mRNA_H-paniculata_contig4370.11098.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4370.11098.1
Unique NamemRNA_H-paniculata_contig4370.11098.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4370.11098.1 vs. uniprot
Match: D7G3G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G6_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 2.540e-18
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:   40 IFAEGNPSVSFATFSPNGKYVLAGTLDDSLRLWQIGHDTKC 162
            IFAEGNPSVSF+TFSPNGKYVLAGTLDDSLRLWQIGHDTKC
Sbjct:  247 IFAEGNPSVSFSTFSPNGKYVLAGTLDDSLRLWQIGHDTKC 287
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BLAST of mRNA_H-paniculata_contig4370.11098.1 vs. uniprot
Match: A0A836C9R4_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9R4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 6.310e-15
Identity = 34/57 (59.65%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 RLWDSSSGACLKTIFAEGNPSVSFATFSPNGKYVLAGTLDDSLRLWQIGHD---TKC 162
            R+WD+++G CLKTIFAEGNP+V FAT++PN +++LAGTLD  +RLW +G     TKC
Sbjct:  193 RIWDTTTGNCLKTIFAEGNPAVCFATYTPNSEFILAGTLDHRIRLWTVGTTGTPTKC 249
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BLAST of mRNA_H-paniculata_contig4370.11098.1 vs. uniprot
Match: A0A367IQ57_RHIST (WD repeat-containing protein 5 (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367IQ57_RHIST)

HSP 1 Score: 74.3 bits (181), Expect = 1.060e-14
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 RLWDSSSGACLKTIFAEGNPSVSFATFSPNGKYVLAGTLDDSLRLWQIGHDTKC 162
            R+WD++SG CLKT+  + NP VSF  FSPNGKY+LA TLD++LRLW   H  KC
Sbjct:    1 RIWDTASGQCLKTLVDDDNPPVSFVKFSPNGKYILASTLDNTLRLWNY-HTGKC 53
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BLAST of mRNA_H-paniculata_contig4370.11098.1 vs. uniprot
Match: A0A7S2E3L7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E3L7_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.030e-13
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 RLWDSSSGACLKTIFAEGNPSVSFATFSPNGKYVLAGTLDDSLRLWQI 144
            R+WD+++G CLKTI+A GNP VS   FSPNG++VL+GTLD  LRLW +
Sbjct:   10 RVWDAATGECLKTIYAGGNPPVSHVLFSPNGRFVLSGTLDSKLRLWDV 57
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BLAST of mRNA_H-paniculata_contig4370.11098.1 vs. uniprot
Match: A0A0A9GBI3_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9GBI3_ARUDO)

HSP 1 Score: 68.2 bits (165), Expect = 3.270e-12
Identity = 29/46 (63.04%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    1 RLWDSSSGACLKTIFAEGNPSVSFATFSPNGKYVLAGTLDDSLRLW 138
            R+WDS++G C+KT+  + +P VSFA FSPNGK+VLA TLD +LRLW
Sbjct:   12 RVWDSATGHCVKTLIDDESPPVSFAKFSPNGKFVLAATLDSTLRLW 57
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BLAST of mRNA_H-paniculata_contig4370.11098.1 vs. uniprot
Match: UPI001C4B3C5D (WD repeat-containing protein 5-like n=1 Tax=Plectropomus leopardus TaxID=160734 RepID=UPI001C4B3C5D)

HSP 1 Score: 67.0 bits (162), Expect = 5.180e-12
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 RLWDSSSGACLKTIFAEGNPSVSFATFSPNGKYVLAGTLDDSLRL 135
            R+WD++SG CLKT+  + NP VSF  FSPNGKY+LA TLD++L+L
Sbjct:    1 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 45
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BLAST of mRNA_H-paniculata_contig4370.11098.1 vs. uniprot
Match: A0A183QUZ6_9TREM (WD_REPEATS_REGION domain-containing protein n=1 Tax=Schistosoma rodhaini TaxID=6188 RepID=A0A183QUZ6_9TREM)

HSP 1 Score: 69.7 bits (169), Expect = 7.800e-12
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 RLWDSSSGACLKTIFAEGNPSVSFATFSPNGKYVLAGTLDDSLRLW 138
            R+WD+ SG CLKT+  + NP VSF  FSPNGKY+LA TLD  L+LW
Sbjct:  185 RIWDTGSGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDSCLKLW 230
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BLAST of mRNA_H-paniculata_contig4370.11098.1 vs. uniprot
Match: A0A6G1GDU0_9PEZI (WD40 repeat-like protein n=1 Tax=Eremomyces bilateralis CBS 781.70 TaxID=1392243 RepID=A0A6G1GDU0_9PEZI)

HSP 1 Score: 70.1 bits (170), Expect = 8.170e-12
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 RLWDSSSGACLKTIFAEGNPSVSFATFSPNGKYVLAGTLDDSLRLWQIGHDTKC 162
            R+WD+++G CL+T+  E N SV+ A FSPNGK+VLA TLD S+RLW  G   +C
Sbjct:  316 RIWDTATGQCLRTLVHEDNASVTSARFSPNGKFVLAWTLDSSIRLWDYGERRRC 369
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BLAST of mRNA_H-paniculata_contig4370.11098.1 vs. uniprot
Match: A0A0L7K5C8_9NEOP (Will die slowly (Fragment) n=1 Tax=Operophtera brumata TaxID=104452 RepID=A0A0L7K5C8_9NEOP)

HSP 1 Score: 67.0 bits (162), Expect = 9.540e-12
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 RLWDSSSGACLKTIFAEGNPSVSFATFSPNGKYVLAGTLDDSLRL 135
            R+WD++SG CLKT+  + NP VSF  FSPNGKY+LA TLD++L+L
Sbjct:    1 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 45
[Close]
BLAST of mRNA_H-paniculata_contig4370.11098.1 vs. uniprot
Match: UPI0009A35FF3 (WD repeat-containing protein 5-like n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A35FF3)

HSP 1 Score: 67.0 bits (162), Expect = 9.740e-12
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 RLWDSSSGACLKTIFAEGNPSVSFATFSPNGKYVLAGTLDDSLRL 135
            R+WD++SG CLKT+  + NP VSF  FSPNGKY+LA TLD++L+L
Sbjct:   18 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 62
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4370.11098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3G6_ECTSI2.540e-1897.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C9R4_9STRA6.310e-1559.65WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A367IQ57_RHIST1.060e-1461.11WD repeat-containing protein 5 (Fragment) n=1 Tax=... [more]
A0A7S2E3L7_9STRA3.030e-1362.50Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A0A9GBI3_ARUDO3.270e-1263.04Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]
UPI001C4B3C5D5.180e-1262.22WD repeat-containing protein 5-like n=1 Tax=Plectr... [more]
A0A183QUZ6_9TREM7.800e-1263.04WD_REPEATS_REGION domain-containing protein n=1 Ta... [more]
A0A6G1GDU0_9PEZI8.170e-1255.56WD40 repeat-like protein n=1 Tax=Eremomyces bilate... [more]
A0A0L7K5C8_9NEOP9.540e-1262.22Will die slowly (Fragment) n=1 Tax=Operophtera bru... [more]
UPI0009A35FF39.740e-1262.22WD repeat-containing protein 5-like n=1 Tax=Rhinco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4370contigH-paniculata_contig4370:8300..9812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.4
Seed ortholog evalue1.1e-15
Seed eggNOG ortholog2880.D7G3G6
Preferred nameWDR5
KEGG koko:K14963
KEGG Pathwayko04934,map04934
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000123,GO:0000151,GO:0001501,GO:0001654,GO:0002682,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005671,GO:0005815,GO:0005856,GO:0005929,GO:0006109,GO:0006111,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0007399,GO:0007423,GO:0007444,GO:0007482,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009791,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010228,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010675,GO:0010676,GO:0010906,GO:0010907,GO:0015630,GO:0016043,GO:0016278,GO:0016279,GO:0016569,GO:0016570,GO:0016571,GO:0016573,GO:0016740,GO:0016741,GO:0018022,GO:0018024,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0022008,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030162,GO:0030182,GO:0031175,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031461,GO:0031974,GO:0031981,GO:0032259,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032501,GO:0032502,GO:0032991,GO:0034708,GO:0034968,GO:0035064,GO:0035097,GO:0035216,GO:0035295,GO:0035947,GO:0035948,GO:0036064,GO:0036211,GO:0042054,GO:0042176,GO:0042393,GO:0042995,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043255,GO:0043412,GO:0043414,GO:0043543,GO:0043687,GO:0043966,GO:0043967,GO:0043981,GO:0043982,GO:0043984,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0044545,GO:0044665,GO:0044666,GO:0044782,GO:0045595,GO:0045637,GO:0045652,GO:0045722,GO:0045732,GO:0045862,GO:0045893,GO:0045913,GO:0045935,GO:0045944,GO:0048188,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048608,GO:0048666,GO:0048699,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051173,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051568,GO:0060255,GO:0060271,GO:0060429,GO:0061136,GO:0061458,GO:0062012,GO:0062013,GO:0065007,GO:0070013,GO:0070925,GO:0071339,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140030,GO:0140034,GO:0140096,GO:1900402,GO:1901564,GO:1901800,GO:1902493,GO:1902494,GO:1902562,GO:1902680,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1903508,GO:1903706,GO:1990234,GO:2000026,GO:2000058,GO:2000060,GO:2000112,GO:2001141
EggNOG free text desc.WD repeat-containing protein
EggNOG OGsKOG0266@1,KOG0266@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons3
Model size318
Cds size318
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4370.11098.1prot_H-paniculata_contig4370.11098.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4370 8300..9812 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930323.1289146-CDS-H-paniculata_contig4370:8299..84411622930323.1289146-CDS-H-paniculata_contig4370:8299..8441Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4370 8300..8441 -
1691481241.4124053-CDS-H-paniculata_contig4370:8299..84411691481241.4124053-CDS-H-paniculata_contig4370:8299..8441Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4370 8300..8441 -
1622930323.141813-CDS-H-paniculata_contig4370:8809..89201622930323.141813-CDS-H-paniculata_contig4370:8809..8920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4370 8810..8920 -
1691481241.42477-CDS-H-paniculata_contig4370:8809..89201691481241.42477-CDS-H-paniculata_contig4370:8809..8920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4370 8810..8920 -
1622930323.1567461-CDS-H-paniculata_contig4370:9747..98121622930323.1567461-CDS-H-paniculata_contig4370:9747..9812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4370 9748..9812 -
1691481241.4333966-CDS-H-paniculata_contig4370:9747..98121691481241.4333966-CDS-H-paniculata_contig4370:9747..9812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4370 9748..9812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4370.11098.1

>prot_H-paniculata_contig4370.11098.1 ID=prot_H-paniculata_contig4370.11098.1|Name=mRNA_H-paniculata_contig4370.11098.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
RLWDSSSGACLKTIFAEGNPSVSFATFSPNGKYVLAGTLDDSLRLWQIGH
DTKCVKTYKGHQNRRYSVTACFDGNKRVVSGSEDGNIYVWDINSSKSVVQ
KLPGHN
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mRNA from alignment at H-paniculata_contig4370:8300..9812-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4370.11098.1 ID=mRNA_H-paniculata_contig4370.11098.1|Name=mRNA_H-paniculata_contig4370.11098.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1513bp|location=Sequence derived from alignment at H-paniculata_contig4370:8300..9812- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACTATGGGATAGCAGCTCGGGTGCTTGCCTGAAGACCATCTTCGCAGA
AGGCAATCCGTCTGTGTGAGTCTCTGAACAAGCCCCTTGTTGGATCTATT
TACTCCTGGACTCCATCTACTACTCCCTGTCAATTCTCCGTGACGACAGT
TTTCCTACTGTGACACAAAGATTTGCGTGGTTGCCACAAATATCTTGATA
TCCGGCAATCGAAGAGCGTTTGGGAGAGTTTGCACGTTAGTAGTTGCGAA
AATCGAGTCAAAAAAGCTTTCGCCGGGCGTAAGATACATTTATTAATCCT
GTACACTCAGGGACTGTTGGGGATTGAAAGAGGAGCGATCATAGTTGAAA
TTGATTTGCTACGCGTGGTAGGTGAACCCGAGTATATTTTGTTGTCTCAT
GTAGCCCATATGCGCATTCACCATGCTTCTGTAAGAATCCACAAATTATA
ACGCTGACCCTTACCCTTGTGTAATTTCAGCAGGTCGTTCGTGATACCCG
CGATGGTCTGTGAATCGTCATCTAGCAGATATGCATCTACTTCTGGAGAA
TAATCTGGGTTGTAAAAGTTACAGAGAAATGCTGAGATCGTCACTGAACA
TCGCCACTGTACTCCTCGGATTCATTACTTCTTTGCTGAAATCGGTTCAG
TACTTGACGGAAACGGGAATATTTGCATTTTTTGTGTCAAGCTTCTTTTG
TCGTTTTTTTTTTTTCATGGAATTAATATTCCGTATCATGCCCCCTTACA
TGGACTATTTACTGGTACTGGTACGGCTACTGAAGCCATACTGTACCGCA
CTTCTTTGGAGAGATGCGTACAGAATCAATTATTCCGTTTTCAATGGATC
CTATCCTTGTGTGTGCCTGTTTGTTGTGTTGGTTTGGAACAGGTCATTTG
CGACGTTTTCGCCCAACGGGAAGTACGTGCTTGCAGGCACCCTCGACGAC
TCCCTTCGACTGTGGCAGATCGGGCACGATACAAAATGTGTCAAGACTTA
CAAGTGAGTCAGGGTCTTGTACTTTTTGTGTGTCTTATATCTGATGGGGT
CATGGCAACACTTCCTGACTAAATCTTTGGGCTGATTTTATTGGAAATGT
TGTACACCGCAAACGCCAAGAATCCCGTTTTGGGAACGCTCTTTAAGCGT
TTCTCACAGTTTCTCACAGAGAAGCCATCGTCGATAGTTTGAAACCCTTG
ATACTGTGGAAATTCGGAGTCCTAAACTGGGTTGCGAAGTGTGGATATCC
CTGTCAACCTGCAGTGGCGCCATCGTGTAAACGTTGATGAAATTTGTCCA
ACCCCGAGGATGGAATATGAACCGTGCCCAAATGTATCGTGAAGACAATA
TCATCGCATGTTTTTCTGCAGGGGGCACCAAAACCGGCGCTACTCAGTGA
CCGCGTGCTTTGACGGCAACAAGCGCGTCGTGTCGGGATCGGAGGACGGG
AACATTTACGTCTGGGATATCAACAGCAGCAAGTCTGTTGTGCAGAAGCT
TCCAGGGCACAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig4370:8300..9812-

>mRNA_H-paniculata_contig4370.11098.1 ID=mRNA_H-paniculata_contig4370.11098.1|Name=mRNA_H-paniculata_contig4370.11098.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig4370:8300..9812- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACTATGGGATAGCAGCTCGGGTGCTTGCCTGAAGACCATCTTCGCAGA
AGGCAATCCGTCTGTCGACTATGGGATAGCAGCTCGGGTGCTTGCCTGAA
GACCATCTTCGCAGAAGGCAATCCGTCTGTGTCATTTGCGACGTTTTCGC
CCAACGGGAAGTACGTGCTTGCAGGCACCCTCGACGACTCCCTTCGACTG
TGGCAGATCGGGCACGATACAAAATGTGTCAAGACTTACAAGTCATTTGC
GACGTTTTCGCCCAACGGGAAGTACGTGCTTGCAGGCACCCTCGACGACT
CCCTTCGACTGTGGCAGATCGGGCACGATACAAAATGTGTCAAGACTTAC
AAGGGGCACCAAAACCGGCGCTACTCAGTGACCGCGTGCTTTGACGGCAA
CAAGCGCGTCGTGTCGGGATCGGAGGACGGGAACATTTACGTCTGGGATA
TCAACAGCAGCAAGTCTGTTGTGCAGAAGCTTCCAGGGCACAATGGGGCA
CCAAAACCGGCGCTACTCAGTGACCGCGTGCTTTGACGGCAACAAGCGCG
TCGTGTCGGGATCGGAGGACGGGAACATTTACGTCTGGGATATCAACAGC
AGCAAGTCTGTTGTGCAGAAGCTTCCAGGGCACAAT
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