mRNA_H-paniculata_contig4355.11077.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4355.11077.1
Unique NamemRNA_H-paniculata_contig4355.11077.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4355.11077.1 vs. uniprot
Match: D8LQ44_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ44_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 4.270e-50
Identity = 106/203 (52.22%), Postives = 130/203 (64.04%), Query Frame = 3 
Query:  690 TVQDLDKEELEEIKVKHRMMLTRGLADFIHTCLGLRGELFVPEPATQAG----------------------RNTNNYSNNRGGRSGRGTGRGGRYTAPTPKEDKVAESKKIRRRMLVDVLVRGETSIPPSILMFTVGLIRHWGDSQACRKALNIATAIMAEYDLRSDVMRQKLSRDLFRTTIDALVEGAAHLRGMEWEAVVLV 1232
            T +DLDK+ELEE+K+KHR+ LT+GLAD +H CL LRGEL +P  A   G                           YS     R GR    GG  +    + +KV + K+ RRR L+DV VRG+ SIPPS++MFTVGLIRHWGD+ +CRKAL IA  I+ EYDLRSDVM+Q+LSRDLF   +DALV GA  L+GMEWEAV LV
Sbjct:  955 TEEDLDKDELEELKIKHRLHLTKGLADIVHACLALRGELNLPPSALDKGGAGGXXXXXXXXXXXXXXXXXXXXXQPYS----ARGGRXXXXGGNLSKKAAQAEKVLDGKRKRRRALLDVFVRGQGSIPPSLVMFTVGLIRHWGDAYSCRKALAIAHCILLEYDLRSDVMKQRLSRDLFSGVVDALVAGAPQLQGMEWEAVTLV 1153
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4355.11077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ44_ECTSI4.270e-5052.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4355contigH-paniculata_contig4355:4412..7888 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.9
Seed ortholog evalue5e-39
Seed eggNOG ortholog2880.D8LQ44
KEGG koko:K14289
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nuclear export signal receptor activity
EggNOG OGsCOG5101@1,KOG2020@2759
COG Functional cat.UY
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03016,ko03036
Exons4
Model size1393
Cds size633
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4355.11077.1prot_H-paniculata_contig4355.11077.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4355 4429..7145 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930319.6247017-UTR-H-paniculata_contig4355:4411..44281622930319.6247017-UTR-H-paniculata_contig4355:4411..4428Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4355 4412..4428 -
1691481239.9803286-UTR-H-paniculata_contig4355:4411..44281691481239.9803286-UTR-H-paniculata_contig4355:4411..4428Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4355 4412..4428 -
1622930319.7193692-UTR-H-paniculata_contig4355:7145..78881622930319.7193692-UTR-H-paniculata_contig4355:7145..7888Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4355 7146..7888 -
1691481240.0279784-UTR-H-paniculata_contig4355:7145..78881691481240.0279784-UTR-H-paniculata_contig4355:7145..7888Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4355 7146..7888 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930319.6436367-CDS-H-paniculata_contig4355:4428..47131622930319.6436367-CDS-H-paniculata_contig4355:4428..4713Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4355 4429..4713 -
1691481239.9903426-CDS-H-paniculata_contig4355:4428..47131691481239.9903426-CDS-H-paniculata_contig4355:4428..4713Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4355 4429..4713 -
1622930319.663914-CDS-H-paniculata_contig4355:5321..54861622930319.663914-CDS-H-paniculata_contig4355:5321..5486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4355 5322..5486 -
1691481239.998508-CDS-H-paniculata_contig4355:5321..54861691481239.998508-CDS-H-paniculata_contig4355:5321..5486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4355 5322..5486 -
1622930319.6817458-CDS-H-paniculata_contig4355:5947..60941622930319.6817458-CDS-H-paniculata_contig4355:5947..6094Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4355 5948..6094 -
1691481240.0079947-CDS-H-paniculata_contig4355:5947..60941691481240.0079947-CDS-H-paniculata_contig4355:5947..6094Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4355 5948..6094 -
1622930319.699333-CDS-H-paniculata_contig4355:7109..71451622930319.699333-CDS-H-paniculata_contig4355:7109..7145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4355 7110..7145 -
1691481240.0182967-CDS-H-paniculata_contig4355:7109..71451691481240.0182967-CDS-H-paniculata_contig4355:7109..7145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4355 7110..7145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4355.11077.1

>prot_H-paniculata_contig4355.11077.1 ID=prot_H-paniculata_contig4355.11077.1|Name=mRNA_H-paniculata_contig4355.11077.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=211bp
MMLTRGLADFIHTCLGLRGELFVPEPATQAGRNTNNYSNNRGGRSGRGTG
RGGRYTAPTPKEDKVAESKKIRRRMLVDVLVRGETSIPPSILMFTVGLIR
HWGDSQACRKALNIATAIMAEYDLRSDVMRQKLSRDLFRTTIDALVEGAA
HLRGMEWEAVVLVTFPFACLTRICSKFIHPPINVFVVVGGPRLAMPVVYL
RHTRSYSGIL*
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mRNA from alignment at H-paniculata_contig4355:4412..7888-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4355.11077.1 ID=mRNA_H-paniculata_contig4355.11077.1|Name=mRNA_H-paniculata_contig4355.11077.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3477bp|location=Sequence derived from alignment at H-paniculata_contig4355:4412..7888- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACGTACTGATGTGAACTTTTTGGTCACCTGGGTTTATTCTGTTGTTGA
CTGTTACAGGGCACCGAATTGATACCGCCAAGGTTTAGACATTGGTCTTG
ACGGTTAGAATTTGTATTGGTTTGGGGGATCATTAGGGAACTGTGCCCTG
CACTGCACCCACAATCACGAAATTAGGTGTCGCAGTTACAAGTGGTGTGT
GGGAGATGTGAGACGAGAGAGCCATCGACTTCTGCGTGGATAAATTCAAC
TAAAGTCTCCCTTGTGGTTTGCAGTGTACAGTGTACAGTACGTAACTAAA
ATAGGTGTGTTCGTTGTTGAGGAAGACTGTTGAGTTATATTGTATGAAAG
AGAGTCACATGATGAATCGGCATTCGTATATGAGGTTCAGCAATTTGGGT
TACAGGAATACAGTCTGTCATCACCGCTCCAGGACGTGCGTGATAAGGAC
GCTTTCTCGAGGTGAGAACGCTTCGTTGCTTGATATACGTATCACGTTCT
TAAAGCCGGTTGCCCGCACTAGTGCTAATCGTTAACTTGTGTAGCGATCA
ATTTCGCCCTCTAGATGTGTTGGATGTGCCCGTTTGCTGCTGTACCCTAA
ATCGTCCAAAATAGACAGGGTACAGCCTTTCCTGTACTCGGCCCTATATA
TTATGCCGGATGAAGCTTGACGATTGTTTTTGGTGTTGAACCGTGCAGGA
TCTAGATAAGGAGGAGCTTGAAGAAATCAAGGTCAAGCATCGCATGATGC
TCACCCGGGGGCTTGCCGACTTTATACACGTGAGTACTCTTAGTCGTACT
CCAGTGTTTGCTGCCATCTTATTCACAAGTGCTAAGGACTTGTAACCTTA
AATTTGTGTTGCGTGGTGTATGCAAGGGTAGAAGTTATTGGGTATGTCAA
ATGTGTTGCGAGTCATTCCACTGTGATCTGTTGCTTTTGTTTTTAGGAAG
ATACTCGTACAACCTCACGGTACAAACTCATGGCATTCATCTCAACGACA
AGGTTTGTTTATCTGCCTCTTGTGGTCGGTGTCCATCTTTGTCTGCTGTA
CAGAGTTGAAGCCGTGTGAAACGCTCGAGTCGTCAAACTGTCAAACCGGA
TAGAGTCTTCGTCATCCTTGTTCGTTGTTTGTTTGGCCCGGTTTTCAGGC
ACGCGTGACGTAGAACAAGAACTCTTGTATTCAAGCAGAAGAAGCTTAGT
CGCAAGGCTTCGTTGCCTCTAGCCCACCCATTTCACTCCAGTTCAACGAT
AAAGAGGAGGATAGGGCTGTAAATGATATCGTGTTTGGTACCAAGCTAGA
TATTTTGCTCTAATATCCTCAAGTGAGGTTTTGATGAGTTCGTTTTCTGA
GAATTTTTCACTACTGGTCGTTACTATACTGCAATGTTCGATTACTAAGG
GGACAGTCAATGACAATGCCAGTCAATACGCATTTTTTATACCTCAAATT
TTGGAAGATATCCCTCCCTTTCTCTTTTTTGCAAGATATCCCTCGTTTGA
CGCACAGGGGGAAAGTAAGGTGGGTGTTTGGTTGACCCGGTGGGCTGACA
GCGATGATGGCTCATTGGCTTGTCTCTTGGTCGATATGGCATAACGCTAT
GCGGCACTTGGGAAGGTGCCATTGCCTCTTAGCTATGTTATTATCTATTT
CACCTGGTTCGTGATGAACAGTGTACAGCGTTTTATACGTTCGAGATTTT
CTTTGCGGCGCTGAATACTGCAACAACCGTTCACTCGATGATGCGCTCTT
GTTTCTGCGTTTAATGTGATTCCCCGTGATCCCCTGCTCTGTAGACGTGC
CTGGGGCTGAGGGGAGAGCTGTTCGTCCCAGAGCCCGCTACGCAGGCTGG
ACGCAACACGAATAATTACAGCAACAATAGGGGAGGCAGAAGTGGCAGGG
GGACAGGGCGGGGGGGGAGATACACAGCGCCGACGCCGAAGGTAAACCGG
GAAATCGGATAGGACAAGCAGTACCGACATGTTTTTGGATACGACAGGAG
TCTACAGCTGCGGTTGCAAATCTGCGATTACCTTGTATCATGGTATTTTA
TCGATTTTGGCGCAAATACGATACAGGAAAGGTTAACCTGTACAGTGGAG
CTACGGCTTCCCCCGTTCAGTCGTGTTTTTTTTGCTTCACACTGGATCTT
GGATCTTGGATCTTTTACATGGCAGACTTGAAGGACTGTTCGGGAAGAAT
GACGATCATCAGTTTTAATGCTCTCTCATGTCATCAGTTGTCATCAACAA
AGAGAAAGCATGCTGTTTACCTGTCCATTACAGTACGCTAGCTGTTGATA
GCTAACGTGCTTACATGGTGCAAATGGTTATGTGATAGCCGTGTAAACAT
TGTGTTTTGATGTTATTTGATGTGTTTTGACGTGTTTTGATGTTATTCGA
AGGAGGATAAAGTCGCTGAATCTAAGAAGATACGTCGGAGGATGCTGGTG
GACGTGCTAGTTCGAGGAGAAACCTCCATCCCACCAAGCATTCTCATGTT
TACCGTGGGTCTGATCAGGCACTGGGGTGACTCACAGGCATGCAGAAAGG
CGCTCAACATTGCCACGGTGAGAAAGAAAATCACACATGAATATATAGAT
ATGAATTAGGTGTGACTTGCATCTTGAACTAGTCATCATTGTTCCTTTTG
ACAGTTGCTGCAATTATTACTGAGTGATAGAGACAAAGGGGTGCATCCCA
CCTGTGCCTGGAGAGAGAGTCCAGTATCTACTTCTGTCGAGGTGAAAGAG
GGGGTGCTGTGCTGTGCTGTGCTGTGCTGCATGTTTCCTCGAACACATCG
TTTGGCGAGCAAAAATTGTTTTGATTGTGTAGTGTAGTGTAGTATAGTAT
AGTGTAATATAACTGGTAACTTTTAGCTGTTGATCATTGTTTGCTCTATG
TAGAGAGGAGACAAGAGTGCTTCGAGTTAAGGTGTAAGTGAAATATTGAC
ACGAGAGTGGAGGAATTCCTTTAATTATTTGCTTGATTTTGATGTAACTG
TTGATGCGATCGATGGTTGACCGTCGCGGCGTTGAATTTGCTGTGTTTCA
GGCTGTATTATTGGATCATCCTTATGTTGATTTATTTTCACCTGTGTGTG
CCATCGTTGGACTATCCTCATACTGATCGATTAATTTATTATTAATTTAT
TGTCACCTTTTTGTTACCTTATCAGGCGATTATGGCAGAGTACGACTTAC
GGTCCGACGTGATGAGGCAGAAGCTGTCAAGGGATCTGTTCCGCACGACG
ATCGATGCTCTGGTGGAAGGAGCAGCACACCTCAGGGGAATGGAATGGGA
AGCGGTCGTGCTGGTAACGTTTCCATTTGCATGTTTGACTCGAATTTGTT
CGAAATTTATCCATCCACCTATCAATGTCTTCGTAGTTGTAGGCGGGCCA
CGACTAGCTATGCCGGTGGTGTACCTCAGACATACTCGGTCATATAGTGG
GATCTTGTGAAATTGTTCCGAGTCACG
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Coding sequence (CDS) from alignment at H-paniculata_contig4355:4412..7888-

>mRNA_H-paniculata_contig4355.11077.1 ID=mRNA_H-paniculata_contig4355.11077.1|Name=mRNA_H-paniculata_contig4355.11077.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1266bp|location=Sequence derived from alignment at H-paniculata_contig4355:4412..7888- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGCTCACCCGGGGGCTTGCCGACTTTATACACATGATGCTCACCCG
GGGGCTTGCCGACTTTATACACACGTGCCTGGGGCTGAGGGGAGAGCTGT
TCGTCCCAGAGCCCGCTACGCAGGCTGGACGCAACACGAATAATTACAGC
AACAATAGGGGAGGCAGAAGTGGCAGGGGGACAGGGCGGGGGGGGAGATA
CACAGCGCCGACGCCGAAGACGTGCCTGGGGCTGAGGGGAGAGCTGTTCG
TCCCAGAGCCCGCTACGCAGGCTGGACGCAACACGAATAATTACAGCAAC
AATAGGGGAGGCAGAAGTGGCAGGGGGACAGGGCGGGGGGGGAGATACAC
AGCGCCGACGCCGAAGGAGGATAAAGTCGCTGAATCTAAGAAGATACGTC
GGAGGATGCTGGTGGACGTGCTAGTTCGAGGAGAAACCTCCATCCCACCA
AGCATTCTCATGTTTACCGTGGGTCTGATCAGGCACTGGGGTGACTCACA
GGCATGCAGAAAGGCGCTCAACATTGCCACGGAGGATAAAGTCGCTGAAT
CTAAGAAGATACGTCGGAGGATGCTGGTGGACGTGCTAGTTCGAGGAGAA
ACCTCCATCCCACCAAGCATTCTCATGTTTACCGTGGGTCTGATCAGGCA
CTGGGGTGACTCACAGGCATGCAGAAAGGCGCTCAACATTGCCACGGCGA
TTATGGCAGAGTACGACTTACGGTCCGACGTGATGAGGCAGAAGCTGTCA
AGGGATCTGTTCCGCACGACGATCGATGCTCTGGTGGAAGGAGCAGCACA
CCTCAGGGGAATGGAATGGGAAGCGGTCGTGCTGGTAACGTTTCCATTTG
CATGTTTGACTCGAATTTGTTCGAAATTTATCCATCCACCTATCAATGTC
TTCGTAGTTGTAGGCGGGCCACGACTAGCTATGCCGGTGGTGTACCTCAG
ACATACTCGGTCATATAGTGGGATCTTGTGAGCGATTATGGCAGAGTACG
ACTTACGGTCCGACGTGATGAGGCAGAAGCTGTCAAGGGATCTGTTCCGC
ACGACGATCGATGCTCTGGTGGAAGGAGCAGCACACCTCAGGGGAATGGA
ATGGGAAGCGGTCGTGCTGGTAACGTTTCCATTTGCATGTTTGACTCGAA
TTTGTTCGAAATTTATCCATCCACCTATCAATGTCTTCGTAGTTGTAGGC
GGGCCACGACTAGCTATGCCGGTGGTGTACCTCAGACATACTCGGTCATA
TAGTGGGATCTTGTGA
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