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Homology
BLAST of mRNA_H-paniculata_contig434.11062.1 vs. uniprot
Match: A0A6H5KYE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYE0_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 6.040e-15 Identity = 64/128 (50.00%), Postives = 74/128 (57.81%), Query Frame = 1
Query: 34 PLGRNSQSLGGITGAESSPGSDRSSFVSRVGSYALTDIGVAESER---DAIGAAGRR---GLYSPTSTVMRST-GVSELGSDTRLSSGSPGXXXXXXXXXXXXAQSGWERAWMRQRDDVGQFRGAGGQ 396
P GRNSQS+GG+T G + SFVSR GSYALTDIGV S++ D G AG G SP ST+MRS GVSE+G++ R S GS A SGWERAWMRQR+D F G Q
Sbjct: 177 PSGRNSQSMGGMTAESDGDGGE--SFVSRAGSYALTDIGVGHSDQGRGDQAGKAGGASGAGALSPASTIMRSVHGVSEVGTE-RDSYGSE--TAYTNASDSPGAHSGWERAWMRQRNDARHFGGGPQQ 299
BLAST of mRNA_H-paniculata_contig434.11062.1 vs. uniprot
Match: D8LN23_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN23_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 1.210e-13 Identity = 59/119 (49.58%), Postives = 71/119 (59.66%), Query Frame = 1
Query: 34 PLGRNSQSLGGITGAESSPGSDRSSFVSRVGSYALTDIGVAESERDAIGAAGRRG------LYSPTSTVMRST-GVSELGSDTRLSSGSPGXXXXXXXXXXXXAQSGWERAWMRQRDDV 369
P GRNSQS+GG+T G + SFVSR GSYALTDIGV S++ AG+ G SPTST+MRS G+SE+G++ R S GS A SGWERAWMRQR+D
Sbjct: 185 PSGRNSQSMGGMTAESDGDGGE--SFVSRAGSYALTDIGVGHSDQGRGNQAGKAGGDSGAGALSPTSTLMRSVHGMSEVGTE-RDSYGSEAAYTNASDSPG--AHSGWERAWMRQRNDA 298
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-13_002180.1 |
| Exons | 5 |
| Model size | 3055 |
| Cds size | 399 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig434.11062.1 >prot_H-paniculata_contig434.11062.1 ID=prot_H-paniculata_contig434.11062.1|Name=mRNA_H-paniculata_contig434.11062.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
GDRRGTSPLRSPLGRNSQSLGGITGAESSPGSDRSSFVSRVGSYALTDIG VAESERDAIGAAGRRGLYSPTSTVMRSTGVSELGSDTRLSSGSPGGSDGE YNSDSPGAQSGWERAWMRQRDDVGQFRGAGGQ* back to topmRNA from alignment at H-paniculata_contig434:878..8612+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig434.11062.1 ID=mRNA_H-paniculata_contig434.11062.1|Name=mRNA_H-paniculata_contig434.11062.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7735bp|location=Sequence derived from alignment at H-paniculata_contig434:878..8612+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GGGGACAGGAGGGGAACATCGCCGCTACGCAGTCCGCTTGGTGGGTGTGC
TAGGAGAAAAGGGCGGTTTGTCTAGTTAGGATGTTGGGATGAGGAGGAGG
GGGTGTTAAGGAAGAGGATTATTGAAAAGGTCCGTACGCTAAGTAAACGA
GTGAGCCTGATTTTCTGTTTTGATCTGTTTGTTTTAGCGCTTGTGTAATG
TAATGGCAACCATAGTGATTCGATTTTTTTTAAACAAATGGAAATGTTGG
GGAAGATTGATCTCGCTCGTTCAGTGCTGCTCTCATTAGGTTTTTATCCT
GACGTGATGTTAGCAATAATCACAACTATGTATATGCAGGTGATCGGTAG
CATTTTCCAAATTTAGGAAGGGTTACTTGGTTGTCTACAGCTCATAGTCA
TGACTGTACATGGTCATGTGAAATTTCGCAAATTCTTAAAAGGGTAATTA
TTTTCAATATCGTTTGTTTGGCCTACGATTATGGCTGGATGTACGGGTCA
GTAGAGTTTGAGCATTGTATGCGGAGTATTATTTCTCAATATGTGTATCT
CAGTCGCGCTGGCTATATGATTTTCCTAATATTTTAGCACATACATATAT
AATATATACTACAGTGGGATATACTAACGGAGACTAAATTTATTCTCTCA
ATGAATACGGATCGAAATGGAACACGGATTTTTGCGTTAGATCCGAATAA
AAAAATGCAGCAATCCGTTCATGGACTCTTTTTGAGAAATACGAAAATTC
GAGAAATTAGAGCTAAACAAAACGTTTTTTCCCCGAGGAATTGAAAATCG
TCGAAATTCGCCAATTCATATTATGGGAGAAAGATTTTTTCGGATTTCTT
AACCATTTCATTGAAAATCACCAAACGCCTATTCTGTTTCCTAGGTATGA
TAGAACCAAATATGTAGAAGCAATCCGTTTGTAAAAAAATCCTATTTTGT
GCTAAAATAAACGTTTAAAAAGTGAAGAATTCCCATCGTGGGAAACGGGA
TATGGCAGTTTCGCACAGAGGTAGGCAGAATTTGTCGTATTTCTTGAGAC
AGAGATTTCTATTTCCATCTATATTTTGCAACACCGCTGAGAGTAAGTAA
CACTGGCGACATGTTGGAAAAACCCGTTGTGAAAAATCCGTTTTTTTGAG
AGACAAAAACCCTCCCGACCAGAAAGGTTTACGCCATTTCATTACAGGGA
AAGATGAAATATATTGTACTCCTCGAGATGTAGATCAGCAATTGAAGGAT
CGTTTGGTACACTTGCGCATGTGGACCTTGAGAAGCGAAGGGGTATCAAC
GTTCTGGACGAAGAGGGGGATTCTGCATGGTTTCAAGCAACAAGCATCAA
CATTTTTTTGCTTTGAAACACGTTAAGTATTTTCAAGATGATGAACATAC
ACAATCATGTATGAGGTTGTGCGAAAAGTAACATCACTGTAGGAGTCTGA
AAGAAATGCCGCGTCAATCTTGTTTCACTCGCGACGATCCATGATATTCG
GCTTCCATTCGGAATAGAAAAAATCTGATCCCGCCGCATGTTTTTGCTGC
GATTCCTTTTTATTCCGTAAGATTTGGCCTATAAACTGGCGATGAGATTC
CAAATTTGCGCCAATTTTTCGGAAACAAAAGCGGCTTAGGTAGTGGGATA
GTAAGTCTTCGCATCACATCTATGATACATTCATATAGCGAAAATGACAG
TATCTTCACTCGTATTTTCTGTACATGAATAAGTACAATCCCTACATGCG
AAATATAACTACATACATATACCGTAACATCCTTGGTATCGCATTCCCCT
GACACTATTTTCCAAACCCGTTTTCTGGAGAAGCATGAACCTCCACTACC
GAAACGATAAGCCTGTCGAAAGATCTCAACGAAATCTTTCCAGCGATCTC
CTATCGGTGTCATTAGCACCGCCATTGTCGAGGAAATCGAGCTTGACAAT
GTATCAATGGGCGTAAGATGAAACGATCTGTACGGTACATACATTACGAA
AGGTGTGAATGATATAGCATTGATTCTTTGGGCACTGGTCTCCACACAAT
CGTCGCTACCTACCTGCCTAATGTAAAAACTACATATACCGCCTCATGAC
ACGAGATGTATTCAGGTGACCATGAAGATAGTCCTCAGTACAGGCAACAT
GAACAGGGCTCAACACCAAAGGTCGGGAGTTCCAGTAGTTTGGCATGGTT
CTTTGCACGATGACTGGCTACAGGCAGCGCTCGACCTTGATTTATGTACG
TATTTATCTATTTGCGAGGAAGTGCGCTAGACTCCTGCGGCACCCTAGGT
GCGCCAGTAGGGGACGTAGGTTATTACACCCCTCCCGTAACCACCATACT
CGCGTCAGCCCATTAACCCTTTGGAAACGGCCTGATGATAAGAATTGCTA
GCGATTAGTCCTTCAATAGTAATGAATAGGTTGACAGATGCCACATCAGC
TCTGGACAGATGGCGAGTGAATATCAGATGGATGCACAAGGGGATTGTTA
TTTTTGTTGTTGTATGGTTCGTTTTTTTATCTTGCATTTAGTGCAGAGCG
AGAACTGGCGGAAGTAGACACATATACACACAAACACACACCGATTTTTT
TCGTAAAGGCTATGATGAAACAAATAACGCCTGCACAGCTGATGGGGAGA
TCACGGGCGCGCCCACGAGGTTGAATCTTACTTTCTGTATTATCTTGTCA
TATATATATTTCATTTGATTCGGTCAAGGTAATTAAGGCGGTCATCTTCG
TTATTTCAGAACAGTTTTTTAAATGATGTACTCAAGGTAACTCCTGAAAA
ATGAATGTCGATGCGAGCGTAGCGATCCACTAGGAGTTAATGGAATCCAT
ATGTTGAGGAGTAGCTAATGGAGCATTAGTTCACGGGGCGTAGCTAGCCG
TGGCTTCACTGCTAGTCATGAAGATTTTTTTTAACTTTCTGCAGGGAGAA
ACTCTCAATCGCTTGGCGGAATAACGGGAGCGGAATCGTCGCCAGGGTCA
GACCGGTCCAGCTTCGTCTCGAGGGTGGGGTCATACGCGCTGACGGATAT
TGGGGTTGCCGAATCAGAACGCGATGCAATAGGGGCGGCGGGTAGGCGCG
GCTTGTATTCGCCGACTTCGACGGTGATGCGATCCACGGTGAGTATCGTT
GATGTGTGTTTTTTTACAACAAACAGTATAACACTATTTTTATGTCCATG
GCACATGATGGAAACATGATGTGATGAGGACATGAGCGATTTCCACCCTG
AGAATGAAATACAAGAGTCAACGGAACGTGAAGTGTATGTACATCTATTT
GCTTGTTTTGAGTATACAGAGGGCTGGGACAAATTGGTAACTGCTGGGTG
AAGAAATCGCGGCTACATTTTTTTTTCAACTTTCTTTTCTTTTCTTTATC
CAGGGCGTGAGCGAGCTGGGATCAGACACGCGTCTATCTAGTGGTTCCCC
GGGAGGATCCGATGGTGAATACAATTCTGATAGCCCTGGTGCTCAGAGCG
GATGGGAGCGAGCATGGATGCGACAGCGAGACGATGTGGGGTAAGTGTGT
GCTATCTCGTGCCCTGAGTTTCAGGGCTTTGCTCGGTACTCCTCGGTACT
TCGAGGGGTTGTAAAATTGCGCGTGACGGCATTTACCCTTGAGAGTATTC
ATGATATATATAAATACGGTACCGAAAATGGAGATTTGTTTGTAAATTTC
GATTTCGTGTTGTACGACTAATAGGGAGCTCCAGATTCCGAACCCCAGTA
CGCTTGCACCAACTTCGCGACAAAAAACGGTTTCTTTTGTCAAAATTTTG
GAAATTTCGCGAGTTTTACGAAATGTGATGAGTTGTGAAAAGGAGAACGT
TTTGGAGCGAGCCCTTGGTGCACGTGGACTGGGGTCCGAGACCATCAGCT
CACAGGAAGCCGTGTGGGACCCAATCGAAGTTTACAAGCATATTTTTGTT
TTTGTGAACCATTTTGAGGATGATGATCCTCTCGGAACAGTTGCTATTCT
CTATCCAAGAACTTTCTTGAATGAGTACGAGCGATAGCGTCTCACACAGG
ATATCATGAAACGTATTCAGTAGGGGCATTTCTAGCAAATACTCGATAGT
GTCTACAGCATGGTTTACATTTGGCGGATTATGATCATAGCATGCGGGGC
AAGGCACTGATATGCCGTTTTGACCGGTGATAGATACATGACGTATCGCC
GACGCACCAGAAGTCATGAACACGTCGGCCCCGATACACAACCCCAGAGA
TGTGCAAAGATAGAATTTTTTCATGGAGTAGTACTTGTATATATATTTAT
ATATACATTAGTACAGAGACGTCATTCGGGCAGTGTCTCTTGAGCAAGTA
TTATTTTAAGGGTGTAGAAGATGTGTTGTGGAATTTCTCAAGGCACGCGG
AGATCTTGCCGCGATAATTTTACAATCGCGGTCCACAACGACTGTCTGCG
TTGAATTTTTGACGTCATTATCAGACGTCAAACAGGATTGGGCTGCGTCG
AAATAAAACATAAAATTGACATTATTGTCGAATGCTGCAATCTGCCGTTG
TGCACACAGCACCATGGCAACTGACTTGCCGTAAAAAAACACGGAGATAT
AGCTGCGATAATTTTTCAAACACGACTCTCTCGGGAACGGAGACATAACA
CGTTCGCAAAAAAGAGTCAATCGACAGATCTCCTTAGCAAGGTCTTTCCA
ACGGACGGAGCATTTTTTGTTGTTAGTGACTATTGCCGTGGTTCTCCCGA
AATAGTCGATCGCGTTTGAAAGGCGTTCGCACTCCGGTGATGTCTACACG
GGGTTACACGCTACTAGCTTTCCTGTCTGTGCTGTAAGTACTGCGTGTAG
TGAACTCGCTGTATTGGCATCAGGGTATTAGTATTCATGTGGTCCTATGT
TCCTTCCAGGTGGGGGTTACAAATCCCACGAATTTCTTATTTTTTTACGT
TTGTTGGTCCCCCCCTTCTTCTTTCTCGCGTGTGTTTGTGTCTATGTGTT
TTTTATTTTGGCTCGTTTTGCAGGCAATTCAGGGGAGCTGGCGGACAGTG
ACAGGTACCAGTAGCGCTTGAGTTTTTTGTTCTTTTGTTCTTGTTTTTTT
TTTTTTTTCACGCAGATGATGCTGCGGGGAATATCGCGGTGGACCTCGGT
TCAAATGGTGGGTCCGTCACGAATGAAAATCACAACCTGAAGAGTGGGCA
CGGCGTTGTGTTCACATGTAAAATGTAGGGCAGTCAGATATCCCAACCAT
GGGTGGTAGCTTTGCATAATACAAATCTGCGGCTCAAGTAGGAATACGTC
GCACTGTATGTGGGGCGGTCATGGGTCATATGATAACTTGATATCAACTC
GGGGGTTATGGATCATGCAATAGAGGACGTGTTCCTAGTTTACAGTGTGC
TCCGTAAGGGAGGCGATATATTTCCCGCCAAAGGAGCGGCGAGCGCGCGG
GAAGGGGGTAAAGGGGGGCGTTGGAGTGAGTCTGAGAGGTCGTTGAGATA
TGTGCAGAGAGCTAGTTTTGTTTGAGTATGTAAGCATGCATGAGTCATGA
TGGGGTTCTCAGGGTCTTTGGCTTTTTATGTCGCCCATGTACTGAACATG
AAGATGACGCTTGTGTGATGACTCTCAAGTTATTAATCACGAGTTGTCGT
CGTTATTTTGAAGAAGTTAGGGAAATTGCATGCCCCACCCCCCCCCCCCT
GGTGTAGTGTTCGTCTTGCATTCGTGTTTATGGGGATACAGAGTATTTTG
ATATTTTCCAACGGAAGGCTTGATACCTTTCGGGGGATGAAGAGGATCGG
TTCCGTTATAAGAGAGGCGAACTTTTACCTCGAAAAAAGATAAGATGCGT
TCCGTGCAAGGTAGATTGCCCGTGGCTGCTGCATTTTTAGGGCATTCATA
GTGCGTACATACCGTGGTAGTAGTCTGAGAGTTTCGTGTTTCTAGCCACT
GTTTATGTTTCAAGTATTTTCGCTGTGATTTCGGAGGGTAATGAGCCTGA
ATAGGGCTGGTGTTTGGTTACCCGCACTCGTGCCCCCCCCCCCCTCTGGC
CAAGGTGCTGATGCATGCAATAGTTTATCTATGTGCGGAAAGAGCCCCCC
TCCCCCTTGTGCACCCCATCCCTGTCTTTAATGTTGACGGGTGCTGATTA
GTAAAAATGCAGCTTTGAGATTAATCTAAATGAACTTTCGCCTTCTGAAT
ACAAACGTCAACATTTAGAAGCTCTGCTCACTTCTCCCCCGTGACGAAGC
ATATATATATAATATATATATATATATATTCATATCTTAAGTCGATGACA
GTGTTTTGCTTGTTTCTTGTCTCCCACCGGGCATGTCTGCTACCTGTCTT
CATTTGCGTCAGTTGGACTGTTCTGCGGCACAGGAGATTCCGAAGCGTAC
ATCATATAACGTACCGTGTCCGCGAGAGTAATATTTGTTTCAATTTTGTT
GCTGCTGACACTTCCCCCCCCCTCCCCCCTCCCGCCCCCCTTCGAAATAG
TTTTAGTTTTCTGGAAATAAGTTCTCCAATGATCAATGGGTGATCGAGGG
AAGACTGGGGGCGGGGGGTTACGGTGTGTACTGCTCAAGTGTCACTTTTT
GTAGTATATATTGAACCTGGGCCCTTGTAGCGTTGAAACGGGTCTAGCAT
TGAAATGGGTGAGTACAAATTCTGAAAGAAATGGTGTTCGATATTCGCCT
AGCAGAGATTGGCGATAGGCTATAAATCGCTCCTCCTCGTTATTGGTTTT
CTGCCACACGTAGCCCAAGCCGGCGTTGCTGGAGGGGGGACGGGGAGGTA
GTCACGATGGATAACTCAGGCAATAGCCAGATACCCCTGACCTCGAGTCC
TCCCGATTTATTATGGCTGGAAGTCACAAGTAGAGTAGTTGTTGACGGCC
CAGGGGGTGCGTTATATGAGGAGAGTGCTGTATCATACGATAACAACCGG
CAGAGGTCATTACTCTTGATGGCACAGATACTTACGCCATGCTAGCAGCA
GCCGAATATTGCGTGGTTATGGTTGGTATGTTGGGCGTTCTGGGGCAGAG
GAGTTTGGTACCAAAAGCCAGGCTGATGATGAATGGTTTTATGATTTTAT
GGGTCTTTTGTCGTAGCAGCATGCATGTGGAGACCATGATTAGCCAGTAT
AGATGATGAGAGGGAAAATCATAACTCACTCGCACTTCGTTTGGATGATG
TGATTTTTTCTTGCCTTCACGAGTAGCTTTTCCTTGTGTTTGTTCTTTTG
TTTCAATATCGTCGGTGACCTCGGTCGATCGCCGTAAAGATCTGTGTTTG
CTTGCGGTGCAGGGGTAGCGAGTGAGTCTAAACTAAACACATCTCTGCTG
TCTGTCTGTGTGTTGGTGGTACGTATGCCCGGTAGGTTGATTCCCAAGCT
TTGCACGTGAATCGTCAGTGTGTCAACCGTCAAATCAACAAATATTTTAT
GCACAAGTTTGTGTGGCAAAATCAAATCAAATAACCTCTGGGCAGGACTG
CGGGTGAGGGAATCTTTTTGCTCTTCCTCTGTATTTGTCGAGGAAGGTTA
GTTGGTTGTTGATTATCCCCGGAGTACGCACACGCGAGCCCCACTTTCGC
CGCCCTCCCTGGAGCTGTAGCTGCCGCGGTGGGTTGGCGGCGGGAGCTAG
TGTCAATGCCACAAATACATCATGTAGTGCAGAATATGGCACTAGTAGGT
CTCCTCCCTCTAGGGGGGGGGGGGGGGCGAAGGTA back to topCoding sequence (CDS) from alignment at H-paniculata_contig434:878..8612+ >mRNA_H-paniculata_contig434.11062.1 ID=mRNA_H-paniculata_contig434.11062.1|Name=mRNA_H-paniculata_contig434.11062.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig434:878..8612+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GGGGACAGGAGGGGAACATCGCCGCTACGCAGTCCGCTTGGGGGACAGGA GGGGAACATCGCCGCTACGCAGTCCGCTTGGGAGAAACTCTCAATCGCTT GGCGGAATAACGGGAGCGGAATCGTCGCCAGGGTCAGACCGGTCCAGCTT CGTCTCGAGGGTGGGGTCATACGCGCTGACGGATATTGGGGTTGCCGAAT CAGAACGCGATGCAATAGGGGCGGCGGGTAGGCGCGGCTTGTATTCGCCG ACTTCGACGGTGATGCGATCCACGGGAGAAACTCTCAATCGCTTGGCGGA ATAACGGGAGCGGAATCGTCGCCAGGGTCAGACCGGTCCAGCTTCGTCTC GAGGGTGGGGTCATACGCGCTGACGGATATTGGGGTTGCCGAATCAGAAC GCGATGCAATAGGGGCGGCGGGTAGGCGCGGCTTGTATTCGCCGACTTCG ACGGTGATGCGATCCACGGGCGTGAGCGAGCTGGGATCAGACACGCGTCT ATCTAGTGGTTCCCCGGGAGGATCCGATGGTGAATACAATTCTGATAGCC CTGGTGCTCAGAGCGGATGGGAGCGAGCATGGATGCGACAGCGAGACGAT GTGGGGGCGTGAGCGAGCTGGGATCAGACACGCGTCTATCTAGTGGTTCC CCGGGAGGATCCGATGGTGAATACAATTCTGATAGCCCTGGTGCTCAGAG CGGATGGGAGCGAGCATGGATGCGACAGCGAGACGATGTGGGGCAATTCA GGGGAGCTGGCGGACAGTGAGCAATTCAGGGGAGCTGGCGGACAGTGA back to top
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