mRNA_H-paniculata_contig4335.11053.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4335.11053.1
Unique NamemRNA_H-paniculata_contig4335.11053.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4335.11053.1 vs. uniprot
Match: A0A6H5KH38_9PHAE (UBX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH38_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.140e-33
Identity = 90/197 (45.69%), Postives = 121/197 (61.42%), Query Frame = 1 
Query:  364 GPVVPSRHASEAEERQRVLNKQRAVDANQVKQQRAQAKRRREQELAIWREQRDDAKQRKATGVARTSSGRTDGGGLSGAPGEADATGTSGTKADE-KSEAKPTDEA-AVLVMRLPDGTTVTNSFRRTATLGEVAAWLHTNNPSGGKLGGRDIELRCPFPPPGRAVAGADLNEITVEGIGLAPRGRVMVQFRYGLFVS 948
            GP VPS HA+EAE RQRV  KQR ++A Q KQ+R ++      ELAIW+EQ             +  + +T       +PGE  A G    +AD+ +  A    +A A++VMRLPDGT+ T+SF   ATL EV  WL +  P+ GKL  ++++LRCPFPPPGRA+AG +L+  TVE +GL PRGR+MVQF  G  + 
Sbjct:   52 GPSVPSLHATEAEHRQRVFEKQRELEAKQKKQERGESXXXXXXELAIWKEQXXXXXXXXGGXXGKGPAVQT-------SPGEGKARGGDADRADQGRGGACLGGQAEAMVVMRLPDGTSTTHSFGTAATLREVLTWLQSTEPTAGKLRSKELQLRCPFPPPGRAIAGDELDSSTVESVGLFPRGRLMVQFSDGATIK 241
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4335.11053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KH38_9PHAE1.140e-3345.69UBX domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4335contigH-paniculata_contig4335:145..5304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size955
Cds size954
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4335.11053.1prot_H-paniculata_contig4335.11053.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4335 145..5304 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930316.3990197-CDS-H-paniculata_contig4335:144..3081622930316.3990197-CDS-H-paniculata_contig4335:144..308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4335 145..308 -
1691481238.6045992-CDS-H-paniculata_contig4335:144..3081691481238.6045992-CDS-H-paniculata_contig4335:144..308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4335 145..308 -
1622930316.446729-CDS-H-paniculata_contig4335:1370..14851622930316.446729-CDS-H-paniculata_contig4335:1370..1485Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4335 1371..1485 -
1691481238.613975-CDS-H-paniculata_contig4335:1370..14851691481238.613975-CDS-H-paniculata_contig4335:1370..1485Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4335 1371..1485 -
1622930316.4649613-CDS-H-paniculata_contig4335:1943..21261622930316.4649613-CDS-H-paniculata_contig4335:1943..2126Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4335 1944..2126 -
1691481238.6245277-CDS-H-paniculata_contig4335:1943..21261691481238.6245277-CDS-H-paniculata_contig4335:1943..2126Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4335 1944..2126 -
1622930316.4783816-CDS-H-paniculata_contig4335:2422..25311622930316.4783816-CDS-H-paniculata_contig4335:2422..2531Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4335 2423..2531 -
1691481238.6342165-CDS-H-paniculata_contig4335:2422..25311691481238.6342165-CDS-H-paniculata_contig4335:2422..2531Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4335 2423..2531 -
1622930316.4908113-CDS-H-paniculata_contig4335:3614..38831622930316.4908113-CDS-H-paniculata_contig4335:3614..3883Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4335 3615..3883 -
1691481238.6430602-CDS-H-paniculata_contig4335:3614..38831691481238.6430602-CDS-H-paniculata_contig4335:3614..3883Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4335 3615..3883 -
1622930316.5090199-CDS-H-paniculata_contig4335:5190..53041622930316.5090199-CDS-H-paniculata_contig4335:5190..5304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4335 5191..5304 -
1691481238.654054-CDS-H-paniculata_contig4335:5190..53041691481238.654054-CDS-H-paniculata_contig4335:5190..5304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4335 5191..5304 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4335.11053.1

>prot_H-paniculata_contig4335.11053.1 ID=prot_H-paniculata_contig4335.11053.1|Name=mRNA_H-paniculata_contig4335.11053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=318bp
IDSNKYHQPNQQLLIMASAAMGEGSEGAVNQLVEAGFDRHAAEVALASAG
GNIDRAASLILSWDGATVPPPPVSQPIPRVPTIAGVASGDALRIRTGAAA
TAGGRMAPGEVPEALPPLPPAGPVVPSRHASEAEERQRVLNKQRAVDANQ
VKQQRAQAKRRREQELAIWREQRDDAKQRKATGVARTSSGRTDGGGLSGA
PGEADATGTSGTKADEKSEAKPTDEAAVLVMRLPDGTTVTNSFRRTATLG
EVAAWLHTNNPSGGKLGGRDIELRCPFPPPGRAVAGADLNEITVEGIGLA
PRGRVMVQFRYGLFVSH*
back to top

mRNA from alignment at H-paniculata_contig4335:145..5304-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4335.11053.1 ID=mRNA_H-paniculata_contig4335.11053.1|Name=mRNA_H-paniculata_contig4335.11053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5160bp|location=Sequence derived from alignment at H-paniculata_contig4335:145..5304- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGATTCTAACAAGTACCACCAACCCAACCAGCAATTGCTCATCATGGC
TTCAGCCGCAATGGGAGAGGGGAGCGAGGGTGCGGTCAATCAGCTTGTGG
AAGCAGGTTTCGATGTGAGCTTTAACTGGTGGAAGATAGCTATTCTCATG
TCTTGCCATCCGCGCTACTGCTTGCATTATAGCACCTCTGCTAGTAATAG
TCAATGGAAGGAACCAGGTTGTAGCCGCTCCTGGGTATCGTGCGGCCTTG
GTGGGAGCCCCGCGAAACAAGCATAGGTGCTGGGGAGACACCTGTTGCGG
TGGGATAGCTGAGAGCGAGCTAGCTCGTGAAATTTTAGATGGTTTGGCAA
GCTACTCCCTCAGACTATTCATCTGCTGACCTACAGATGCCGGAACTACA
GATTCGACAGACGGAACTACAGTTGTCAGTACGCACAGGGCATAATAGGG
TATAGAACAGCAGTCCAGTTGCAGGCTGCTATGTGCGTACAACTGACCGT
GCAGTAGTCAAGATTGTAAGGGGAAGAAGCAGGGCCTGTGCATACTCACT
CGTCTATGGTTTATGTGCAGGCCATGACTGTGTGCGCAAGGGGCTACTGA
TTGTACTAGACATTGGTACTATATGTGCAAACAATTCCGCATACATGCCT
ATGCTCGTAGATATACTTACCTGTGCCTATAGGGCGGAGAGGAGGATAAA
AAATGATGGATTTTGGGTTGACAAAATGGTAGGGATCAGAAGTTATGTTT
CACTGGTGCTTCTGGAGCAACCTACGCATACTAGCAGATGAGAAGTTTAT
GTTGGTACAGTACAGTACAGTATCGATCTTGGTTGTAAGTGAGTTGGACC
GGTCAATAACAAAGTTCCTCTGTAGAAGCCCGTGTCAACCAACAGGATTT
TCTATCGACAGGCTGCCGCCTCCTGTACGAATCCGCGTCAAGAACCTCAA
AACACCTATTATAGTGAACCACTGGGCGTTGTGTCGTCCTTGACAAAGAT
TCGAAGATTCCTTTGTTGAAGGTGAAGATTCCAAATGGCAGTGGCGCTAT
GATTTTTAGCCTTTGCGCTCTGATCTCCACGTCTCCACACAGACCCTCCA
TACAGAATCCTCGGCTAAACTCAACCTCCGAAAAGCAAAAAAATGTTCAG
CAAGTATTGTTCAATCGGCCCGACGACACGTAACCACACACAGCTTTCTA
CTTCAATACGTTAGATGAGTAAGCGTTGAAAATCGTGAATATTTTCGAAA
TTAACAGCCAATTTGACGAGTTTTTTTCATGTTGTGGTTAAAGTTTGCTG
ACGGTCGTATAGGTAGCCGTGAGTGCAGGATACATAACCCCCACATTATA
TTTATGCGTACTTTAGATTCGACGTATGTTGCCTCCCCCCCCCCGACCAC
TACCGCCGTACCCTCCAACAGCGCCACGCGGCAGAAGTGGCTCTCGCATC
GGCCGGCGGCAACATCGATCGTGCGGCCTCCTTGATTCTGTCGTGGGATG
GAGCGACCGTGCCCCCGCCCCCTGTTTCACAGCCGATTCCCCGAGTCCCC
ACAATTGCTGGCGTCGCGTCCGGGGATGCGCTGAGGATTCGCACGGGAGC
GGCGGCGACGGCGGGCGGGAGGATGGCGCCGGGAGAGGTTCCGGAGGCAC
TCCCGCCGTTACCACCTGCAGGGCCGGTTGTTCCTTCCCGGTGAGTAGCG
ACTTGTTTTGATACGTGGTATGATGAATCTACCAGTACGTCGTGCTTCGA
ATGAAGCGCCTCTGCGGTTATCGCCGTGCCATTGTCAAATGTTTCTTCTC
TTTGCTGTAAACAAAATAAGGGGGAAGACGTCAACTCGGTGACTCCTGCA
TTTTTTTTTTCAAGTTGACAGAAGGAACATTTTTTTTTCCATAGAAGGCC
GAACGCCGAGTTACTGATCACTACGTTACCAGTCCTGTGGTCATGTTCCG
ATTGCCACGACTATGACTGTGGTTACAAGCTGCCTGCTGCCGTGTCTTTG
TGTCATTGCGCACAAGAGGACAGCACATATGCATCGGCTTCCTCTCTCTA
CCGACCTCTTGAGACATGTCGGTACCTGCCAACGTCTTTCCTTCTCTCCA
TTGTGTTGCCATTCTCGTGGTATCACGACGCAGATATTGGGCTACAATAG
TACACGAACTGTACCACATTCGTACGACATTCTGTATTATTGTCGCCGTG
CGCAACTCCGCTGACTATATCATACTATTTGCGCTATCCAGCTGGGTTCC
AGCGCTCGATGGAACCTATGTATGCACTGCAGTGTTAAGTCCATTGCCTC
CATATCACGCACACAAGGTGTTACGGCTGCTGTACCAAACCAGCCATTGA
CATGGGTGAAATTGAAAATATTCACTGTCGACCCCTTTCGCATCCCACGT
CCCTCGAACCAACACTTGTTTATCGTGTACTCATTTTTCATATTTGCCAG
CACTGTAGTAATAGTAATGATGCTCGGTTGGGCCGCTCTTCTACATAGTC
AAGCGGTATGTATGTGTTGAGGTATTGTAGAGGGTGACCATGCAACCAGA
GAATTATATATATATATTTATATATTGTCCAGTACATGAGCCCGATTGTG
TCCGATCGCCGCTATCCGCTAGGTTGCATTGTGTACGTTGTAATAGAGGA
TGGTCATACGCTAACAACGAGTAACGTAAATGACAGCAAGATAATGGAAA
CGTTCCTGTGTCTCTAATCTCACGTGCAGACCCCGTTTGTGTTGTTGGCG
ATTGGTTGTGACTCGTGCTTAAGGCACGCGAGCGAGGCAGAAGAGAGACA
GCGCGTTTTGAATAAGCAAAGAGCCGTGGATGCGAATCAGGTTAAGCAAC
AAAGAGCGCAAGCGAAGCGACGTCGCGAGCAGGTGTGTTGGAATGCGCAT
CATGTCGTTTGTCACTGTGTATACCACGCTTGCTGTTATGTTCTTGTTCT
GGTAAGCACTATGCTCGCACGCAACGAATATGTTTGGCCTGTCTTGTGCA
CAAGCTATTGTTGTTCAGTGTGTCATTATCGTCATCGTCGTTGTTAATGC
CGTCATGATTTTTTTTTTTTTGTCATTGAAAATTGTTGTTGCTGTTGCCG
CTGTTGCTCATGCACTTCGATCTCCTTACCGTGTGTGTACCTACTTTACT
GCCACGGTCCGTCGTCGATTGTCCCCAGGAGCTGGCCATATGGCGAGAGC
AGCGTGATGACGCCAAGCAACGCAAGGCAACTGGCGTGGCACGGACATCT
TCCGGCAGGACTGACGGTGGTGGCCTCAGCGGTGCTCCTGGGGAAGCAGA
TGCGACAGGGACAAGCGGAACAAAGGCGGATGAGAAGAGCGAGGCAAAAC
CTACCGATGAGGTGCACATGGCCATGTTCCAATGTGGTCGTGCAGTTTGG
TATGGTTATTGCATGGATGAATTTTTCCTCTTTCGTTTTGTTGCTTTCGC
TGGTTTGGCTGTATCGATCTATTTTTGTATTTTGTGATCTTCGTTCGTAT
TGCGGAAGGTGTGTGAAATATTTTTTTGTTTCTCCATGGTTCTTTTTTTT
TTTCTACTGTTTTTTTCTCGTCTTTTCACCCCAAAAAAATATTTTTACGC
GCACGTTTCACAACATACAAAACAAGTGACAAAGCTGATGTATACCCTTG
CGCCTAACAAGAATAAGTAAGTGAGACAACGCTGAAATTAAGCTCTCAAC
GGTCAAATAAAAACGGACACCTCCCCCCTCCAAAACAGTACCGACTTGTT
CTATATCTGGTATGTAAATATCTGTTGTTTTTCTCGCGTTGTTTTTTACC
TATCACTCTGTGGAAGCAGGCAGCAGTGCTGGTGATGAGGCTCCCAGACG
GAACGACGGTTACAAATTCGTTTCGTCGGACCGCAACTCTCGGGGAGGTG
GCGGCTTGGCTGCATACAAACAATCCCAGTGGTGGTGAGCTTGTGTGCCG
GTCGGTGGTGTAGGCTGTCTAGTGCGTGACTTGGAGATGGTCGGCTTTGA
TGTACATGAAAGTCCTTTCAAGAAGCAGTCAAAGGAGGAATCGTAAAGGA
CATTTGGATATTATGATATTTAGATTACTTTTCGCGGTGTTTTGATACAA
GGGTACAGTGTTTGAGAGTCGCTGATATTGAAAATATTGATTATCATGAC
CGTTGTGATTCTTGCCCATTTTGAGTTTTTTTGTGCCGTCATCGCGACAC
ATCAGGGTCTTCGTCGTACTGTAGGGGTAATAGCTTGCATGGACGATGGG
TGTACCTCCCGTTTTTCACACGGTACCTACCATATATTAGAGAAATTTTG
CTGGAAAGTGTTGAATTTAGATTCAGAAAGGAGGTGGCGCCCGAGATAAG
TCTTGCCAACTTAGAACATCTATATATCTACAGTTTATTCTTGTCGTCAT
TATATAGTACGATATTAGTAAGGTGGTGGTCGTCATCAACACCGTGCTTG
TCGATTCGGAACCTCTTTTCAATTCTGTATCCAAGTGACTCCTGAACAGT
GAATCTTTATGGGAGCGCAGCGAGCAATGGTGTTTGCTCCGCAAGCCCCC
ACTGTGGACGCAGCCGGTGCATGGTTCGAGGACAAGCATGAAGTGCATGG
CCATCCCCGTGGTCGTACTCTACTATCTAATGACTACTAGTTACTAAAAT
AAAGGAGAAAGAAACATGGGTGTGCTTAATGATCGGCTGAAAACAACATC
GCGAAGTTAGCTGGAAACGCTGCAGAAGTCAGGCGTAAACGTTTGCAGCT
TTTTTTACGTTTCATATCACATATATCCCCAATGAATGTGCCCTACACTC
GTGGTTTCCTTCAATCCCTTTGTTTTTCACGGTGTTTTGTACTGTTCATA
CAGGAAATATTCGTCGATACTTGAGTTAGACGGTCATTGCGCACAAAGAC
GTGACTGTGTATGCACCATGTGTTTGTTTTTTCCCTCTGTCGTGGCTGCC
TCTTCCGTTGCGTGTTTTGACTCTCCCGGTGCTCATGTGCCGGCAGGGAA
GCTTGGGGGAAGGGATATAGAGCTACGCTGTCCTTTCCCTCCGCCGGGAC
GTGCCGTAGCGGGAGCTGACCTGAACGAGATCACCGTCGAGGGCATCGGG
CTTGCTCCTAGGGGAAGAGTCATGGTTCAATTCAGGTATGGGTTGTTTGT
TTCCCATTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4335:145..5304-

>mRNA_H-paniculata_contig4335.11053.1 ID=mRNA_H-paniculata_contig4335.11053.1|Name=mRNA_H-paniculata_contig4335.11053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1908bp|location=Sequence derived from alignment at H-paniculata_contig4335:145..5304- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGATTCTAACAAGTACCACCAACCCAACCAGCAATTGCTCATCATGGC
TTCAGCCGCAATGGGAGAGGGGAGCGAGGGTGCGGTCAATCAGCTTGTGG
AAGCAGGTTTCGATATTGATTCTAACAAGTACCACCAACCCAACCAGCAA
TTGCTCATCATGGCTTCAGCCGCAATGGGAGAGGGGAGCGAGGGTGCGGT
CAATCAGCTTGTGGAAGCAGGTTTCGATCGCCACGCGGCAGAAGTGGCTC
TCGCATCGGCCGGCGGCAACATCGATCGTGCGGCCTCCTTGATTCTGTCG
TGGGATGGAGCGACCGTGCCCCCGCCCCCTGTTTCACAGCCGATTCCCCG
AGTCCCCACAATTGCTGGCGTCGCGTCCGGGGATGCGCTGAGGATTCGCA
CGGGAGCGGCGGCGACGGCGGGCGGGAGGATGGCGCCGGGAGAGGTTCCG
GAGGCACTCCCGCCGTTACCACCTGCAGGGCCGGTTGTTCCTTCCCGCGC
CACGCGGCAGAAGTGGCTCTCGCATCGGCCGGCGGCAACATCGATCGTGC
GGCCTCCTTGATTCTGTCGTGGGATGGAGCGACCGTGCCCCCGCCCCCTG
TTTCACAGCCGATTCCCCGAGTCCCCACAATTGCTGGCGTCGCGTCCGGG
GATGCGCTGAGGATTCGCACGGGAGCGGCGGCGACGGCGGGCGGGAGGAT
GGCGCCGGGAGAGGTTCCGGAGGCACTCCCGCCGTTACCACCTGCAGGGC
CGGTTGTTCCTTCCCGGCACGCGAGCGAGGCAGAAGAGAGACAGCGCGTT
TTGAATAAGCAAAGAGCCGTGGATGCGAATCAGGTTAAGCAACAAAGAGC
GCAAGCGAAGCGACGTCGCGAGCAGGCACGCGAGCGAGGCAGAAGAGAGA
CAGCGCGTTTTGAATAAGCAAAGAGCCGTGGATGCGAATCAGGTTAAGCA
ACAAAGAGCGCAAGCGAAGCGACGTCGCGAGCAGGAGCTGGCCATATGGC
GAGAGCAGCGTGATGACGCCAAGCAACGCAAGGCAACTGGCGTGGCACGG
ACATCTTCCGGCAGGACTGACGGTGGTGGCCTCAGCGGTGCTCCTGGGGA
AGCAGATGCGACAGGGACAAGCGGAACAAAGGCGGATGAGAAGAGCGAGG
CAAAACCTACCGATGAGGAGCTGGCCATATGGCGAGAGCAGCGTGATGAC
GCCAAGCAACGCAAGGCAACTGGCGTGGCACGGACATCTTCCGGCAGGAC
TGACGGTGGTGGCCTCAGCGGTGCTCCTGGGGAAGCAGATGCGACAGGGA
CAAGCGGAACAAAGGCGGATGAGAAGAGCGAGGCAAAACCTACCGATGAG
GCAGCAGTGCTGGTGATGAGGCTCCCAGACGGAACGACGGTTACAAATTC
GTTTCGTCGGACCGCAACTCTCGGGGAGGTGGCGGCTTGGCTGCATACAA
ACAATCCCAGTGGTGGCAGCAGTGCTGGTGATGAGGCTCCCAGACGGAAC
GACGGTTACAAATTCGTTTCGTCGGACCGCAACTCTCGGGGAGGTGGCGG
CTTGGCTGCATACAAACAATCCCAGTGGTGGGAAGCTTGGGGGAAGGGAT
ATAGAGCTACGCTGTCCTTTCCCTCCGCCGGGACGTGCCGTAGCGGGAGC
TGACCTGAACGAGATCACCGTCGAGGGCATCGGGCTTGCTCCTAGGGGAA
GAGTCATGGTTCAATTCAGGTATGGGTTGTTTGTTTCCCATTAGGGAAGC
TTGGGGGAAGGGATATAGAGCTACGCTGTCCTTTCCCTCCGCCGGGACGT
GCCGTAGCGGGAGCTGACCTGAACGAGATCACCGTCGAGGGCATCGGGCT
TGCTCCTAGGGGAAGAGTCATGGTTCAATTCAGGTATGGGTTGTTTGTTT
CCCATTAG
back to top