL   L S+  + ++G++V  ++           I SA+K G
Sbjct:  263 WLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDG---KRIKMVEVLHIPGLDRRLLSVGKLAERGMSVEFQQNSCVIWYKSTAIASAKKVG 369          
BLAST of mRNA_H-paniculata_contig43734.11100.1 vs. uniprot
Match: A0A225UGS0_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGS0_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.560e-7
Identity = 32/110 (29.09%), Postives = 59/110 (53.64%), Query Frame = 1
Query:   10 WVADGGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWMMDRGEMHKFSLRGVGHVPGLVTNLFSLQVIVKQGLTVCLKEEGQPFHDLMGKIFSAEKSG 336
            W+ D GATAHMTP  + +F+Y   S +++VT+A+G+ + + G G + +  +D   +       V ++PGL   L S+  + ++G++V  +       D    + S +K G
Sbjct:  245 WLIDSGATAHMTPHRDDLFEYSAMSKDMYVTIADGKKIRVAGTGSVRLTGIDAKSIRMVE---VLYIPGLDRRLLSVGKLAERGMSVEFQRNSCVIWDKSKAVASGKKIG 351          
BLAST of mRNA_H-paniculata_contig43734.11100.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.770e-7
Identity = 31/87 (35.63%), Postives = 52/87 (59.77%), Query Frame = 1
Query:   10 WVADGGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWMMDRGEMHKFSLRGVGHVPGLVTNLFSLQVIVKQGLTV 267
            W+ D GATAHMTP  E +FDY+   +++ VT+A+G+ + + G G + +  +D     +  +  V H+PGL   L S+  + ++GL V
Sbjct:  160 WLIDSGATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDG---KRIRMLDVLHIPGLDRRLLSVGKLAERGLNV 243          
BLAST of mRNA_H-paniculata_contig43734.11100.1 vs. uniprot
Match: A0A6A3X5U6_9STRA (CCHC-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3X5U6_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.750e-7
Identity = 33/112 (29.46%), Postives = 63/112 (56.25%), Query Frame = 1
Query:   10 WVADGGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWMMDRGEMHKFSLRGVGHVPGLVTNLFSLQVIVKQGLTVCLKEEGQPFHDLMGKIFSAEKSGNM 342
            W+ D GATAHMTP    +F+Y+   SN+ VT+A+G+ + + G G + +  +D     +  +  V ++PGL   L S++ + ++G++V  +++     +    I S +K G +
Sbjct:  266 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDG---KRIKMIDVLYIPGLDRQLLSVRRLAERGMSVEFQKKSCTIWNKSKAIASGKKVGKV 374          
BLAST of mRNA_H-paniculata_contig43734.11100.1 vs. uniprot
Match: A0A6A4BQ03_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BQ03_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 7.480e-7
Identity = 33/110 (30.00%), Postives = 61/110 (55.45%), Query Frame = 1
Query:   10 WVADGGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWMMDRGEMHKFSLRGVGHVPGLVTNLFSLQVIVKQGLTVCLKEEGQPFHDLMGKIFSAEKSG 336
            W+ D GATAHMTP    +F+Y+   SN+ VT+A+G+ + + G G + +  +D     +  +  V ++PGL   L S+  + ++G++V  +++     +    I S +K G
Sbjct:  242 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDG---KRIKMIDVLYIPGLDRQLLSVSRLAERGMSVEFQKKSCTIWNKSKAIASGKKIG 348          
BLAST of mRNA_H-paniculata_contig43734.11100.1 vs. uniprot
Match: A0A2P4XNP3_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XNP3_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.400e-6
Identity = 31/86 (36.05%), Postives = 52/86 (60.47%), Query Frame = 1
Query:   10 WVADGGATAHMTPSNELMFDYE-TCSNLFVTVANGETLPIEGYGKMLVWMMDRGEMHKFSLRGVGHVPGLVTNLFSLQVIVKQGLT 264
            W+ D GAT+HMTP  E +FD E T S++ VT+A+G+ L + G G + +  ++   +    +  V ++PGL   L S+  + ++GLT
Sbjct:  155 WLIDSGATSHMTPFREDLFDLEGTVSSIEVTIADGKKLRVAGQGTVRLTSLNGKHI---KMMEVLYIPGLDRRLLSVGKLAERGLT 237          
BLAST of mRNA_H-paniculata_contig43734.11100.1 vs. uniprot
Match: A0A0V1HEX2_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1HEX2_9BILA)

HSP 1 Score: 54.3 bits (129), Expect = 4.390e-6
Identity = 29/96 (30.21%), Postives = 51/96 (53.12%), Query Frame = 1
Query:   10 WVADGGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKMLVWMMDRGEMHKFSLRGVGHVPGLVTNLFSLQVIVKQGLTVCLKEEGQPF 294
            W+AD GA+ HMT + E + D+ T    + V + NG+ +P+ G+G +   +  +G+     +  V +VP L  NLFS++   ++G       +G  F
Sbjct:  151 WLADSGASQHMTRNKEYLADFVTFPQPVNVKIGNGDAIPVYGWGTVNFKVFIKGKWILNRMEVVWYVPKLGLNLFSIEKAAEKGFNFTANVDGCTF 246          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43734.11100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y2F840_ARAVE4.920e-833.91Uncharacterized protein n=1 Tax=Araneus ventricosu... [more]
Q967L5_AEDAE8.610e-831.07Uncharacterized protein n=1 Tax=Aedes aegypti TaxI... [more]
UPI0005F40DD41.370e-730.97uncharacterized protein LOC105568084 n=1 Tax=Volle... [more]
A0A329SN38_9STRA2.010e-731.82Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A225UGS0_9STRA2.560e-729.09Integrase, catalytic core protein (Fragment) n=1 T... [more]
A0A3M6VPY8_9STRA2.770e-735.63CCHC-type domain-containing protein n=1 Tax=Perono... [more]
A0A6A3X5U6_9STRA3.750e-729.46CCHC-type domain-containing protein n=5 Tax=Phytop... [more]
A0A6A4BQ03_9STRA7.480e-730.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A2P4XNP3_9STRA1.400e-636.05Integrase catalytic core protein n=1 Tax=Phytophth... [more]
A0A0V1HEX2_9BILA4.390e-630.21Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43734contigH-paniculata_contig43734:921..1280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue8.9e-09
Seed eggNOG ortholog67593.Physo138220
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930323.2738054-CDS-H-paniculata_contig43734:920..12801622930323.2738054-CDS-H-paniculata_contig43734:920..1280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43734 921..1280 +
1691481241.455782-CDS-H-paniculata_contig43734:920..12801691481241.455782-CDS-H-paniculata_contig43734:920..1280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43734 921..1280 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43734.11100.1prot_H-paniculata_contig43734.11100.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43734 921..1280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43734.11100.1

>prot_H-paniculata_contig43734.11100.1 ID=prot_H-paniculata_contig43734.11100.1|Name=mRNA_H-paniculata_contig43734.11100.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
EEFWVADGGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGKMLV
WMMDRGEMHKFSLRGVGHVPGLVTNLFSLQVIVKQGLTVCLKEEGQPFHD
LMGKIFSAEKSGNMTFCSYS
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mRNA from alignment at H-paniculata_contig43734:921..1280+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43734.11100.1 ID=mRNA_H-paniculata_contig43734.11100.1|Name=mRNA_H-paniculata_contig43734.11100.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=360bp|location=Sequence derived from alignment at H-paniculata_contig43734:921..1280+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAGTTTTGGGTGGCCGATGGTGGGGCTACGGCCCACATGACTCCGTC TAACGAATTGATGTTTGATTACGAAACCTGCAGTAATTTGTTTGTGACGG TGGCTAACGGCGAAACGCTTCCGATTGAGGGATATGGTAAGATGTTGGTA TGGATGATGGATCGGGGCGAGATGCACAAATTCAGCTTGAGGGGTGTAGG GCATGTTCCGGGTCTGGTCACGAATTTATTTTCCCTACAGGTTATAGTGA AGCAGGGACTCACCGTCTGTTTGAAGGAGGAGGGGCAGCCATTTCACGAC CTAATGGGAAAGATCTTTAGTGCAGAAAAATCGGGAAACATGACGTTTTG TAGCTACTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig43734:921..1280+

>mRNA_H-paniculata_contig43734.11100.1 ID=mRNA_H-paniculata_contig43734.11100.1|Name=mRNA_H-paniculata_contig43734.11100.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig43734:921..1280+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAGTTTTGGGTGGCCGATGGTGGGGCTACGGCCCACATGACTCCGTC
TAACGAATTGATGTTTGATTACGAAACCTGCAGTAATTTGTTTGTGACGG
TGGCTAACGGCGAAACGCTTCCGATTGAGGGATATGGTAAGATGTTGGTA
TGGATGATGGATCGGGGCGAGATGCACAAATTCAGCTTGAGGGGTGTAGG
GCATGTTCCGGGTCTGGTCACGAATTTATTTTCCCTACAGGTTATAGTGA
AGCAGGGACTCACCGTCTGTTTGAAGGAGGAGGGGCAGCCATTTCACGAC
CTAATGGGAAAGATCTTTAGTGCAGAAAAATCGGGAAACATGACGTTTTG
TAGCTACTCGGAGGAGTTTTGGGTGGCCGATGGTGGGGCTACGGCCCACA
TGACTCCGTCTAACGAATTGATGTTTGATTACGAAACCTGCAGTAATTTG
TTTGTGACGGTGGCTAACGGCGAAACGCTTCCGATTGAGGGATATGGTAA
GATGTTGGTATGGATGATGGATCGGGGCGAGATGCACAAATTCAGCTTGA
GGGGTGTAGGGCATGTTCCGGGTCTGGTCACGAATTTATTTTCCCTACAG
GTTATAGTGAAGCAGGGACTCACCGTCTGTTTGAAGGAGGAGGGGCAGCC
ATTTCACGACCTAATGGGAAAGATCTTTAGTGCAGAAAAATCGGGAAACA
TGACGTTTTGTAGCTACTCG
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