mRNA_H-paniculata_contig435.11073.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig435.11073.1 vs. uniprot
Match: A0A6H5KWC2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWC2_9PHAE) HSP 1 Score: 147 bits (372), Expect = 7.650e-35 Identity = 106/262 (40.46%), Postives = 145/262 (55.34%), Query Frame = 2
Query: 569 LACRSGSGREETDASMGDWDAVYTEVGGGSRDVKEKRAGLRMLFRPAGAVLRLVREFVARQGGYSTTGMKARIVAWRRSFSLAMVGLAAGAVLLMSTAGPASAS-GVVDQMEK--TRLTDMPEFSYQIREELIDLMEMDPRERAIDLKDLTLYSEELDKLDMFGDEVAVDMAMKETMRLKQRRVHEDIINKGKGRGFLPALKSSVKAIGFGIVVSAVSFSVG---WVLKSFLSMAAEEEVHLYGEEISVDATEKPQDELEGL 1336
L CR G GD AV + GGG + R R F AVLR VR+ V R S+ G +AR+ AWRR S+A +G+AA +++ ++AGPA A G+ + E TRLT MPE YQ RE L E ++R D DLT + EELD++DMF ++VA +E++RLK R ED +G+ + + AI G+ V +G W ++F++MA EEE+ LYGEEISVDATEKP +EL+ L
Sbjct: 87 LGCREGERGMNEGVHYGD--AVGGKEGGGEGEAVAAR---RARFARPAAVLRFVRQAVERGVSMSSKGTRARVAAWRRRMSVAFIGVAAAVMMMTASAGPAQALFGIGGRKEAPVTRLTYMPESVYQEREALQKFCETPQQDRLFDANDLTAFEEELDEIDMFSNKVAPSYGARESLRLKYARHAEDFATMEEGKLTAGSFGFASFAIVGGLAVVVGGTVLGGFTWACRAFMNMAREEEIFLYGEEISVDATEKPDEELDDL 343 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig435.11073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig435.11073.1 >prot_H-paniculata_contig435.11073.1 ID=prot_H-paniculata_contig435.11073.1|Name=mRNA_H-paniculata_contig435.11073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=482bp MSRRSKRSPLAAAGSTATAGLLLLCWVCAAPVEGFVAAVGGGAVASRASVback to top mRNA from alignment at H-paniculata_contig435:2539..17180- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig435.11073.1 ID=mRNA_H-paniculata_contig435.11073.1|Name=mRNA_H-paniculata_contig435.11073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=14642bp|location=Sequence derived from alignment at H-paniculata_contig435:2539..17180- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig435:2539..17180- >mRNA_H-paniculata_contig435.11073.1 ID=mRNA_H-paniculata_contig435.11073.1|Name=mRNA_H-paniculata_contig435.11073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2892bp|location=Sequence derived from alignment at H-paniculata_contig435:2539..17180- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |