mRNA_H-paniculata_contig43486.11071.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43486.11071.1
Unique NamemRNA_H-paniculata_contig43486.11071.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43486.11071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43486contigH-paniculata_contig43486:726..1234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size510
Cds size480
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930318.71574-CDS-H-paniculata_contig43486:725..12051622930318.71574-CDS-H-paniculata_contig43486:725..1205Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43486 726..1205 +
1691481239.6033723-CDS-H-paniculata_contig43486:725..12051691481239.6033723-CDS-H-paniculata_contig43486:725..1205Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43486 726..1205 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930318.732979-UTR-H-paniculata_contig43486:1205..12341622930318.732979-UTR-H-paniculata_contig43486:1205..1234Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig43486 1206..1234 +
1691481239.6117046-UTR-H-paniculata_contig43486:1205..12341691481239.6117046-UTR-H-paniculata_contig43486:1205..1234Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig43486 1206..1234 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43486.11071.1prot_H-paniculata_contig43486.11071.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43486 726..1205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43486.11071.1

>prot_H-paniculata_contig43486.11071.1 ID=prot_H-paniculata_contig43486.11071.1|Name=mRNA_H-paniculata_contig43486.11071.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=160bp
WTFPRELKSRTANTKQNQPKLKTSKITWQKKTKTFNASSVCTCTQYTARQ
ELQKTPKKIYIYTYLCTTDFCLLFIWTHPPPRDFATTIETNIVHGVVYTC
THSLARLLLESNIGIYPIKKHPPLALVPAQYPGTIYPPFGFQSETRHKSY
YLRPPCLIV*
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mRNA from alignment at H-paniculata_contig43486:726..1234+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43486.11071.1 ID=mRNA_H-paniculata_contig43486.11071.1|Name=mRNA_H-paniculata_contig43486.11071.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=509bp|location=Sequence derived from alignment at H-paniculata_contig43486:726..1234+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGACTTTTCCCAGAGAGCTCAAGAGTCGCACCGCTAACACTAAACAAAA
CCAACCTAAACTAAAGACAAGTAAAATTACTTGGCAAAAAAAAACAAAAA
CATTTAATGCTTCTTCTGTCTGTACTTGCACTCAATACACCGCGCGTCAA
GAACTACAAAAAACACCAAAAAAAATATATATATATACCTATTTGTGTAC
GACTGATTTTTGTCTTTTGTTTATCTGGACCCACCCACCCCCTCGTGACT
TCGCAACAACAATAGAGACAAACATCGTGCATGGTGTGGTATATACTTGT
ACCCACTCCCTAGCGCGATTACTGCTCGAAAGTAACATCGGTATTTATCC
GATAAAAAAGCATCCTCCGCTCGCCTTAGTACCAGCACAATACCCCGGCA
CAATTTACCCTCCCTTCGGCTTCCAGTCTGAGACACGACACAAGTCATAT
TATCTCCGACCACCATGCCTTATCGTTTAGGTTGCCACTTAAGGGGTTGG
CTGCTCGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig43486:726..1234+

>mRNA_H-paniculata_contig43486.11071.1 ID=mRNA_H-paniculata_contig43486.11071.1|Name=mRNA_H-paniculata_contig43486.11071.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=960bp|location=Sequence derived from alignment at H-paniculata_contig43486:726..1234+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGACTTTTCCCAGAGAGCTCAAGAGTCGCACCGCTAACACTAAACAAAA
CCAACCTAAACTAAAGACAAGTAAAATTACTTGGCAAAAAAAAACAAAAA
CATTTAATGCTTCTTCTGTCTGTACTTGCACTCAATACACCGCGCGTCAA
GAACTACAAAAAACACCAAAAAAAATATATATATATACCTATTTGTGTAC
GACTGATTTTTGTCTTTTGTTTATCTGGACCCACCCACCCCCTCGTGACT
TCGCAACAACAATAGAGACAAACATCGTGCATGGTGTGGTATATACTTGT
ACCCACTCCCTAGCGCGATTACTGCTCGAAAGTAACATCGGTATTTATCC
GATAAAAAAGCATCCTCCGCTCGCCTTAGTACCAGCACAATACCCCGGCA
CAATTTACCCTCCCTTCGGCTTCCAGTCTGAGACACGACACAAGTCATAT
TATCTCCGACCACCATGCCTTATCGTTTAGTGGACTTTTCCCAGAGAGCT
CAAGAGTCGCACCGCTAACACTAAACAAAACCAACCTAAACTAAAGACAA
GTAAAATTACTTGGCAAAAAAAAACAAAAACATTTAATGCTTCTTCTGTC
TGTACTTGCACTCAATACACCGCGCGTCAAGAACTACAAAAAACACCAAA
AAAAATATATATATATACCTATTTGTGTACGACTGATTTTTGTCTTTTGT
TTATCTGGACCCACCCACCCCCTCGTGACTTCGCAACAACAATAGAGACA
AACATCGTGCATGGTGTGGTATATACTTGTACCCACTCCCTAGCGCGATT
ACTGCTCGAAAGTAACATCGGTATTTATCCGATAAAAAAGCATCCTCCGC
TCGCCTTAGTACCAGCACAATACCCCGGCACAATTTACCCTCCCTTCGGC
TTCCAGTCTGAGACACGACACAAGTCATATTATCTCCGACCACCATGCCT
TATCGTTTAG
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