prot_H-paniculata_contig4335.11053.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4335.11053.1
Unique Nameprot_H-paniculata_contig4335.11053.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length318
Homology
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BLAST of mRNA_H-paniculata_contig4335.11053.1 vs. uniprot
Match: A0A6H5KH38_9PHAE (UBX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH38_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.140e-33
Identity = 90/197 (45.69%), Postives = 121/197 (61.42%), Query Frame = 0 
Query:  122 GPVVPSRHASEAEERQRVLNKQRAVDANQVKQQRAQAKRRREQELAIWREQRDDAKQRKATGVARTSSGRTDGGGLSGAPGEADATGTSGTKADE-KSEAKPTDEA-AVLVMRLPDGTTVTNSFRRTATLGEVAAWLHTNNPSGGKLGGRDIELRCPFPPPGRAVAGADLNEITVEGIGLAPRGRVMVQFRYGLFVS 316
            GP VPS HA+EAE RQRV  KQR ++A Q KQ+R ++      ELAIW+EQ             +  + +T       +PGE  A G    +AD+ +  A    +A A++VMRLPDGT+ T+SF   ATL EV  WL +  P+ GKL  ++++LRCPFPPPGRA+AG +L+  TVE +GL PRGR+MVQF  G  + 
Sbjct:   52 GPSVPSLHATEAEHRQRVFEKQRELEAKQKKQERGESXXXXXXELAIWKEQXXXXXXXXGGXXGKGPAVQT-------SPGEGKARGGDADRADQGRGGACLGGQAEAMVVMRLPDGTSTTHSFGTAATLREVLTWLQSTEPTAGKLRSKELQLRCPFPPPGRAIAGDELDSSTVESVGLFPRGRLMVQFSDGATIK 241
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4335.11053.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KH38_9PHAE1.140e-3345.69UBX domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 148..179
NoneNo IPR availableGENE3D3.10.20.90coord: 216..308
e-value: 3.8E-8
score: 35.3
NoneNo IPR availableGENE3D1.10.8.10coord: 25..62
e-value: 1.2E-8
score: 36.5
IPR015940Ubiquitin-associated domainSMARTSM00165uba_6coord: 25..62
e-value: 8.5E-7
score: 38.6
IPR015940Ubiquitin-associated domainPFAMPF00627UBAcoord: 28..59
e-value: 1.9E-7
score: 30.8
IPR015940Ubiquitin-associated domainPROSITEPS50030UBAcoord: 23..63
score: 11.896
IPR001012UBX domainPROSITEPS50033UBXcoord: 222..307
score: 10.359
IPR009060UBA-like superfamilySUPERFAMILY46934UBA-likecoord: 23..64
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 157..308

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4335contigH-paniculata_contig4335:145..5304 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4335.11053.1mRNA_H-paniculata_contig4335.11053.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4335 145..5304 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4335.11053.1 ID=prot_H-paniculata_contig4335.11053.1|Name=mRNA_H-paniculata_contig4335.11053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=318bp
IDSNKYHQPNQQLLIMASAAMGEGSEGAVNQLVEAGFDRHAAEVALASAG
GNIDRAASLILSWDGATVPPPPVSQPIPRVPTIAGVASGDALRIRTGAAA
TAGGRMAPGEVPEALPPLPPAGPVVPSRHASEAEERQRVLNKQRAVDANQ
VKQQRAQAKRRREQELAIWREQRDDAKQRKATGVARTSSGRTDGGGLSGA
PGEADATGTSGTKADEKSEAKPTDEAAVLVMRLPDGTTVTNSFRRTATLG
EVAAWLHTNNPSGGKLGGRDIELRCPFPPPGRAVAGADLNEITVEGIGLA
PRGRVMVQFRYGLFVSH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015940UBA
IPR001012UBX_dom
IPR009060UBA-like_sf
IPR029071Ubiquitin-like_domsf