prot_H-paniculata_contig43484.11070.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig43484.11070.1
Unique Nameprot_H-paniculata_contig43484.11070.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length38
Homology
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BLAST of mRNA_H-paniculata_contig43484.11070.1 vs. uniprot
Match: D7FIJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ8_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 1.110e-5
Identity = 20/38 (52.63%), Postives = 28/38 (73.68%), Query Frame = 0 
Query:    1 MSKDGLPWFMFGSHSLHHVAWGYLENVSSQKFLRRRPI 38
            MSKDGL +F+  SHSLH +AWGYLE+ +  +  R+R +
Sbjct:  747 MSKDGLAYFLLASHSLHRIAWGYLEHRNPPQRPRKRRV 784
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43484.11070.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIJ8_ECTSI1.110e-552.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..24
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 25..38

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43484contigH-paniculata_contig43484:919..1032 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43484.11070.1mRNA_H-paniculata_contig43484.11070.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig43484 910..1032 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig43484.11070.1 ID=prot_H-paniculata_contig43484.11070.1|Name=mRNA_H-paniculata_contig43484.11070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=38bp
MSKDGLPWFMFGSHSLHHVAWGYLENVSSQKFLRRRPI
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