mRNA_H-paniculata_contig1173.1109.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1173.1109.1
Unique NamemRNA_H-paniculata_contig1173.1109.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1173.1109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1173contigH-paniculata_contig1173:11458..12723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928882.4072397-CDS-H-paniculata_contig1173:11457..116461622928882.4072397-CDS-H-paniculata_contig1173:11457..11646Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1173 11458..11646 -
1691480655.486851-CDS-H-paniculata_contig1173:11457..116461691480655.486851-CDS-H-paniculata_contig1173:11457..11646Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1173 11458..11646 -
1622928882.4223526-CDS-H-paniculata_contig1173:12690..127231622928882.4223526-CDS-H-paniculata_contig1173:12690..12723Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1173 12691..12723 -
1691480655.4969792-CDS-H-paniculata_contig1173:12690..127231691480655.4969792-CDS-H-paniculata_contig1173:12690..12723Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1173 12691..12723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1173.1109.1prot_H-paniculata_contig1173.1109.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1173 11458..12723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1173.1109.1

>prot_H-paniculata_contig1173.1109.1 ID=prot_H-paniculata_contig1173.1109.1|Name=mRNA_H-paniculata_contig1173.1109.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
QGAKCNARRIENDLPHVGVGCDAERKPPRLAAVLGSENLKSGNTGTSVAG
SSEKEQSSRLPTRADSCRHRYRQ*
back to top

mRNA from alignment at H-paniculata_contig1173:11458..12723-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1173.1109.1 ID=mRNA_H-paniculata_contig1173.1109.1|Name=mRNA_H-paniculata_contig1173.1109.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1266bp|location=Sequence derived from alignment at H-paniculata_contig1173:11458..12723- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGAGCGAAGTGTAATGCGAGGAGGATTGAGGTGTATTCTCTAGGTTG
AGAGTGCAATGTCGTTGAAAGTTAGACGCCGAGCGAGATGGTGTGAGACG
ACAATTGCCGCGAAATGTCGGACGTTGGCTGTACACCACCTCCCCTGTAA
AATGTGTGCACGCTGTTGAGAGAGACAGTCGCTCTCGAGCTAGGAATGTA
GCAACGGGCCTCAAGAACGCCATGTGACCTCCTCATCATGAGCTCTCTAT
TGGAAAAGGTTTCATGGAATTTCATCCTACGAGAAAACAATTAATGACTC
ACTTGAAGTTGAACAAAATATGAATTTTTGGTTCCGCACATCATCTGCTG
ATGATACACGCAGATCTTGGCAGATCTTGGCGAAGAACGCAGGGAGTTAA
TAGTGATAAGTTGACAGGGCGCGAAACATAGCGAGCGTGTAGATTTGTTT
AATGTGGCGACGGGCGGATTTCAAGCTAGACGACCTTCTCCCTCCTTCGG
TCGCATACTGTCCCGAACGGCAGGATTCGAAGACCTCTTTCTTTTCTGAT
GGCGATGCCCGTCGCCAGCAACAGCTACGCGTTATTAACCCGACAGCAGT
ATATTCCCGACCTTCTACGACTACACAAATCGTGGCATCGGTCGCTACGA
ACCGAACGTAATATCGCAGATGAGAACATATGTCGCATGCAGCAGTTACT
ACGATGAGATGAATGTTGCGTGCAACACTGAGACTGACAGCGTCAGATAT
CAGTGCTACCGTTGTCGTGCAGTGAGGCAAAATACTTTCAACATCACAAA
ATTACCACGTCAATTTGAAGTGACTCGACCGCGTAAAACGTGCGGAGCAT
GAAATTTTTTGCATGCTTCAACGATGGCAATGTGATGGTTGAAAATGAAG
CAAGTAGAAAGGCTAGCATACAAACGCACTAACTTCCCGAGGGTGTTTAC
GTTTCCTCCGTGTTCCAATGTCCGAGCAGAGATGCGCACGTTGACTGAAC
TCCGCGATGCACGACTTCTGACTACGAACCATTTCGGCCCGCGCCTTCTT
ACACACTTCGCTATTTTTCGTGTTTAGAACGACCTGCCCCACGTGGGTGT
AGGGTGTGACGCGGAGAGGAAGCCACCGAGATTGGCGGCGGTATTGGGCA
GTGAGAATTTGAAGTCTGGGAATACTGGTACGTCTGTCGCGGGGAGTTCC
GAAAAAGAACAGTCCTCGCGCCTGCCAACGCGTGCCGACAGCTGCCGACA
TCGATATCGACAGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1173:11458..12723-

>mRNA_H-paniculata_contig1173.1109.1 ID=mRNA_H-paniculata_contig1173.1109.1|Name=mRNA_H-paniculata_contig1173.1109.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig1173:11458..12723- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGAGCGAAGTGTAATGCGAGGAGGATTGAGCAGGGAGCGAAGTGTAA
TGCGAGGAGGATTGAGAACGACCTGCCCCACGTGGGTGTAGGGTGTGACG
CGGAGAGGAAGCCACCGAGATTGGCGGCGGTATTGGGCAGTGAGAATTTG
AAGTCTGGGAATACTGGTACGTCTGTCGCGGGGAGTTCCGAAAAAGAACA
GTCCTCGCGCCTGCCAACGCGTGCCGACAGCTGCCGACATCGATATCGAC
AGTGAAACGACCTGCCCCACGTGGGTGTAGGGTGTGACGCGGAGAGGAAG
CCACCGAGATTGGCGGCGGTATTGGGCAGTGAGAATTTGAAGTCTGGGAA
TACTGGTACGTCTGTCGCGGGGAGTTCCGAAAAAGAACAGTCCTCGCGCC
TGCCAACGCGTGCCGACAGCTGCCGACATCGATATCGACAGTGA
back to top