mRNA_H-paniculata_contig4365.11092.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4365.11092.1 vs. uniprot
Match: D7FU99_ECTSI (Similar to DNA primase large subunit, partial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU99_ECTSI) HSP 1 Score: 338 bits (867), Expect = 5.120e-106 Identity = 224/519 (43.16%), Postives = 278/519 (53.56%), Query Frame = 1
Query: 34 METQTPPSMYTEPPTFDIELEGFVTLPLRRLEIFRLLRAGYWRRRTGTTSSASTAMMEEVNRARSLLFHDNAEGGSPEEIRLRRADIASHFILRLACCGRGATSNGDVGGQRTQLQXXXXXXXXXXXDGRVRDRREWFIRAERDLFETRLQWYLLGEAGSNGGXXXXXXXXXXXXXXXXXSITTIATADSRLEALRLGYGLGWIRPVNKLEDLDCDPSLSRKQNIFQNIGRVDRWQKETDLGRIAPSAHPKDPAGSCYSDSGGS-----------------IFNLGEDA-TEHGGGMVPGVRALHRDHSIVAWRSDSSAVPEKVVTAAAAEKNTSYVGHGCKYYSCPFQKALTLVRSRQVLLRDGMALLALEQVPGAVLEHFETVLRKGLGVTARGLPGVESDERVRDSLREVRRAVDSFISATSALGTATSNNGYNGYRSVVPITRSNLDVVADTHFPLCMRRIVRMLRREHHLKYQARLQLVSFLVNAGMEVGELLAVWREEFPKGMPKEEYARKSN 1536
MET PP +Y +PP FDIELE F TLP+RRLE RLLR G + AS A AR LL H + G P E + +RAD+ASHFIL+LACCG AT G G T+ R RREWF+RAERDLFE RL W+L + GG + A+ RLEALR+ Y L W++PV DC R +K+ + G +H ++ G C S GG G+D EH PG + + R + K + + A K S +G Y SCPF+K L LVRSR+VLLRDG ALL+ +Q+P AV++HFE LR+GL + RGLPGVE+D RV + LR+VR AVDS +S G N RS+ ITR N+D +A+ HFPLCMRR +R+LRREHHLKYQARLQL+SFL NAGMEV E+L +WREEFPKGMP +EYARK N
Sbjct: 1 METCKPPGLYVDPPDFDIELEEFGTLPMRRLEAVRLLREG--QTTPAQVPEASPAQKALTADARLLLLHGH--GDRPSEAKNQRADLASHFILKLACCG--ATGGGVQPG--TEASKRDDSSGRCEEVDRRSSRREWFVRAERDLFEARLHWHL---QQNEGGGSKEGIAGRCNGGASSADLGARASIADRLEALRIFYNLEWLQPVGPAAP-DCS-----------------RMEKQRESGH--EGSHARE--GVCTSSYGGKGCXXXXXXXXXXXXXXXXXXDGDDPFREHSRSYSPGACSRGDASHVTLERQLPPSSERKKLPESVAFKGGSDIG----YLSCPFEKVLPLVRSRRVLLRDGKALLSPDQLPEAVVQHFEGRLREGLAIAERGLPGVEADVRVAEVLRQVRSAVDSLVSGGGRRGLDADN------RSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRN 476
BLAST of mRNA_H-paniculata_contig4365.11092.1 vs. uniprot
Match: A0A7S2DU63_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DU63_9STRA) HSP 1 Score: 142 bits (358), Expect = 1.270e-33 Identity = 87/225 (38.67%), Postives = 124/225 (55.11%), Query Frame = 1
Query: 1018 PFQKALTLVRSRQVLLRDGMALLALEQVPGAVLEHFETVLRKGLGVTARGLPGVESDERVRDSLREVRRAVDSFISATSALG------TATSNNGYNGYRSVVPITRSNLDVVADTHFPLCMRRIVRMLRREHHLKYQARLQLVSFLVNAGMEVGELLAVWREEFPKGMPKEEYARKSNTYEYSLRHLYGLEGKRKAVTPMSCSRIGASGYGSGEGGLAHGCPFA 1674
PF++AL LV R V++R G AL+ +Q+P +E F VL G + ++ + + + ER RE A+G T T ++ S ++ NLD++A HFPLC R + LR++H LKY+AR+QLV FL G+ V E+L +WR EF + M +EY +K YEYS+RHLYGLEGKRK +P SC +I G +GCP+A
Sbjct: 69 PFKQALRLVGQRCVVVRGGYALVPFDQIPALAVERFSNVL--GQSLQSKLIIRLLAKERADTGQREADTCFSPLNELVDAVGSLVRRMTGTDDDETGAASSSEEVSLRNLDLLAPRHFPLCARVTFKKLRQQHRLKYEARMQLVLFLKGVGLPVDEVLQLWRSEFRRVMTPDEYHKKK--YEYSIRHLYGLEGKRKDYSPYSCQQIIQKGPPRNSD-HDYGCPWA 288
BLAST of mRNA_H-paniculata_contig4365.11092.1 vs. uniprot
Match: A0A0S7IPF4_9TELE (DNA primase large subunit (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7IPF4_9TELE) HSP 1 Score: 138 bits (347), Expect = 2.140e-32 Identity = 86/221 (38.91%), Postives = 120/221 (54.30%), Query Frame = 1
Query: 1009 YSCPFQKALTLVRSRQVLLRDGMALLALEQVPGAVLEHFETVLRKGLGVTARGLPGVESDERVRDSLREVRRAVDSFISATSALGTATSNNGYNGYRSVVPITRSNLDVVADTHFPLCMRRIVRMLRREHHLKYQARLQLVSFLVNAGMEVGELLAVWREEFPKGMPKEEYARKSNTYEYSLRHLYGLEGKRKAVTPMSCSRIGASGYGSGEGGLAHGCPF 1671
Y PFQ AL LVR+R+V L++G A + ++ VL F T L K L +TAR LP V SDER++ L + S LG Y+ ++V I+ +D +A FPLCMR++ + LR +HHL++ R+Q FL G+ + + L WR EF +G K E + Y YS+RH++G EGKR TP SC ++ S S G HGCPF
Sbjct: 16 YKVPFQDALDLVRTRKVYLKEGYAYIPQYEIVTIVLNDFRTRLSKALALTARTLPAVHSDERLQPLLNHLSH---------SYLG-----QDYSVQKNVGKISLEQIDSLAGKSFPLCMRQLHQALRDQHHLRHGGRMQYGLFLKGIGLSLEQALQFWRMEFTRG--KVEADKFDKAYAYSIRHMFGKEGKRTDYTPYSCMKVILSNPPSQ--GDYHGCPF 218
BLAST of mRNA_H-paniculata_contig4365.11092.1 vs. uniprot
Match: A0A2I4BH01_9TELE (DNA primase large subunit n=1 Tax=Austrofundulus limnaeus TaxID=52670 RepID=A0A2I4BH01_9TELE) HSP 1 Score: 141 bits (356), Expect = 2.510e-32 Identity = 88/244 (36.07%), Postives = 131/244 (53.69%), Query Frame = 1
Query: 943 EKVVTAAAAEKNTSYVGHGCKYYSCPFQKALTLVRSRQVLLRDGMALLALEQVPGAVLEHFETVLRKGLGVTARGLPGVESDERVRDSLREVRRAVDSFISATSALGTATSNNGYNGYRSVVPITRSNLDVVADTHFPLCMRRIVRMLRREHHLKYQARLQLVSFLVNAGMEVGELLAVWREEFPKGMPKEEYARKSNTYEYSLRHLYGLEGKRKAVTPMSCSRIGASGY-GSGEGGLAHGCPF 1671
EK++ ++ + H +Y PFQ AL LVR+R+V LR+G A + ++ VL F T L K L +TAR LP V+SDER++ L + A ++ Y ++V ++ +D ++ T FPLCMR++ + LR HHL++ R+Q FL G+ + + L WR EF KG K + R Y YS+RH++G EGKR TP SC ++ S G G+ +HGCPF
Sbjct: 171 EKLINSSYGISGATVEEHD--FYKVPFQDALDLVRTRKVYLRNGYAYIPHHEIVTIVLNDFRTRLSKALALTARLLPVVQSDERLQPLLNHLSHA---YV-----------GQDYGIQKNVGKVSLEQIDSLSGTSFPLCMRQLHQSLRENHHLRHGGRMQYGLFLKGIGLTLEQALQFWRMEFTKG--KVDADRFDKAYAYSIRHMFGKEGKRTDYTPYSCMKVILSNQPGPGD---SHGCPF 393
BLAST of mRNA_H-paniculata_contig4365.11092.1 vs. uniprot
Match: A0A3B3QQU2_9TELE (DNA primase large subunit n=2 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3QQU2_9TELE) HSP 1 Score: 141 bits (355), Expect = 3.070e-32 Identity = 90/255 (35.29%), Postives = 132/255 (51.76%), Query Frame = 1
Query: 922 SDSSAVPEKVVTAAAAEKNTSYVGHGCK-----YYSCPFQKALTLVRSRQVLLRDGMALLALEQVPGAVLEHFETVLRKGLGVTARGLPGVESDERVRDSLREVRRAVDSFISATSALGTATSNNGYNGYRSVVPITRSNLDVVADTHFPLCMRRIVRMLRREHHLKYQARLQLVSFLVNAGMEVGELLAVWREEFPKGMPKEEYARKSNTYEYSLRHLYGLEGKRKAVTPMSCSRIGASGYGSGEGGLAHGCPF 1671
+D A+ +K+V ++SY GC +Y PFQ AL LVRSR+V L+ G A + + + VL F T L K L +TAR LP V+SDER++ L + A ++ Y+ +SV ++ +D ++ FP CMR + LR HHL++ R+Q FL G+ + + L WR EF +G K ++ + Y YS+RH++G EGKR TP SC ++ S S G HGCPF
Sbjct: 159 ADKKALMDKLV-------HSSYGSSGCSVEQQDFYKVPFQDALDLVRSRKVFLKAGYAYIPHQDIVTIVLNDFRTRLSKALALTARSLPAVQSDERLQPLLTHLSHA---YV-----------GQDYSIQKSVGKVSLEQIDSLSVRSFPPCMRHLHEALRENHHLRHGGRMQYGLFLKGVGLTLDQALQFWRSEFIRG--KVDHDKFDKAYSYSIRHMFGKEGKRTDYTPYSCVKVILSNAPSQ--GDHHGCPF 388
BLAST of mRNA_H-paniculata_contig4365.11092.1 vs. uniprot
Match: A0A3Q3B631_KRYMA (DNA primase large subunit n=1 Tax=Kryptolebias marmoratus TaxID=37003 RepID=A0A3Q3B631_KRYMA) HSP 1 Score: 141 bits (355), Expect = 3.490e-32 Identity = 87/237 (36.71%), Postives = 126/237 (53.16%), Query Frame = 1
Query: 976 NTSYVGHGCK-----YYSCPFQKALTLVRSRQVLLRDGMALLALEQVPGAVLEHFETVLRKGLGVTARGLPGVESDERVRDSLREVRRAVDSFISATSALGTATSNNGYNGYRSVVPITRSNLDVVADTHFPLCMRRIVRMLRREHHLKYQARLQLVSFLVNAGMEVGELLAVWREEFPKGMPKEEYARKSNTYEYSLRHLYGLEGKRKAVTPMSCSRIGASGYGSGEGGLAHGCPF 1671
++SY G K +Y PFQ AL LVR+R+V L+DG A + + + VL F T L K L +TAR LP V SDER++ L + A ++ Y+ ++V I+ +D ++ FPLCMR++ + LR HHL++ R+Q FL G+ + + L WR EF +G K + + Y YS+RH++G EGKR TP SC ++ S S G HGCPF
Sbjct: 181 SSSYAVSGIKVELEEFYKVPFQDALDLVRTRKVYLKDGFAYIPHQDIVTIVLNDFRTRLSKALALTARSLPAVHSDERLQPLLNHLSHA---YV-----------GQDYSIQKNVGKISLEQIDSLSGKSFPLCMRKLHQALRENHHLRHGGRMQYGLFLKGIGLSLEQALQFWRMEFTRG--KVDADKFDKAYAYSIRHMFGKEGKRTDYTPYSCMKVILSNPPSQ--GDYHGCPF 399
BLAST of mRNA_H-paniculata_contig4365.11092.1 vs. uniprot
Match: A0A0S7IPE9_9TELE (DNA primase large subunit n=17 Tax=Poeciliinae TaxID=586240 RepID=A0A0S7IPE9_9TELE) HSP 1 Score: 140 bits (354), Expect = 4.170e-32 Identity = 96/268 (35.82%), Postives = 141/268 (52.61%), Query Frame = 1
Query: 880 VRALHRDH----SIVAWRSDSSAVPEKVVTAAAAEKNTSYVGHGCKYYSCPFQKALTLVRSRQVLLRDGMALLALEQVPGAVLEHFETVLRKGLGVTARGLPGVESDERVRDSLREVRRAVDSFISATSALGTATSNNGYNGYRSVVPITRSNLDVVADTHFPLCMRRIVRMLRREHHLKYQARLQLVSFLVNAGMEVGELLAVWREEFPKGMPKEEYARKSNTYEYSLRHLYGLEGKRKAVTPMSCSRIGASGYGSGEGGLAHGCPF 1671
++ LH+++ +I A DS + EK+ +++A H Y PFQ AL LVR+R+V L++G A + ++ VL F T L K L +TAR LP V SDER++ L + S LG Y+ ++V I+ +D +A FPLCMR++ + LR +HHL++ R+Q FL G+ + + L WR EF +G K E + Y YS+RH++G EGKR TP SC ++ S S G HGCPF
Sbjct: 139 LKFLHKNNLQYNTISAKEKDS--LREKLAISSSAASGVKLEEHDV--YKVPFQDALDLVRTRKVYLKEGYAYIPQYEIVTIVLNDFRTRLSKALALTARTLPAVHSDERLQPLLNHLSH---------SYLG-----QDYSVQKNVGKISLEQIDSLAGKSFPLCMRQLHQALRDQHHLRHGGRMQYGLFLKGIGLSLEQALQFWRMEFTRG--KVEADKFDKAYAYSIRHMFGKEGKRTDYTPYSCMKVILSNPPSQ--GDYHGCPF 384
BLAST of mRNA_H-paniculata_contig4365.11092.1 vs. uniprot
Match: A0A4W4E925_ELEEL (DNA primase large subunit n=5 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4E925_ELEEL) HSP 1 Score: 140 bits (354), Expect = 4.330e-32 Identity = 94/266 (35.34%), Postives = 140/266 (52.63%), Query Frame = 1
Query: 889 LHRDHSIVAWRSDSSAVPEKVVTAAAAEKNTSYVGHGC-----KYYSCPFQKALTLVRSRQVLLRDGMALLALEQVPGAVLEHFETVLRKGLGVTARGLPGVESDERVRDSLREVRRAVDSFISATSALGTATSNNGYNGYRSVVPITRSNLDVVADTHFPLCMRRIVRMLRREHHLKYQARLQLVSFLVNAGMEVGELLAVWREEFPKGMPKEEYARKSNTYEYSLRHLYGLEGKRKAVTPMSCSRIGASGYGSGEGGLAHGCPF 1671
LHR++ + D+ ++ EK T N+SY G ++Y PFQ AL LVR R+V L+ G A + + + VL F T L K L +TAR LP V+SDER++ L + A ++ Y+ +++ ++ +D ++ T FPLCMR++ + LR +HHL++ R+Q FL G+ + + L WR EF KG E K+ Y YS+RH++G EGKR TP SC ++ S S G HGCPF
Sbjct: 148 LHRNN----LKYDTISIEEKK-TLKDELINSSYGISGATIAEQEFYRVPFQDALDLVRLRKVFLQAGYAYIPHQDIVTIVLNDFRTRLSKALALTARSLPAVQSDERLQPLLNHLSHA---YV-----------GQDYSFQKNIGKVSLEQIDPLSTTSFPLCMRQLHKALREQHHLRHGGRMQYGLFLKGVGLTLEQALQFWRAEFVKGKVDSEKFDKA--YAYSIRHMFGKEGKRTDYTPYSCMKVILSNPPSQ--GDYHGCPF 390
BLAST of mRNA_H-paniculata_contig4365.11092.1 vs. uniprot
Match: A0A8C4G549_9TELE (DNA primase large subunit n=4 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4G549_9TELE) HSP 1 Score: 140 bits (353), Expect = 5.160e-32 Identity = 89/246 (36.18%), Postives = 131/246 (53.25%), Query Frame = 1
Query: 934 AVPEKVVTAAAAEKNTSYVGHGCKYYSCPFQKALTLVRSRQVLLRDGMALLALEQVPGAVLEHFETVLRKGLGVTARGLPGVESDERVRDSLREVRRAVDSFISATSALGTATSNNGYNGYRSVVPITRSNLDVVADTHFPLCMRRIVRMLRREHHLKYQARLQLVSFLVNAGMEVGELLAVWREEFPKGMPKEEYARKSNTYEYSLRHLYGLEGKRKAVTPMSCSRIGASGYGSGEGGLAHGCPF 1671
A+ +K+V+++ A + + +Y PFQ AL LVR+R+V L+ G A + + + VL F T L K L +TAR LP V+SDER++ L S L A Y+ ++V I+ +D ++ FPLCMR++ + LR HHL++ R+Q FL G+ + + L WR EF KG K + + Y YS+RH++G EGKR TP SC ++ S S G HGCPF
Sbjct: 162 ALVDKLVSSSYAVSGATVMEQD--FYKVPFQDALDLVRTRKVFLKGGYAYIPHQDIIAIVLNDFRTRLSKALALTARSLPAVQSDERLQPLL--------------SHLSHAYVGQDYSIQKNVGKISLEQIDPLSTKSFPLCMRQLHKSLRENHHLRHGGRMQYGLFLKGIGLSLEQALQFWRSEFIKG--KVDADKFDKAYAYSVRHMFGKEGKRTDYTPYSCMKVILSNPPSQ--GDYHGCPF 387
BLAST of mRNA_H-paniculata_contig4365.11092.1 vs. uniprot
Match: A0A8C1AUS1_CYPCA (DNA primase large subunit n=3 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1AUS1_CYPCA) HSP 1 Score: 139 bits (351), Expect = 5.490e-32 Identity = 89/261 (34.10%), Postives = 135/261 (51.72%), Query Frame = 1
Query: 889 LHRDHSIVAWRSDSSAVPEKVVTAAAAEKNTSYVGHGCKYYSCPFQKALTLVRSRQVLLRDGMALLALEQVPGAVLEHFETVLRKGLGVTARGLPGVESDERVRDSLREVRRAVDSFISATSALGTATSNNGYNGYRSVVPITRSNLDVVADTHFPLCMRRIVRMLRREHHLKYQARLQLVSFLVNAGMEVGELLAVWREEFPKGMPKEEYARKSNTYEYSLRHLYGLEGKRKAVTPMSCSRIGASGYGSGEGGLAHGCPF 1671
LH+++ + + ++ ++ +K++ ++ T H Y PFQ AL LVR+R+V L G A + ++ VL F T L K L +TAR LP V+SDER++ L S L A Y+ +++ I+ +D ++ FPLCMR + + LR HHL++ R+Q FL G+ + + L WR EF KG K + + Y YS+RH++G EGKR TP SC ++ S S G HGCPF
Sbjct: 137 LHKNN--LKYETEKKSLQDKLIASSYGLSGTKVEEHDV--YKVPFQDALDLVRTRKVYLLAGNAYIPHHEIVTIVLNDFRTRLSKALAMTARSLPAVQSDERLQPLL--------------SHLSHAYVGQDYSIQKNIGKISLEQIDALSGKSFPLCMRHLHKALRENHHLRHGGRMQYGLFLKGIGLSLEQALQFWRSEFVKG--KVDADKFDKAYAYSVRHMFGKEGKRTDYTPYSCMKVILSNPPSQ--GDYHGCPF 375 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4365.11092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4365.11092.1 >prot_H-paniculata_contig4365.11092.1 ID=prot_H-paniculata_contig4365.11092.1|Name=mRNA_H-paniculata_contig4365.11092.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=637bp SICLLNIQGVEMETQTPPSMYTEPPTFDIELEGFVTLPLRRLEIFRLLRAback to top mRNA from alignment at H-paniculata_contig4365:2935..14201- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4365.11092.1 ID=mRNA_H-paniculata_contig4365.11092.1|Name=mRNA_H-paniculata_contig4365.11092.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11267bp|location=Sequence derived from alignment at H-paniculata_contig4365:2935..14201- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4365:2935..14201- >mRNA_H-paniculata_contig4365.11092.1 ID=mRNA_H-paniculata_contig4365.11092.1|Name=mRNA_H-paniculata_contig4365.11092.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3822bp|location=Sequence derived from alignment at H-paniculata_contig4365:2935..14201- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |