mRNA_H-paniculata_contig43652.11093.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43652.11093.1
Unique NamemRNA_H-paniculata_contig43652.11093.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig43652.11093.1 vs. uniprot
Match: D7FK80_ECTSI (Fructose-bisphosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK80_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 4.400e-33
Identity = 59/74 (79.73%), Postives = 64/74 (86.49%), Query Frame = 1
Query:    1 FPLPLFSRAGKLRVLYEGFPMALIIEQAGGSASTGMFNGSIGRVLEVVPKGIHERCPIILGNPHFVEKVLSEYQ 222
            +P    S  GKLRVLYEGFPMALIIEQAGGSASTGMFNGSIGRVLE+ PK IHERCPII+GNP FVE+VL EY+
Sbjct:  171 YPADKKSTKGKLRVLYEGFPMALIIEQAGGSASTGMFNGSIGRVLEITPKDIHERCPIIIGNPPFVERVLDEYK 244          
BLAST of mRNA_H-paniculata_contig43652.11093.1 vs. uniprot
Match: A0A836CP10_9STRA (Fructose-bisphosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP10_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.220e-27
Identity = 54/73 (73.97%), Postives = 58/73 (79.45%), Query Frame = 1
Query:    1 FPLPLFSRAGKLRVLYEGFPMALIIEQAGGSASTGMFNGSIGRVLEVVPKGIHERCPIILGNPHFVEKVLSEY 219
            +P    SR GKLRVLYEGFPMALIIEQAGG ASTGMFNGSI RVLE+ P  IH++CPIILG P  VE VL EY
Sbjct:  267 YPADKKSRGGKLRVLYEGFPMALIIEQAGGMASTGMFNGSIQRVLEIKPTSIHDKCPIILGTPSMVESVLKEY 339          
BLAST of mRNA_H-paniculata_contig43652.11093.1 vs. uniprot
Match: F0Y4K5_AURAN (Fructose-bisphosphatase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4K5_AURAN)

HSP 1 Score: 103 bits (257), Expect = 4.010e-25
Identity = 47/74 (63.51%), Postives = 61/74 (82.43%), Query Frame = 1
Query:    1 FPLPLFSRAGKLRVLYEGFPMALIIEQAGGSASTGMFNGSIGRVLEVVPKGIHERCPIILGNPHFVEKVLSEYQ 222
            +P  + S+ GKLRVLYEGFPMAL++E+AGG ASTGMFNGS+ R+L++VP  IHERCP+ILG P  V+ VL+ Y+
Sbjct:  230 YPADVKSKKGKLRVLYEGFPMALLVERAGGVASTGMFNGSVQRMLDLVPTSIHERCPVILGAPRDVDLVLNRYK 303          
BLAST of mRNA_H-paniculata_contig43652.11093.1 vs. uniprot
Match: A0A7S2XVM0_9STRA (Fructose-bisphosphatase n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVM0_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.220e-24
Identity = 45/74 (60.81%), Postives = 60/74 (81.08%), Query Frame = 1
Query:    1 FPLPLFSRAGKLRVLYEGFPMALIIEQAGGSASTGMFNGSIGRVLEVVPKGIHERCPIILGNPHFVEKVLSEYQ 222
            +P    S  GKLR++YEG+PMA++IE+AGGSASTGMF G IGR++E+VP+GIH RCPII+GN   V++VL  Y+
Sbjct:  262 YPADSKSPNGKLRLMYEGYPMAMLIEEAGGSASTGMFKGGIGRIMEIVPEGIHARCPIIMGNTELVDRVLGYYK 335          
BLAST of mRNA_H-paniculata_contig43652.11093.1 vs. uniprot
Match: F0XYF8_AURAN (FBPase_C domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYF8_AURAN)

HSP 1 Score: 95.5 bits (236), Expect = 3.200e-24
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 1
Query:    1 FPLPLFSRAGKLRVLYEGFPMALIIEQAGGSASTGMFNGSIGRVLEVVPKGIHERCPIILGNPHFVEKVLSEY 219
            +P    S  GKLRVLYEG+PMAL+ EQAGG ASTG F G  GR+++VVP+ IH+RCPII+G P  V  +LS+Y
Sbjct:   11 YPADKKSAKGKLRVLYEGYPMALLTEQAGGVASTGRFRGKAGRIMDVVPENIHDRCPIIMGCPRDVAMILSKY 83          
BLAST of mRNA_H-paniculata_contig43652.11093.1 vs. uniprot
Match: A0A7S3W818_9SPIT (Fructose-bisphosphatase n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3W818_9SPIT)

HSP 1 Score: 99.8 bits (247), Expect = 3.580e-23
Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    1 FPLPLFSRAGKLRVLYEGFPMALIIEQAGGSASTGMFNGSIGRVLEVVPKGIHERCPIILGNPHFVEKVLSEYQ 222
            +P    S  GKLRVLYEGFPMALI EQAGG ASTGM+ GS+ RVLEV+P+ IH+RCPII+G P  V KVL  Y+
Sbjct:  313 YPADKKSVKGKLRVLYEGFPMALITEQAGGLASTGMYKGSVQRVLEVMPESIHDRCPIIMGAPRDVNKVLELYK 386          
BLAST of mRNA_H-paniculata_contig43652.11093.1 vs. uniprot
Match: A0A7S3RE24_9SPIT (Fructose-bisphosphatase n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RE24_9SPIT)

HSP 1 Score: 99.0 bits (245), Expect = 3.830e-23
Identity = 47/74 (63.51%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    1 FPLPLFSRAGKLRVLYEGFPMALIIEQAGGSASTGMFNGSIGRVLEVVPKGIHERCPIILGNPHFVEKVLSEYQ 222
            +P    S  GKLRVLYEGFPMALI+E AGG  STGMFNG I R+L++VP  IH+RCP+ILG+P  VE VL+ Y+
Sbjct:  263 YPADKKSPKGKLRVLYEGFPMALIVETAGGIGSTGMFNGKIQRMLDLVPSNIHDRCPVILGSPRDVEVVLNMYK 336          
BLAST of mRNA_H-paniculata_contig43652.11093.1 vs. uniprot
Match: A0A7S1A2B6_NOCSC (Fructose-bisphosphatase n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1A2B6_NOCSC)

HSP 1 Score: 99.8 bits (247), Expect = 4.200e-23
Identity = 49/73 (67.12%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    1 FPLPLFSRAGKLRVLYEGFPMALIIEQAGGSASTGMFNGSIGRVLEVVPKGIHERCPIILGNPHFVEKVLSEY 219
            +P    S  GKLRVLYEGFPMALI EQAGG ASTGMF G IGR+LEV+P+ IH+RCPII+G+   VE VL  Y
Sbjct:  331 YPADKKSTKGKLRVLYEGFPMALITEQAGGVASTGMFKGKIGRILEVMPEHIHDRCPIIMGSARDVEAVLKLY 403          
BLAST of mRNA_H-paniculata_contig43652.11093.1 vs. uniprot
Match: A0A7S4IKN0_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4IKN0_9EUKA)

HSP 1 Score: 95.1 bits (235), Expect = 4.200e-23
Identity = 47/74 (63.51%), Postives = 55/74 (74.32%), Query Frame = 1
Query:    1 FPLPLFSRAGKLRVLYEGFPMALIIEQAGGSASTGMFNGSIGRVLEVVPKGIHERCPIILGNPHFVEKVLSEYQ 222
            +P    S  GKLRVLYEGFPMALI+E AGG ASTGMF G+I R+L++VP  IHERCP+ILG P  V  VL  Y+
Sbjct:   88 YPADKKSPGGKLRVLYEGFPMALIVEAAGGVASTGMFKGAIHRMLDLVPTDIHERCPVILGCPRDVNIVLGYYK 161          
BLAST of mRNA_H-paniculata_contig43652.11093.1 vs. uniprot
Match: A0A0M0JDT1_9EUKA (Fructose-bisphosphatase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JDT1_9EUKA)

HSP 1 Score: 100 bits (249), Expect = 5.200e-23
Identity = 47/74 (63.51%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    1 FPLPLFSRAGKLRVLYEGFPMALIIEQAGGSASTGMFNGSIGRVLEVVPKGIHERCPIILGNPHFVEKVLSEYQ 222
            +P    S  GKLRVLYEGFPMALI+E AGG ASTGMFNGS+ R+L++VP  IHERCP+ILG+P  V  +L  Y+
Sbjct:  713 YPADKKSTKGKLRVLYEGFPMALIVESAGGIASTGMFNGSVQRMLDLVPTNIHERCPVILGSPRDVNLILGMYK 786          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43652.11093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK80_ECTSI4.400e-3379.73Fructose-bisphosphatase n=1 Tax=Ectocarpus silicul... [more]
A0A836CP10_9STRA1.220e-2773.97Fructose-bisphosphatase n=1 Tax=Tribonema minus Ta... [more]
F0Y4K5_AURAN4.010e-2563.51Fructose-bisphosphatase n=1 Tax=Aureococcus anopha... [more]
A0A7S2XVM0_9STRA1.220e-2460.81Fructose-bisphosphatase n=2 Tax=Fibrocapsa japonic... [more]
F0XYF8_AURAN3.200e-2460.27FBPase_C domain-containing protein (Fragment) n=1 ... [more]
A0A7S3W818_9SPIT3.580e-2366.22Fructose-bisphosphatase n=1 Tax=Strombidinopsis ac... [more]
A0A7S3RE24_9SPIT3.830e-2363.51Fructose-bisphosphatase n=1 Tax=Strombidinopsis ac... [more]
A0A7S1A2B6_NOCSC4.200e-2367.12Fructose-bisphosphatase n=1 Tax=Noctiluca scintill... [more]
A0A7S4IKN0_9EUKA4.200e-2363.51Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A0M0JDT1_9EUKA5.200e-2363.51Fructose-bisphosphatase n=1 Tax=Chrysochromulina t... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43652contigH-paniculata_contig43652:1334..1558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue2.9e-26
Seed eggNOG ortholog2880.D7FK80
KEGG rclassRC00017
KEGG koko:K03841
KEGG ReactionR00762,R04780
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04152,ko04910,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map04152,map04910
KEGG ModuleM00003,M00165,M00167,M00344
Hectar predicted targeting categoryother localisation
EggNOG free text desc.fructose 1,6-bisphosphate 1-phosphatase activity
EggNOG OGsCOG0158@1,KOG1458@2759
Ec32 ortholog descriptioncytosolic fructose-1,6-bisphosphatase
Ec32 orthologEc-17_003090.1
EC3.1.3.11
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons1
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930322.118791-CDS-H-paniculata_contig43652:1333..15581622930322.118791-CDS-H-paniculata_contig43652:1333..1558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43652 1334..1558 -
1691481240.9934762-CDS-H-paniculata_contig43652:1333..15581691481240.9934762-CDS-H-paniculata_contig43652:1333..1558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43652 1334..1558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43652.11093.1prot_H-paniculata_contig43652.11093.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43652 1334..1558 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43652.11093.1

>prot_H-paniculata_contig43652.11093.1 ID=prot_H-paniculata_contig43652.11093.1|Name=mRNA_H-paniculata_contig43652.11093.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
FPLPLFSRAGKLRVLYEGFPMALIIEQAGGSASTGMFNGSIGRVLEVVPK
GIHERCPIILGNPHFVEKVLSEYQ*
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mRNA from alignment at H-paniculata_contig43652:1334..1558-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43652.11093.1 ID=mRNA_H-paniculata_contig43652.11093.1|Name=mRNA_H-paniculata_contig43652.11093.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=225bp|location=Sequence derived from alignment at H-paniculata_contig43652:1334..1558- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCCTCTTCCTCTTTTTTCGCGCGCAGGCAAGCTGCGAGTGTTGTATGA GGGCTTTCCCATGGCCTTGATCATCGAGCAGGCGGGTGGGTCGGCCTCAA CGGGCATGTTCAACGGATCCATCGGGCGAGTGCTGGAGGTCGTGCCCAAG GGAATCCACGAACGCTGTCCGATCATCCTCGGAAATCCCCATTTCGTCGA AAAGGTTCTGTCAGAGTACCAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig43652:1334..1558-

>mRNA_H-paniculata_contig43652.11093.1 ID=mRNA_H-paniculata_contig43652.11093.1|Name=mRNA_H-paniculata_contig43652.11093.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig43652:1334..1558- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCCTCTTCCTCTTTTTTCGCGCGCAGGCAAGCTGCGAGTGTTGTATGA
GGGCTTTCCCATGGCCTTGATCATCGAGCAGGCGGGTGGGTCGGCCTCAA
CGGGCATGTTCAACGGATCCATCGGGCGAGTGCTGGAGGTCGTGCCCAAG
GGAATCCACGAACGCTGTCCGATCATCCTCGGAAATCCCCATTTCGTCGA
AAAGGTTCTGTCAGAGTACCAGTAATTTCCTCTTCCTCTTTTTTCGCGCG
CAGGCAAGCTGCGAGTGTTGTATGAGGGCTTTCCCATGGCCTTGATCATC
GAGCAGGCGGGTGGGTCGGCCTCAACGGGCATGTTCAACGGATCCATCGG
GCGAGTGCTGGAGGTCGTGCCCAAGGGAATCCACGAACGCTGTCCGATCA
TCCTCGGAAATCCCCATTTCGTCGAAAAGGTTCTGTCAGAGTACCAGTAA
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