mRNA_H-paniculata_contig43342.11052.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig43342.11052.1 vs. uniprot
Match: A0A5E4GCQ9_PRUDU (PREDICTED: poly n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GCQ9_PRUDU) HSP 1 Score: 59.3 bits (142), Expect = 2.720e-8 Identity = 33/101 (32.67%), Postives = 54/101 (53.47%), Query Frame = 1
Query: 16 NTWVADPGASNHMTNNLAKMYDIRKPVTGEDVVMLGNGSIIVVEFLGKLNLIFHSPTDVPTTIQVSYLPELNFNLFSLHKI--QGNCSVLLDAAGTHIGDN 312
N W+AD GASNH+T N++ + P TG + + +G+G+ + + G I H+ + V + P++ NL S+HK +CS++ D G I DN
Sbjct: 23 NIWLADSGASNHVTLNMSNLCH-SSPYTGSETLRVGDGNSLPISNTGST--ILHTSNAKFHLLNVLHTPQVAHNLLSVHKFVSDNHCSLIFDEIGVSIKDN 120
BLAST of mRNA_H-paniculata_contig43342.11052.1 vs. uniprot
Match: A0A5E4GDL5_PRUDU (PREDICTED: poly (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GDL5_PRUDU) HSP 1 Score: 59.7 bits (143), Expect = 3.060e-8 Identity = 34/98 (34.69%), Postives = 57/98 (58.16%), Query Frame = 1
Query: 22 WVADPGASNHMTNNLAKMYDIRKPVTGEDVVMLGNGSIIVVEFLGKLNLIFHSPTDVPTTIQVSYLPELNFNLFSLHKI--QGNCSVLLDAAGTHIGD 309
W+AD GAS+HMTN L+ M +I P T D + +GNG + + +G +L S + T + ++P+L NL S++++ NC V+ DA+ ++ D
Sbjct: 14 WIADSGASHHMTNTLSNMTNIA-PYTSGDTIKIGNGEGLSISHIGTASL---SGLHLNT---IYHVPQLATNLLSVYQLCKDNNCWVIFDASNVYVQD 104
BLAST of mRNA_H-paniculata_contig43342.11052.1 vs. uniprot
Match: A0A5E4FW64_PRUDU (PREDICTED: Retrovirus-related Pol poly from n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4FW64_PRUDU) HSP 1 Score: 59.7 bits (143), Expect = 3.680e-8 Identity = 34/98 (34.69%), Postives = 57/98 (58.16%), Query Frame = 1
Query: 22 WVADPGASNHMTNNLAKMYDIRKPVTGEDVVMLGNGSIIVVEFLGKLNLIFHSPTDVPTTIQVSYLPELNFNLFSLHKI--QGNCSVLLDAAGTHIGD 309
W+AD GAS+HMTN L+ M +I P T D + +GNG + + +G +L S + T + ++P+L NL S++++ NC V+ DA+ ++ D
Sbjct: 14 WIADSGASHHMTNTLSNMTNIA-PYTSGDTIKIGNGEGLSISHIGTASL---SGLHLNT---IYHVPQLATNLLSVYQLCKDNNCWVIFDASNVYVQD 104
BLAST of mRNA_H-paniculata_contig43342.11052.1 vs. uniprot
Match: A0A5E4G702_PRUDU (PREDICTED: Retrovirus-related Pol poly from (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4G702_PRUDU) HSP 1 Score: 59.3 bits (142), Expect = 5.150e-8 Identity = 32/101 (31.68%), Postives = 56/101 (55.45%), Query Frame = 1
Query: 16 NTWVADPGASNHMTNNLAKMYDIRKPVTGEDVVMLGNGSIIVVEFLGKLNLIFHSPTDVPTTIQVSYLPELNFNLFSLHKI--QGNCSVLLDAAGTHIGDN 312
N W+AD GASNH+T+N++ + P TG + + +G+G+ + + + I H+ + V ++P++ NL S+HK +CS++ D G I DN
Sbjct: 116 NLWLADSGASNHVTSNMSNLGH-SSPYTGSETLRVGDGNSLPISH--TRSTILHTSNAKFHLLNVLHVPQVAHNLLSVHKFVSDNHCSLIFDEIGVSIKDN 213
BLAST of mRNA_H-paniculata_contig43342.11052.1 vs. uniprot
Match: A0A8K0DN47_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0DN47_9COLE) HSP 1 Score: 58.9 bits (141), Expect = 6.950e-8 Identity = 34/98 (34.69%), Postives = 52/98 (53.06%), Query Frame = 1
Query: 4 INNGNTWVADPGASNHMTNN---LAKMYDIRKPVTGEDVVMLGNGSIIVVEFLGKLNLIFHSPTD-VPTTIQ-VSYLPELNFNLFSLHKIQGNCSVLL 282
N+ TW+AD GAS HM+N Y+ KP + +GNGS+I GK+++I D +PT + V Y+P++ FNLFS+ C ++
Sbjct: 285 FNDDETWIADSGASEHMSNQKEWFENYYEFDKPTE----IKIGNGSVINAHGKGKISVIAFDGQDYIPTELNDVLYVPDIKFNLFSIGAALDKCYTMM 378
BLAST of mRNA_H-paniculata_contig43342.11052.1 vs. uniprot
Match: A0A6G0X3B5_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3B5_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 1.550e-6 Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = 1
Query: 1 AINNGNTWVADPGASNHMTNNLAKMYDIRKPVTGEDVVMLGNGSIIVVEFLGKLNLIFHSPTD-VPTTIQ-VSYLPELNFNLFSLHKI 258
A+ N WV D GAS+H NN + ++ +P TG VV NG + +E G ++L ++P+ V +Q VSY+P L +NLFSL ++
Sbjct: 290 ALEASNEWVIDSGASDHFCNNSSWFTNL-EPSTG--VVRAANGGDMAIEGCGSIHLEMNTPSGIVEVELQNVSYMPSLQYNLFSLSRV 374
BLAST of mRNA_H-paniculata_contig43342.11052.1 vs. uniprot
Match: A0A2P6R9W2_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6R9W2_ROSCH) HSP 1 Score: 54.7 bits (130), Expect = 2.130e-6 Identity = 30/99 (30.30%), Postives = 56/99 (56.57%), Query Frame = 1
Query: 19 TWVADPGASNHMTNNLAKMYDIRKPVTGEDVVMLGNGSIIVVEFLGKLNLIFHSPTDVPTTIQVSYLPELNFNLFSLHKI--QGNCSVLLDAAGTHIGD 309
TW+AD GAS H+T +L+ + ++ P TG + +GNG+ + + +G + H+P+ V ++PE+ NL S+++ +C+ +L G+ I D
Sbjct: 380 TWLADSGASQHVTPDLSHLSEVT-PYTGNAKLTVGNGNNLQIAHIGSS--LMHTPSASFKLTNVLHVPEITHNLLSVNRFVTDNDCAFVLTPTGSMIKD 475
BLAST of mRNA_H-paniculata_contig43342.11052.1 vs. uniprot
Match: A0A5N5F2G3_9ROSA (Integrase catalytic domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5F2G3_9ROSA) HSP 1 Score: 54.3 bits (129), Expect = 3.020e-6 Identity = 32/92 (34.78%), Postives = 49/92 (53.26%), Query Frame = 1
Query: 22 WVADPGASNHMTNNLAKMYDIRKPVTGEDVVMLGNGSIIVVEFLGKLNLIFHSPTDVPTTIQ-VSYLPELNFNLFSLHKI--QGNCSVLLDA 288
W+AD GASNHMT +L + + P ++V NG + V +G + P+ P + V Y+P+L NL S+HK+ NC ++ DA
Sbjct: 316 WLADSGASNHMTADLQNL-SLASPYPTTELVQTANGEGLTVSHIGSSVI---KPSTYPIKLNSVLYVPQLTHNLLSVHKLCLDNNCWLIFDA 403
BLAST of mRNA_H-paniculata_contig43342.11052.1 vs. uniprot
Match: A0A5N5G4I9_9ROSA (Integrase catalytic domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5G4I9_9ROSA) HSP 1 Score: 53.1 bits (126), Expect = 7.670e-6 Identity = 30/91 (32.97%), Postives = 48/91 (52.75%), Query Frame = 1
Query: 22 WVADPGASNHMTNNLAKMYDIRKPVTGEDVVMLGNGSIIVVEFLGKLNLIFHSPTDVPTTIQVSYLPELNFNLFSLHK--IQGNCSVLLDA 288
W+AD GA+NHMT +L+ + + P V NG + V +G + H+P V Y+P+L+ NL S+H+ + NC ++ DA
Sbjct: 301 WLADSGATNHMTTDLSNLT-LASPYPTNKTVQTANGEGLRVSHVGST--VIHTPVHPIQLNSVLYVPKLSQNLLSVHRMCLDNNCWLIFDA 388
BLAST of mRNA_H-paniculata_contig43342.11052.1 vs. uniprot
Match: A0A2I0XGT8_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0XGT8_9ASPA) HSP 1 Score: 53.1 bits (126), Expect = 7.730e-6 Identity = 31/98 (31.63%), Postives = 55/98 (56.12%), Query Frame = 1
Query: 22 WVADPGASNHMTNNLAKMYDIRKPVTGEDVVMLGNGSIIVVEFLGKLNLIFHSPTDVPTTIQVSYLPELNFNLFSLHKI--QGNCSVLLDAAGTHIGD 309
W D GAS+H+T++ ++ + + P G V+LGNG+ + ++ G N I +PT +++ +P L+FNL S+H++ NC + + G I D
Sbjct: 299 WFLDSGASSHLTSDPNQIQNAQ-PYNGSSKVVLGNGTQLPIQNTG--NGILPTPTGNLQLSKLNLVPNLSFNLLSVHRLTSDNNCLITFSSFGYEIKD 393 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43342.11052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig43342.11052.1 >prot_H-paniculata_contig43342.11052.1 ID=prot_H-paniculata_contig43342.11052.1|Name=mRNA_H-paniculata_contig43342.11052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp AINNGNTWVADPGASNHMTNNLAKMYDIRKPVTGEDVVMLGNGSIIVVEFback to top mRNA from alignment at H-paniculata_contig43342:1341..1658+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig43342.11052.1 ID=mRNA_H-paniculata_contig43342.11052.1|Name=mRNA_H-paniculata_contig43342.11052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=318bp|location=Sequence derived from alignment at H-paniculata_contig43342:1341..1658+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig43342:1341..1658+ >mRNA_H-paniculata_contig43342.11052.1 ID=mRNA_H-paniculata_contig43342.11052.1|Name=mRNA_H-paniculata_contig43342.11052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig43342:1341..1658+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |