prot_H-paniculata_contig4370.11098.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4370.11098.1
Unique Nameprot_H-paniculata_contig4370.11098.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length106
Homology
BLAST of mRNA_H-paniculata_contig4370.11098.1 vs. uniprot
Match: D7G3G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G6_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 2.540e-18
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 0
Query:   14 IFAEGNPSVSFATFSPNGKYVLAGTLDDSLRLWQIGHDTKC 54
            IFAEGNPSVSF+TFSPNGKYVLAGTLDDSLRLWQIGHDTKC
Sbjct:  247 IFAEGNPSVSFSTFSPNGKYVLAGTLDDSLRLWQIGHDTKC 287          
BLAST of mRNA_H-paniculata_contig4370.11098.1 vs. uniprot
Match: A0A836C9R4_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9R4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 6.310e-15
Identity = 34/57 (59.65%), Postives = 46/57 (80.70%), Query Frame = 0
Query:    1 RLWDSSSGACLKTIFAEGNPSVSFATFSPNGKYVLAGTLDDSLRLWQIGHD---TKC 54
            R+WD+++G CLKTIFAEGNP+V FAT++PN +++LAGTLD  +RLW +G     TKC
Sbjct:  193 RIWDTTTGNCLKTIFAEGNPAVCFATYTPNSEFILAGTLDHRIRLWTVGTTGTPTKC 249          
BLAST of mRNA_H-paniculata_contig4370.11098.1 vs. uniprot
Match: A0A367IQ57_RHIST (WD repeat-containing protein 5 (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367IQ57_RHIST)

HSP 1 Score: 74.3 bits (181), Expect = 1.060e-14
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 0
Query:    1 RLWDSSSGACLKTIFAEGNPSVSFATFSPNGKYVLAGTLDDSLRLWQIGHDTKC 54
            R+WD++SG CLKT+  + NP VSF  FSPNGKY+LA TLD++LRLW   H  KC
Sbjct:    1 RIWDTASGQCLKTLVDDDNPPVSFVKFSPNGKYILASTLDNTLRLWNY-HTGKC 53          
BLAST of mRNA_H-paniculata_contig4370.11098.1 vs. uniprot
Match: A0A7S2E3L7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E3L7_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.030e-13
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 0
Query:    1 RLWDSSSGACLKTIFAEGNPSVSFATFSPNGKYVLAGTLDDSLRLWQI 48
            R+WD+++G CLKTI+A GNP VS   FSPNG++VL+GTLD  LRLW +
Sbjct:   10 RVWDAATGECLKTIYAGGNPPVSHVLFSPNGRFVLSGTLDSKLRLWDV 57          
BLAST of mRNA_H-paniculata_contig4370.11098.1 vs. uniprot
Match: A0A0A9GBI3_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9GBI3_ARUDO)

HSP 1 Score: 68.2 bits (165), Expect = 3.270e-12
Identity = 29/46 (63.04%), Postives = 38/46 (82.61%), Query Frame = 0
Query:    1 RLWDSSSGACLKTIFAEGNPSVSFATFSPNGKYVLAGTLDDSLRLW 46
            R+WDS++G C+KT+  + +P VSFA FSPNGK+VLA TLD +LRLW
Sbjct:   12 RVWDSATGHCVKTLIDDESPPVSFAKFSPNGKFVLAATLDSTLRLW 57          
BLAST of mRNA_H-paniculata_contig4370.11098.1 vs. uniprot
Match: UPI001C4B3C5D (WD repeat-containing protein 5-like n=1 Tax=Plectropomus leopardus TaxID=160734 RepID=UPI001C4B3C5D)

HSP 1 Score: 67.0 bits (162), Expect = 5.180e-12
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 0
Query:    1 RLWDSSSGACLKTIFAEGNPSVSFATFSPNGKYVLAGTLDDSLRL 45
            R+WD++SG CLKT+  + NP VSF  FSPNGKY+LA TLD++L+L
Sbjct:    1 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 45          
BLAST of mRNA_H-paniculata_contig4370.11098.1 vs. uniprot
Match: A0A183QUZ6_9TREM (WD_REPEATS_REGION domain-containing protein n=1 Tax=Schistosoma rodhaini TaxID=6188 RepID=A0A183QUZ6_9TREM)

HSP 1 Score: 69.7 bits (169), Expect = 7.800e-12
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 0
Query:    1 RLWDSSSGACLKTIFAEGNPSVSFATFSPNGKYVLAGTLDDSLRLW 46
            R+WD+ SG CLKT+  + NP VSF  FSPNGKY+LA TLD  L+LW
Sbjct:  185 RIWDTGSGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDSCLKLW 230          
BLAST of mRNA_H-paniculata_contig4370.11098.1 vs. uniprot
Match: A0A6G1GDU0_9PEZI (WD40 repeat-like protein n=1 Tax=Eremomyces bilateralis CBS 781.70 TaxID=1392243 RepID=A0A6G1GDU0_9PEZI)

HSP 1 Score: 70.1 bits (170), Expect = 8.170e-12
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 0
Query:    1 RLWDSSSGACLKTIFAEGNPSVSFATFSPNGKYVLAGTLDDSLRLWQIGHDTKC 54
            R+WD+++G CL+T+  E N SV+ A FSPNGK+VLA TLD S+RLW  G   +C
Sbjct:  316 RIWDTATGQCLRTLVHEDNASVTSARFSPNGKFVLAWTLDSSIRLWDYGERRRC 369          
BLAST of mRNA_H-paniculata_contig4370.11098.1 vs. uniprot
Match: A0A0L7K5C8_9NEOP (Will die slowly (Fragment) n=1 Tax=Operophtera brumata TaxID=104452 RepID=A0A0L7K5C8_9NEOP)

HSP 1 Score: 67.0 bits (162), Expect = 9.540e-12
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 0
Query:    1 RLWDSSSGACLKTIFAEGNPSVSFATFSPNGKYVLAGTLDDSLRL 45
            R+WD++SG CLKT+  + NP VSF  FSPNGKY+LA TLD++L+L
Sbjct:    1 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 45          
BLAST of mRNA_H-paniculata_contig4370.11098.1 vs. uniprot
Match: UPI0009A35FF3 (WD repeat-containing protein 5-like n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A35FF3)

HSP 1 Score: 67.0 bits (162), Expect = 9.740e-12
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 0
Query:    1 RLWDSSSGACLKTIFAEGNPSVSFATFSPNGKYVLAGTLDDSLRL 45
            R+WD++SG CLKT+  + NP VSF  FSPNGKY+LA TLD++L+L
Sbjct:   18 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 62          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4370.11098.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3G6_ECTSI2.540e-1897.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C9R4_9STRA6.310e-1559.65WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A367IQ57_RHIST1.060e-1461.11WD repeat-containing protein 5 (Fragment) n=1 Tax=... [more]
A0A7S2E3L7_9STRA3.030e-1362.50Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A0A9GBI3_ARUDO3.270e-1263.04Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]
UPI001C4B3C5D5.180e-1262.22WD repeat-containing protein 5-like n=1 Tax=Plectr... [more]
A0A183QUZ6_9TREM7.800e-1263.04WD_REPEATS_REGION domain-containing protein n=1 Ta... [more]
A0A6G1GDU0_9PEZI8.170e-1255.56WD40 repeat-like protein n=1 Tax=Eremomyces bilate... [more]
A0A0L7K5C8_9NEOP9.540e-1262.22Will die slowly (Fragment) n=1 Tax=Operophtera bru... [more]
UPI0009A35FF39.740e-1262.22WD repeat-containing protein 5-like n=1 Tax=Rhinco... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 7..47
e-value: 0.022
score: 23.9
coord: 51..91
e-value: 1.8E-7
score: 40.8
IPR001680WD40 repeatPFAMPF00400WD40coord: 10..46
e-value: 4.5E-4
score: 21.0
coord: 53..91
e-value: 2.3E-7
score: 31.4
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 15..48
score: 10.408
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 58..100
score: 12.246
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..106
e-value: 1.3E-32
score: 114.8
NoneNo IPR availablePANTHERPTHR22847WD40 REPEAT PROTEINcoord: 1..105
IPR037866WD40-repeat-containing protein Swd3/WDR5PANTHERPTHR22847:SF516WD REPEAT-CONTAINING PROTEIN 5Bcoord: 1..105
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 78..92
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..106
score: 22.57
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 1..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4370contigH-paniculata_contig4370:8300..9812 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4370.11098.1mRNA_H-paniculata_contig4370.11098.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4370 8300..9812 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4370.11098.1 ID=prot_H-paniculata_contig4370.11098.1|Name=mRNA_H-paniculata_contig4370.11098.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
RLWDSSSGACLKTIFAEGNPSVSFATFSPNGKYVLAGTLDDSLRLWQIGH
DTKCVKTYKGHQNRRYSVTACFDGNKRVVSGSEDGNIYVWDINSSKSVVQ
KLPGHN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR037866Swd3/WDR5
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf