mRNA_H-paniculata_contig43586.11081.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43586.11081.1
Unique NamemRNA_H-paniculata_contig43586.11081.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig43586.11081.1 vs. uniprot
Match: A0A5D6YB57_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB57_9STRA)

HSP 1 Score: 257 bits (657), Expect = 2.520e-78
Identity = 163/426 (38.26%), Postives = 233/426 (54.69%), Query Frame = 1
Query:    4 EEEWGALVKNGTWESEDLGRLSAGRKAIRTKWIFKRKLKENGSMARYRVRLVAQGFSQVGGEDFFETSPPVGRMSTLRTVFSPAAEHDFELEGMDVDPAYLNSPEEEELFVKLSPEFSPFSRDIPFVRRLCK---SLYGLKQSGRNWNNTLDDFLVGVGLERSITDSCLYFSRDDGEETNLLVAVYVDDLVIA-GRREKVDEFKHNTSQRFRMKDLGSLSRVLGIDVRHDRPNGTITISQGSYIRASADKPSEQK------------SLGAVLSDIGAQVQESSRGRSGNSTEYRGMVGSLIYASTGTRPDVAYAVRRAARRMEDPCQEYFSTCKRIFRSLSTVPDFGIKVGGKSNGHGLEGFVDADWAEDIEDRKSTTGYVFKLN---VTW----------SSTEAEYVAAGEAGKETVYLRELL 1194
            E E+ +L KN TWE   L R   GRKAI +KW+FK K    G + RY+ RLVA+GF Q  G DF ET  PV + +++R + S AA++   L  MDV  A+LN   EEE+++K    F     D  +   +CK   +LYGLKQS R WN T+D+F+  +G  +  TD C+Y  RDD  +  + V +YVDDL++A    + +   K   S+RF M DLG L   LG++V  D  +G +++ Q  ++ +   K   Q              L   + + G +  ++ +G       YR  VG+++Y   GTRPD+A AV   ++   DPC  ++   KR+ R L   P  GI+  G  +G  L G+ DADWA DIE R+ST+GYVF LN   +TW          SSTEAEY+A  EA +E V+L+  +
Sbjct:   14 ESEFESLCKNKTWELVPLPR---GRKAISSKWVFKVKETVEGLIERYKARLVAKGFLQKYGVDFEETFAPVAKFASIRIILSIAAQYKLVLHQMDVKTAFLNGLLEEEIYMKQPNGFV----DAKYPDHVCKLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCETDHCVYVKRDD--KAMIFVVLYVDDLILACNDTDLLAATKRALSERFEMSDLGELKYCLGMEVERDDKSGDVSMRQTKFLHSVLAKFGMQDCKPVKTPQDPGLKLTKAMCEGGCKHDDTMQG-----VPYRSAVGAVMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVLRYLQATPTHGIRFAGSGDGE-LIGYSDADWAGDIETRRSTSGYVFVLNGGCITWRSKKQRTVALSSTEAEYMALSEATQEAVWLKAFM 424          
BLAST of mRNA_H-paniculata_contig43586.11081.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT)

HSP 1 Score: 257 bits (657), Expect = 1.270e-75
Identity = 155/417 (37.17%), Postives = 245/417 (58.75%), Query Frame = 1
Query:    1 MEEEWGALVKNGTWESEDLGRLSAGRKAIRTKWIFKRKLKENGSMARYRVRLVAQGFSQVGGEDFFETSPPVGRMSTLRTVFSPAAEHDFELEGMDVDPAYLNSPEEEELFVKLSPEFSPFSRDIPFVRRLCKSLYGLKQSGRNWNNTLDDFLVGVGLERSITDSCLYFSRDDGEETNLLVAVYVDDLVIAGRRE-KVDEFKHNTSQRFRMKDLGSLSRVLGIDVRHDRPNGTITISQGSYIRASADKPSEQKSLGAVLS-DIGAQVQESSR-GRSGNSTEYRGMVGSLIYASTGTRPDVAYAVRRAARRMEDPCQEYFSTCKRIFRSLSTVPDFGIKVGGKSNGHGLEGFVDADWAEDIEDRKSTTGYVFKLN---VTW----------SSTEAEYVAAGEAGKETVYLRELLGSI 1203
            ME+E  +L  N  W   +L  L   RKA+ +KW+F+ K   +G++  ++ RLVAQGFSQ  G+D+ ET  PV R  ++RTV + AA+H  +L  MDV  A+LN   +EE+++K +  F    ++   V RL +S+YGLKQS R WN+ LD  L  +G  ++  D C+Y   + GE    ++AVYVDD+++AG+ + K++E K   +++F+MKD+G L   LG+ V     +  I I Q +Y ++  ++   + S  A    + G ++++++   +  +   Y+  VG L+Y ST TRPD+AYAV   AR   DP +E++   KRI R L+   D G+   G        G+ DADWA D++DRKST+GYVF+++   ++W          S+ EAEY+A   A +E V+L++LL  +
Sbjct:    1 MEKEMESLKTNEVW---NLVELPENRKAVGSKWVFRVKTDADGTVETHKARLVAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQTEGFIEKGKEH-LVCRLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYVKEEGGEI--FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIPKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMALASATQEAVWLQQLLSDL 411          
BLAST of mRNA_H-paniculata_contig43586.11081.1 vs. uniprot
Match: A0A2Z7AL20_9LAMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AL20_9LAMI)

HSP 1 Score: 247 bits (630), Expect = 1.980e-74
Identity = 163/420 (38.81%), Postives = 237/420 (56.43%), Query Frame = 1
Query:    1 MEEEWGALVKNGTWESEDLGRLSAGRKAIRTKWIFKRKLKENGSMARYRVRLVAQGFSQVGGEDFFETSPPVGRMSTLRTVFSPAAEHDFELEGMDVDPAYLNSPEEEELFVKLSPEFSPFSRDIPFVRRLCKSLYGLKQSGRNWNNTLDDFLVGVGLERSITDSCLYFSRDDGEETNLLVAVYVDDLVIAG-RREKVDEFKHNTSQRFRMKDLGSLSRVLGIDVRHDRPNGTITISQGSYIRASADKPSEQKSLGAVLSDIGAQVQESSRGRSGNSTE--------YRGMVGSLIYASTGTRPDVAYAVRRAARRMEDPCQEYFSTCKRIFRSLSTVPDFGIKVGGKSNGHGLEGFVDADWAEDIEDRKSTTGYVFKLN---VTW----------SSTEAEYVAAGEAGKETVYLRELL 1194
            M+EE  AL +N TW   DL  L  GRKAI  +W++K K   N  + RYR RLV +G++Q  G DF E    V R++T+R V +  A  D  LE +DV  A+L+   EEE+++ L PE    +     V RL KSLYGLKQ+ R W    D +++ +G  R   D C YF R  G +  +L+ +YVDD+++AG  +++V E K   ++ F MKDLG  +++LG+ V  DR N  I +SQ +Y++    + + Q S   + + +    + SS     N  E        Y   VGSL++A   TRPD+A AV   +R M +P +E++ST KRI R +    +  +  GG      L G+VD+D+A D + RKSTTGYVF L    V+W          S+TEAEY+AA +A KET++++ LL
Sbjct:    1 MQEELEALDRNKTW---DLVTLPRGRKAIGNRWVYKIKRDGNNQVERYRARLVVKGYAQKEGIDFNEIFSLVVRLNTVRVVLALCAVFDLHLEQLDVKTAFLHGDLEEEIYM-LQPEGFAETGKENLVCRLKKSLYGLKQAPRCWYKRFDSYIMSLGYNRLSADPCTYFKRSGGNDYIILL-LYVDDMLVAGPNKDRVQELKAQLAREFDMKDLGPANKILGMQVHRDRSNRKIWLSQTNYLQKFLHRFNMQDSK-PISTPLPVNFKLSSDMCPSNEAERMEMSRIPYASAVGSLMFAMICTRPDIAQAVGAVSRYMANPGREHWSTVKRILRYIKGTSNAALCFGGSYLT--LRGYVDSDYAGDPDKRKSTTGYVFTLAGGAVSWVSKLQTVVALSTTEAEYMAATQACKETIWIQRLL 412          
BLAST of mRNA_H-paniculata_contig43586.11081.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 247 bits (630), Expect = 4.840e-74
Identity = 156/417 (37.41%), Postives = 227/417 (54.44%), Query Frame = 1
Query:   25 VKNGTWESEDLGRLSAGRKAIRTKWIFKRKLKENGSMARYRVRLVAQGFSQVGGEDFFETSPPVGRMSTLRTVFSPAAEHDFELEGMDVDPAYLNSPEEEELFVKLSPEFSPF-SRDIPFVRRLCKSLYGLKQSGRNWNNTLDDFLVGVGLERSITDSCLYFSRDDGEETNLLVAVYVDDLVIAGR-REKVDEFKHNTSQRFRMKDLGSLSRVLGIDVRHDRPNGTITISQGSYI-------RASADKPSEQKSLGAVLSDIGAQVQESSRGRSGNSTEYRGMVGSLIYASTGTRPDVAYAVRRAARRMEDPCQEYFSTCKRIFRSLSTVPDFGIKVGGKSNGH-GLEGFVDADWAEDIEDRKSTTGYVFKLN-------VTW----------SSTEAEYVAAGEAGKETVYLRELL 1194
            +KNGTWE   L  L  G + I + W+   K  +NG + R + R +A+G+SQ  G D+  T  PV  ++T+R V + A   D EL+ MDV+PAYL S  EE+++VK  P +  + S     V RL KSLYGLKQSGRNW+  +D +  G G   S  D CLY       E  L++ +YVDDL+I    RE V +FKH  S+ F MKDL  L  +LG+ ++ DR    + ISQ +YI       R +  KP      G +    G  V+  +        EY  +VGSL+YA+  TRPD+A+AV+   + ++   +E++   KR+ R L    + G+K  G S G   L G+ DAD+A D ++R+ST+GY F L+       + W          SS E+E ++A  A +  +Y+R+LL
Sbjct:    1 MKNGTWE---LTPLPKGERCISSGWVETDKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKMDGKDVKPDN--------EYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTREVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGYAFTLSHGEIVNTIDWRAKQQEVVALSSAESELISACSATQSALYIRQLL 405          
BLAST of mRNA_H-paniculata_contig43586.11081.1 vs. uniprot
Match: H3H4L3_PHYRM (Uncharacterized protein n=5 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H4L3_PHYRM)

HSP 1 Score: 255 bits (652), Expect = 2.370e-72
Identity = 155/419 (36.99%), Postives = 243/419 (58.00%), Query Frame = 1
Query:   19 ALVKNGTWESEDLGRLSAGRKAIRTKWIFKRKLKENGSMARYRVRLVAQGFSQVGGEDFFETSPPVGRMSTLRTVFSPAAEHDFELEGMDVDPAYLNSPEEEELFVKLSPEFSPFSRDIP-FVRRLCKSLYGLKQSGRNWNNTLDDFLVGVGLERSITDSCLYFSRDDGEETNLLVAVYVDDLVIAGRREKV-DEFKHNTSQRFRMKDLGSLSRVLGIDVRHDRPNGTITISQGSYIRASADKPSEQKS------------LGAVLSDIGAQVQESSRGRSGNSTEYRGMVGSLIYASTGTRPDVAYAVRRAARRMEDPCQEYFSTCKRIFRSLSTVPDFGIKVGGKSNGHGLEGFVDADWAEDIEDRKSTTGYVFKLN---VTW----------SSTEAEYVAAGEAGKETVYLRELL 1194
            +L+KN TW   D+  L  GRKAI  +W+F+ K  + G + R++ RLVA+GFSQ  G D+ ET  PV + +++R V S AA++  +L  MDV  A+LN   +E++++     +     D P  V +L +SLYGLKQS R WN T+DDF++ +G ++  +D C+Y  RD G++  + VA+YVDDLV+A   +++ +  KH  S+RF M DLG L   LG+++++D  +G +T+ Q  ++++   K   Q S            L   + + G Q +++ +     +  YR  VG+L+Y    TRPD+A AV   ++   DPC  ++   KR+ R L   P  G++   + +  G+ G+ DADWA DIE R+ST+GY F +N   ++W          SSTEAEY+A  EA +E V+L+  L
Sbjct:  681 SLLKNDTW---DVVPLPKGRKAIGCRWVFRVKENQAGEVERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD-GQDM-IFVALYVDDLVLASSSDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKNMCEGGCQHEDTMK-----NVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFS-REDSVGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEVVWLKVFL 1086          
BLAST of mRNA_H-paniculata_contig43586.11081.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 248 bits (632), Expect = 2.680e-72
Identity = 153/415 (36.87%), Postives = 237/415 (57.11%), Query Frame = 1
Query:    1 MEEEWGALVKNGTWESEDLGRLSAGRKAIRTKWIFKRKLKENGSMARYRVRLVAQGFSQVGGEDFFETSPPVGRMSTLRTVFSPAAEHDFELEGMDVDPAYLNSPEEEELFVKLSPEFSPFSRDIPFVRRLCKSLYGLKQSGRNWNNTLDDFLVGVGLERSITDSCLYFSRDDGEETNLLVAVYVDDLVIAGRR-EKVDEFKHNTSQRFRMKDLGSLSRVLGIDVRHDRPNGTITISQGSYIRASADKPSEQKSLGAVLSDIGAQ---VQESSRGRSGNSTEYRGMVGSLIYASTGTRPDVAYAVRRAARRMEDPCQEYFSTCKRIFRSLSTVPDFGIKVGGKSNGHGLEGFVDADWAEDIEDRKSTTGYVFKLN---VTW----------SSTEAEYVAAGEAGKETVYLRELL 1194
            M++E  +L ++  WE   L  L   RKA+  KW+FK K   +GS+ R++ RLVAQGFSQ  G D+ ET  PV R  ++RTV + + +   +L  MDV  A+LN   E+E+++K  PE            +L KSLYGLKQS R WN+ LD+ L  +G  ++ +D C+Y   +DG     +VA++VDD+++AG+  EK+ + K + ++RF++KD+G L  +LG+ V  +  +  + I Q +Y  AS  K    ++   V + +      V         N  E++  VGSL+Y S+ TRPD+ +AV   A+   +P  E+++  KRIFR L    ++G+     +N   + GF DADWA D+ DRKST+GY F++N   V+W          S+  AEYVA   A +E +++R+LL
Sbjct:  165 MQQEMDSLQEHDVWE---LTELPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFESIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMK-QPEGFEVKGKEHLACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGNI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYT-ASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAAAEYVALSAAAQEALWMRQLL 569          
BLAST of mRNA_H-paniculata_contig43586.11081.1 vs. uniprot
Match: A0A6S7JEY7_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JEY7_PARCT)

HSP 1 Score: 247 bits (631), Expect = 2.770e-72
Identity = 151/417 (36.21%), Postives = 240/417 (57.55%), Query Frame = 1
Query:    1 MEEEWGALVKNGTWESEDLGRLSAGRKAIRTKWIFKRKLKENGSMARYRVRLVAQGFSQVGGEDFFETSPPVGRMSTLRTVFSPAAEHDFELEGMDVDPAYLNSPEEEELFVKLSPEFSPFSRDIPFVRRLCKSLYGLKQSGRNWNNTLDDFLVGVGLERSITDSCLYFSRDDGEETNLLVAVYVDDLVIAGRRE-KVDEFKHNTSQRFRMKDLGSLSRVLGIDVRHDRPNGTITISQGSYIRASADKPSEQKSLGAVLS-DIGAQVQESSR-GRSGNSTEYRGMVGSLIYASTGTRPDVAYAVRRAARRMEDPCQEYFSTCKRIFRSLSTVPDFGIKVGGKSNGHGLEGFVDADWAEDIEDRKSTTGYVFKLN---VTW----------SSTEAEYVAAGEAGKETVYLRELLGSI 1203
            ME+E  +L  N  W   +L  L   RKA+ +KW+F+ K   +G++  ++ RLVAQGFSQ  G+D+ ET  PV R  ++RTV + AA+H  +L  MDV  A+LN   +EE+++K    F    ++   V RL +S+ GLKQS R WN+ LD  L  +G  ++  D C+Y   + GE    ++AVYVDD+++AG+ + K++E K   +++F+MKD+G     LG+ V     +  I I Q +Y ++  ++   + S  A    + G ++++++   +  +   Y+  VG L+Y ST TRPD+AYAV   AR    P +E++   KRI R L+   D G+   G        G+ DADWA D++DRKST+GYVF+++   ++W          S+ EAEY+    A +E V+L++LL  +
Sbjct:  149 MEKEMESLKTNEVW---NLVELPENRKAVGSKWVFRVKTDADGTVETHKARLVAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQPEGFIDKGKEH-LVCRLRRSICGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYVKEEGGEI--FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQRHYFLGVKVIQKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSAHPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMTLASATQEAVWLQQLLSDL 559          
BLAST of mRNA_H-paniculata_contig43586.11081.1 vs. uniprot
Match: A0A7N2MM16_QUELO (Uncharacterized protein n=4 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2MM16_QUELO)

HSP 1 Score: 255 bits (651), Expect = 5.430e-72
Identity = 161/417 (38.61%), Postives = 233/417 (55.88%), Query Frame = 1
Query:    1 MEEEWGALVKNGTWESEDLGRLSAGRKAIRTKWIFKRKLKENGSMARYRVRLVAQGFSQVGGEDFFETSPPVGRMSTLRTVFSPAAEHDFELEGMDVDPAYLNSPEEEELFVKLSPEFSPFSRDIPFVRRLCKSLYGLKQSGRNWNNTLDDFLVGVGLERSITDSCLYFSRDDGEETNLLVAVYVDDLVIAG-RREKVDEFKHNTSQRFRMKDLGSLSRVLGIDVRHDRPNGTITISQGSYIRASADK--PSEQKSLGAVLSDIGAQVQESSRGRSGNSTEYRGMVGSLIYASTGTRPDVAYAVRRAARRMEDPCQEYFSTCKRIFRSLSTVPDFGIKVGGKSNGHGLEGFVDADWAEDIEDRKSTTGYVFKLN---VTWSS----------TEAEYVAAGEAGKETVYLRELLGSI 1203
            M+EE  ++ KN TWE  D   L  GR  I  KWI+K K  E+GS+ +++ RLVA+G+SQ  G DF ET  PV RM T+RT  + AA+ + E+  +DV  A+LN   EEE++V+    +    ++   V RLCK+LYGLKQ+ R WN+ +D +    G +RSI +  LY  R+ G    L++ +YVDDL+  G  R+ V++FK    + F M DLG +   LG  VR     G + I Q  YI     K   +  K +   +S    ++Q+       ++  YR +VGSLIY  T TRPD+ ++V   +R M  P + +++  KR+ R L      GI    K NG+ L GF D+DWA  ++DRKST+GY+F L    + WSS           EAEY+AA +A  E ++LR LL  +
Sbjct:  872 MDEEIASIEKNQTWELVD---LPNGRDVIGLKWIYKTKYNEDGSIQKHKARLVAKGYSQQPGVDFHETFAPVVRMETIRTFLALAAQMELEVFQLDVKSAFLNGDLEEEVYVEQPKGYMKKGKEDK-VYRLCKALYGLKQAPRAWNSKIDGYFRQNGFQRSICEPSLYVKRE-GTRDFLVICLYVDDLIYMGTNRKMVEDFKKAMMKEFEMTDLGLMKYFLGFQVRQS--TGEVFICQEKYIEDLLKKFHMAACKPVSTPMSS-NEKLQQEDAAEKADAKTYRSLVGSLIYL-TNTRPDIVHSVSLISRFMNQPSKLHYAAAKRVLRYLQGTKKQGILYK-KENGNNLVGFTDSDWAGSLDDRKSTSGYIFCLGSNVIAWSSKKQKTIALSSAEAEYIAATDAACEAIWLRRLLSDL 1278          
BLAST of mRNA_H-paniculata_contig43586.11081.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 247 bits (630), Expect = 1.470e-71
Identity = 155/415 (37.35%), Postives = 228/415 (54.94%), Query Frame = 1
Query:   10 EWGALVKNGTWESEDLGRLSAGRKAIRTKWIFKRKLKENGSMARYRVRLVAQGFSQVGGEDFFETSPPVGRMSTLRTVFSPAAEHDFELEGMDVDPAYLNSPEEEELFVKLSPEFSPFSRDI-PFVRRLCKSLYGLKQSGRNWNNTLDDFLVGVGLERSITDSCLYFSRDDGEETNLLVAVYVDDLVIAGR-REKVDEFKHNTSQRFRMKDLGSLSRVLGIDVRHDRPNGTITISQGSYIRASADKPSEQKSLGAVLSDIGAQVQESSRGRSGNSTEYRGMVGSLIYASTGTRPDVAYAVRRAARRMEDPCQEYFSTCKRIFRSLSTVPDFGIKVGGKSNGH-GLEGFVDADWAEDIEDRKSTTGYVFKLN-------VTW----------SSTEAEYVAAGEAGKETVYLRELL 1194
            E+ A +KNGTWE   L  L  G + I + W+   K  + G + R + R +A+G+SQ  G D+  T  PV  M+T+R V + A   D EL+ MDVD AYL S  EE++++K  P +  +  +    V RL KSLYGLKQSGRNW+  +D +  G GL  S  D CLY       E  L++ +YVDDL+I    R   D+FK + S+ F MKDL  L  +LG+ ++ +R N T+ ISQ  YI    +K        +VL+ +   + +          EY  +VGSL+YA+  TRPD+A+AV+   + ++   +E++   KR+ R L    D G+K  G S G   L G+ DAD+A D ++R+ST+GY F L+       + W          SS E+E ++A  A +  VY+R+LL
Sbjct:  216 EYQAHMKNGTWE---LTPLPKGERCISSGWVETDKRDQKGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFG-MADCKSVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNKEHWIAAKRVLRYLKGTRDVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGYTFTLSHGDDVNTIDWKAKQQDVVALSSAESELISACSATQNAVYIRQLL 625          
BLAST of mRNA_H-paniculata_contig43586.11081.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 253 bits (646), Expect = 2.090e-71
Identity = 154/417 (36.93%), Postives = 241/417 (57.79%), Query Frame = 1
Query:    1 MEEEWGALVKNGTWESEDLGRLSAGRKAIRTKWIFKRKLKENGSMARYRVRLVAQGFSQVGGEDFFETSPPVGRMSTLRTVFSPAAEHDFELEGMDVDPAYLNSPEEEELFVKLSPEFSPFSRDIPFVRRLCKSLYGLKQSGRNWNNTLDDFLVGVGLERSITDSCLYFSRDDGEETNLLVAVYVDDLVIAGRR-EKVDEFKHNTSQRFRMKDLGSLSRVLGIDVRHDRPNGTITISQGSYIRASADKPSEQKSLGA-----VLSDIGAQVQESSRGRSGNSTEYRGMVGSLIYASTGTRPDVAYAVRRAARRMEDPCQEYFSTCKRIFRSLSTVPDFGIKVGGKSNGHGLEGFVDADWAEDIEDRKSTTGYVFKLN---VTW----------SSTEAEYVAAGEAGKETVYLRELL 1194
            M++E  +L ++  WE   L  L   RKA+  KW+FK K   +GS+ R++ RLVAQGFSQ  G D+ ET  PV R   +RTV + + +   +L  MDV  A+LN   E+E+++K  PE          V +L KSLYGLKQS R WN+ LD+ L  +G  ++ +D C+Y   +DG+    +VA++VDD+++AG+  EK+ + K + ++RF++KD+G L  +LG+ V  +  +  + I Q +Y  +   K   +          + S + + +++S      N  EY+  VGSL+Y S+ TRPD+ +AV   A+   +P  E+++  KRIFR L    ++G+     +N   + GF DADWA D+ DRKST+GY F++N   V+W          S+ EAEYVA   A +E +++R+LL
Sbjct:  779 MQQEMDSLQEHDVWE---LTELPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFEKIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMK-QPEGFEVKGKEHLVCKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGDI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAIEDSELF---NKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLL 1183          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43586.11081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5D6YB57_9STRA2.520e-7838.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9KES8_PARCT1.270e-7537.17Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A2Z7AL20_9LAMI1.980e-7438.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7TCB8_9STRA4.840e-7437.41Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
H3H4L3_PHYRM2.370e-7236.99Uncharacterized protein n=5 Tax=Phytophthora ramor... [more]
A0A7D9HZ03_PARCT2.680e-7236.87Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7JEY7_PARCT2.770e-7236.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7N2MM16_QUELO5.430e-7238.61Uncharacterized protein n=4 Tax=Quercus lobata Tax... [more]
W7TJ26_9STRA1.470e-7137.35Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A6S7HEL0_PARCT2.090e-7136.93Retrovirus-related Pol poly from transposon TNT 1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43586contigH-paniculata_contig43586:19..1341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score259.6
Seed ortholog evalue2.4e-66
Seed eggNOG ortholog164328.Phyra85518
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs3QH4V@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons3
Model size1203
Cds size1203
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43586.11081.1prot_H-paniculata_contig43586.11081.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43586 19..1341 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930319.9948745-CDS-H-paniculata_contig43586:18..1071622930319.9948745-CDS-H-paniculata_contig43586:18..107Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43586 19..107 -
1691481240.1049628-CDS-H-paniculata_contig43586:18..1071691481240.1049628-CDS-H-paniculata_contig43586:18..107Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43586 19..107 -
1622930320.0124433-CDS-H-paniculata_contig43586:146..5311622930320.0124433-CDS-H-paniculata_contig43586:146..531Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43586 147..531 -
1691481240.1147594-CDS-H-paniculata_contig43586:146..5311691481240.1147594-CDS-H-paniculata_contig43586:146..531Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43586 147..531 -
1622930320.0319796-CDS-H-paniculata_contig43586:612..13411622930320.0319796-CDS-H-paniculata_contig43586:612..1341Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43586 613..1341 -
1691481240.1275458-CDS-H-paniculata_contig43586:612..13411691481240.1275458-CDS-H-paniculata_contig43586:612..1341Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43586 613..1341 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43586.11081.1

>prot_H-paniculata_contig43586.11081.1 ID=prot_H-paniculata_contig43586.11081.1|Name=mRNA_H-paniculata_contig43586.11081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=401bp
MEEEWGALVKNGTWESEDLGRLSAGRKAIRTKWIFKRKLKENGSMARYRV
RLVAQGFSQVGGEDFFETSPPVGRMSTLRTVFSPAAEHDFELEGMDVDPA
YLNSPEEEELFVKLSPEFSPFSRDIPFVRRLCKSLYGLKQSGRNWNNTLD
DFLVGVGLERSITDSCLYFSRDDGEETNLLVAVYVDDLVIAGRREKVDEF
KHNTSQRFRMKDLGSLSRVLGIDVRHDRPNGTITISQGSYIRASADKPSE
QKSLGAVLSDIGAQVQESSRGRSGNSTEYRGMVGSLIYASTGTRPDVAYA
VRRAARRMEDPCQEYFSTCKRIFRSLSTVPDFGIKVGGKSNGHGLEGFVD
ADWAEDIEDRKSTTGYVFKLNVTWSSTEAEYVAAGEAGKETVYLRELLGS
I
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mRNA from alignment at H-paniculata_contig43586:19..1341-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43586.11081.1 ID=mRNA_H-paniculata_contig43586.11081.1|Name=mRNA_H-paniculata_contig43586.11081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1323bp|location=Sequence derived from alignment at H-paniculata_contig43586:19..1341- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAAGAATGGGGGGCGTTGGTGAAAAATGGGACATGGGAAAGCGA AGACCTGGGGAGGTTATCGGCAGGGCGGAAGGCGATTCGTACGAAATGGA TTTTCAAGCGGAAACTGAAGGAGAACGGCAGCATGGCACGCTACAGAGTG CGACTGGTGGCTCAAGGGTTTTCACAGGTGGGGGGTGAAGATTTCTTTGA AACCAGTCCCCCCGTAGGTCGCATGTCGACGTTACGTACTGTTTTTAGCC CGGCCGCAGAACACGATTTCGAATTAGAAGGCATGGACGTAGATCCGGCG TATTTGAACTCCCCGGAAGAAGAAGAGCTGTTTGTTAAGCTATCTCCCGA GTTTTCCCCTTTCTCCCGAGACATACCGTTTGTGCGCCGCCTATGTAAAA GCCTGTACGGCCTCAAGCAGAGCGGCCGAAACTGGAATAACACTCTTGAC GATTTTCTTGTTGGGGTAGGACTCGAGCGTTCTATTACCGACTCATGCCT GTACTTTTCCCGCGACGATGGGGAAGAGACAAACCTTCTGGTGGCCGTGT ATGTTGACGACCTGGTCATTGCTGGTCGTCGTGAGAAAGTAGACGAGTTC AAGCATAACACAAGTCAGCGTTTTAGGATGAAAGACTTGGGCTCTCTCTC GCGTGTGTTGGGAATAGACGTACGACACGACCGCCCTAATGGTACCATAA CCATCTCGCAGGGTAGCTACATCCGCGCGGTACTAAAATGATACAGTTTT GACGAGTGTCGAGGAGTACCGACCCCTGCAGAGGGAAAAGGGAACATTTC TGCACCCGAGTCGGCCGACAAGCCCTCCGAACAGAAGTCACTTGGAGCTG TACTATCGGACATAGGCGCACAAGTACAAGAAAGCAGCAGAGGGAGAAGT GGCAATTCGACTGAATACAGAGGCATGGTAGGATCACTTATATACGCCTC GACAGGAACTAGACCTGATGTAGCATATGCGGTACGCCGAGCAGCACGTC GTATGGAGGACCCATGTCAAGAATACTTCAGTACATGCAAGCGCATTTTT CGTTCTCTCAGTACTGTGCCTGACTTCGGCATTAAGGTCGGCGGTAAGAG TAATGGTCACGGTCTGGAAGGATTCGTTGATGCCGATTGGGCGGAAGATA TCGAGGACCGCAAGTCCACAACAGGATACGTTTTCAAGCTGAACGGTGGT GCAATAAGTTGGTGCTCTAGGAAGCAACAGTTAGTCACGTGGTCCAGTAC AGAGGCAGAGTACGTTGCTGCAGGAGAAGCGGGAAAGGAGACGGTATATC TTAGGGAGTTACTAGGATCGATA
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Coding sequence (CDS) from alignment at H-paniculata_contig43586:19..1341-

>mRNA_H-paniculata_contig43586.11081.1 ID=mRNA_H-paniculata_contig43586.11081.1|Name=mRNA_H-paniculata_contig43586.11081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2406bp|location=Sequence derived from alignment at H-paniculata_contig43586:19..1341- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAAGAATGGGGGGCGTTGGTGAAAAATGGGACATGGGAAAGCGA
AGACCTGGGGAGGTTATCGGCAGGGCGGAAGGCGATTCGTACGAAATGGA
TTTTCAAGCGGAAACTGAAGGAGAACGGCAGCATGGCACGCTACAGAGTG
CGACTGGTGGCTCAAGGGTTTTCACAGGTGGGGGGTGAAGATTTCTTTGA
AACCAGTCCCCCCGTAGGTCGCATGTCGACGTTACGTACTGTTTTTAGCC
CGGCCGCAGAACACGATTTCGAATTAGAAGGCATGGACGTAGATCCGGCG
TATTTGAACTCCCCGGAAGAAGAAGAGCTGTTTGTTAAGCTATCTCCCGA
GTTTTCCCCTTTCTCCCGAGACATACCGTTTGTGCGCCGCCTATGTAAAA
GCCTGTACGGCCTCAAGCAGAGCGGCCGAAACTGGAATAACACTCTTGAC
GATTTTCTTGTTGGGGTAGGACTCGAGCGTTCTATTACCGACTCATGCCT
GTACTTTTCCCGCGACGATGGGGAAGAGACAAACCTTCTGGTGGCCGTGT
ATGTTGACGACCTGGTCATTGCTGGTCGTCGTGAGAAAGTAGACGAGTTC
AAGCATAACACAAGTCAGCGTTTTAGGATGAAAGACTTGGGCTCTCTCTC
GCGTGTGTTGGGAATAGACGTACGACACGACCGCCCTAATGGTACCATAA
CCATCTCGCAGGGTAGCTACATCCGCGCGATGGAGGAAGAATGGGGGGCG
TTGGTGAAAAATGGGACATGGGAAAGCGAAGACCTGGGGAGGTTATCGGC
AGGGCGGAAGGCGATTCGTACGAAATGGATTTTCAAGCGGAAACTGAAGG
AGAACGGCAGCATGGCACGCTACAGAGTGCGACTGGTGGCTCAAGGGTTT
TCACAGGTGGGGGGTGAAGATTTCTTTGAAACCAGTCCCCCCGTAGGTCG
CATGTCGACGTTACGTACTGTTTTTAGCCCGGCCGCAGAACACGATTTCG
AATTAGAAGGCATGGACGTAGATCCGGCGTATTTGAACTCCCCGGAAGAA
GAAGAGCTGTTTGTTAAGCTATCTCCCGAGTTTTCCCCTTTCTCCCGAGA
CATACCGTTTGTGCGCCGCCTATGTAAAAGCCTGTACGGCCTCAAGCAGA
GCGGCCGAAACTGGAATAACACTCTTGACGATTTTCTTGTTGGGGTAGGA
CTCGAGCGTTCTATTACCGACTCATGCCTGTACTTTTCCCGCGACGATGG
GGAAGAGACAAACCTTCTGGTGGCCGTGTATGTTGACGACCTGGTCATTG
CTGGTCGTCGTGAGAAAGTAGACGAGTTCAAGCATAACACAAGTCAGCGT
TTTAGGATGAAAGACTTGGGCTCTCTCTCGCGTGTGTTGGGAATAGACGT
ACGACACGACCGCCCTAATGGTACCATAACCATCTCGCAGGGTAGCTACA
TCCGCGCGTCGGCCGACAAGCCCTCCGAACAGAAGTCACTTGGAGCTGTA
CTATCGGACATAGGCGCACAAGTACAAGAAAGCAGCAGAGGGAGAAGTGG
CAATTCGACTGAATACAGAGGCATGGTAGGATCACTTATATACGCCTCGA
CAGGAACTAGACCTGATGTAGCATATGCGGTACGCCGAGCAGCACGTCGT
ATGGAGGACCCATGTCAAGAATACTTCAGTACATGCAAGCGCATTTTTCG
TTCTCTCAGTACTGTGCCTGACTTCGGCATTAAGGTCGGCGGTAAGAGTA
ATGGTCACGGTCTGGAAGGATTCGTTGATGCCGATTGGGCGGAAGATATC
GAGGACCGCAAGTCCACAACAGGATACGTTTTCAAGCTGAACGTCGGCCG
ACAAGCCCTCCGAACAGAAGTCACTTGGAGCTGTACTATCGGACATAGGC
GCACAAGTACAAGAAAGCAGCAGAGGGAGAAGTGGCAATTCGACTGAATA
CAGAGGCATGGTAGGATCACTTATATACGCCTCGACAGGAACTAGACCTG
ATGTAGCATATGCGGTACGCCGAGCAGCACGTCGTATGGAGGACCCATGT
CAAGAATACTTCAGTACATGCAAGCGCATTTTTCGTTCTCTCAGTACTGT
GCCTGACTTCGGCATTAAGGTCGGCGGTAAGAGTAATGGTCACGGTCTGG
AAGGATTCGTTGATGCCGATTGGGCGGAAGATATCGAGGACCGCAAGTCC
ACAACAGGATACGTTTTCAAGCTGAACGTCACGTGGTCCAGTACAGAGGC
AGAGTACGTTGCTGCAGGAGAAGCGGGAAAGGAGACGGTATATCTTAGGG
AGTTACTAGGATCGATATCACGTGGTCCAGTACAGAGGCAGAGTACGTTG
CTGCAGGAGAAGCGGGAAAGGAGACGGTATATCTTAGGGAGTTACTAGGA
TCGATA
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