mRNA_H-paniculata_contig43342.11052.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43342.11052.1
Unique NamemRNA_H-paniculata_contig43342.11052.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig43342.11052.1 vs. uniprot
Match: A0A5E4GCQ9_PRUDU (PREDICTED: poly n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GCQ9_PRUDU)

HSP 1 Score: 59.3 bits (142), Expect = 2.720e-8
Identity = 33/101 (32.67%), Postives = 54/101 (53.47%), Query Frame = 1
Query:   16 NTWVADPGASNHMTNNLAKMYDIRKPVTGEDVVMLGNGSIIVVEFLGKLNLIFHSPTDVPTTIQVSYLPELNFNLFSLHKI--QGNCSVLLDAAGTHIGDN 312
            N W+AD GASNH+T N++ +     P TG + + +G+G+ + +   G    I H+       + V + P++  NL S+HK     +CS++ D  G  I DN
Sbjct:   23 NIWLADSGASNHVTLNMSNLCH-SSPYTGSETLRVGDGNSLPISNTGST--ILHTSNAKFHLLNVLHTPQVAHNLLSVHKFVSDNHCSLIFDEIGVSIKDN 120          
BLAST of mRNA_H-paniculata_contig43342.11052.1 vs. uniprot
Match: A0A5E4GDL5_PRUDU (PREDICTED: poly (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GDL5_PRUDU)

HSP 1 Score: 59.7 bits (143), Expect = 3.060e-8
Identity = 34/98 (34.69%), Postives = 57/98 (58.16%), Query Frame = 1
Query:   22 WVADPGASNHMTNNLAKMYDIRKPVTGEDVVMLGNGSIIVVEFLGKLNLIFHSPTDVPTTIQVSYLPELNFNLFSLHKI--QGNCSVLLDAAGTHIGD 309
            W+AD GAS+HMTN L+ M +I  P T  D + +GNG  + +  +G  +L   S   + T   + ++P+L  NL S++++    NC V+ DA+  ++ D
Sbjct:   14 WIADSGASHHMTNTLSNMTNIA-PYTSGDTIKIGNGEGLSISHIGTASL---SGLHLNT---IYHVPQLATNLLSVYQLCKDNNCWVIFDASNVYVQD 104          
BLAST of mRNA_H-paniculata_contig43342.11052.1 vs. uniprot
Match: A0A5E4FW64_PRUDU (PREDICTED: Retrovirus-related Pol poly from n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4FW64_PRUDU)

HSP 1 Score: 59.7 bits (143), Expect = 3.680e-8
Identity = 34/98 (34.69%), Postives = 57/98 (58.16%), Query Frame = 1
Query:   22 WVADPGASNHMTNNLAKMYDIRKPVTGEDVVMLGNGSIIVVEFLGKLNLIFHSPTDVPTTIQVSYLPELNFNLFSLHKI--QGNCSVLLDAAGTHIGD 309
            W+AD GAS+HMTN L+ M +I  P T  D + +GNG  + +  +G  +L   S   + T   + ++P+L  NL S++++    NC V+ DA+  ++ D
Sbjct:   14 WIADSGASHHMTNTLSNMTNIA-PYTSGDTIKIGNGEGLSISHIGTASL---SGLHLNT---IYHVPQLATNLLSVYQLCKDNNCWVIFDASNVYVQD 104          
BLAST of mRNA_H-paniculata_contig43342.11052.1 vs. uniprot
Match: A0A5E4G702_PRUDU (PREDICTED: Retrovirus-related Pol poly from (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4G702_PRUDU)

HSP 1 Score: 59.3 bits (142), Expect = 5.150e-8
Identity = 32/101 (31.68%), Postives = 56/101 (55.45%), Query Frame = 1
Query:   16 NTWVADPGASNHMTNNLAKMYDIRKPVTGEDVVMLGNGSIIVVEFLGKLNLIFHSPTDVPTTIQVSYLPELNFNLFSLHKI--QGNCSVLLDAAGTHIGDN 312
            N W+AD GASNH+T+N++ +     P TG + + +G+G+ + +      + I H+       + V ++P++  NL S+HK     +CS++ D  G  I DN
Sbjct:  116 NLWLADSGASNHVTSNMSNLGH-SSPYTGSETLRVGDGNSLPISH--TRSTILHTSNAKFHLLNVLHVPQVAHNLLSVHKFVSDNHCSLIFDEIGVSIKDN 213          
BLAST of mRNA_H-paniculata_contig43342.11052.1 vs. uniprot
Match: A0A8K0DN47_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0DN47_9COLE)

HSP 1 Score: 58.9 bits (141), Expect = 6.950e-8
Identity = 34/98 (34.69%), Postives = 52/98 (53.06%), Query Frame = 1
Query:    4 INNGNTWVADPGASNHMTNN---LAKMYDIRKPVTGEDVVMLGNGSIIVVEFLGKLNLIFHSPTD-VPTTIQ-VSYLPELNFNLFSLHKIQGNCSVLL 282
             N+  TW+AD GAS HM+N        Y+  KP      + +GNGS+I     GK+++I     D +PT +  V Y+P++ FNLFS+      C  ++
Sbjct:  285 FNDDETWIADSGASEHMSNQKEWFENYYEFDKPTE----IKIGNGSVINAHGKGKISVIAFDGQDYIPTELNDVLYVPDIKFNLFSIGAALDKCYTMM 378          
BLAST of mRNA_H-paniculata_contig43342.11052.1 vs. uniprot
Match: A0A6G0X3B5_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3B5_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.550e-6
Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = 1
Query:    1 AINNGNTWVADPGASNHMTNNLAKMYDIRKPVTGEDVVMLGNGSIIVVEFLGKLNLIFHSPTD-VPTTIQ-VSYLPELNFNLFSLHKI 258
            A+   N WV D GAS+H  NN +   ++ +P TG  VV   NG  + +E  G ++L  ++P+  V   +Q VSY+P L +NLFSL ++
Sbjct:  290 ALEASNEWVIDSGASDHFCNNSSWFTNL-EPSTG--VVRAANGGDMAIEGCGSIHLEMNTPSGIVEVELQNVSYMPSLQYNLFSLSRV 374          
BLAST of mRNA_H-paniculata_contig43342.11052.1 vs. uniprot
Match: A0A2P6R9W2_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6R9W2_ROSCH)

HSP 1 Score: 54.7 bits (130), Expect = 2.130e-6
Identity = 30/99 (30.30%), Postives = 56/99 (56.57%), Query Frame = 1
Query:   19 TWVADPGASNHMTNNLAKMYDIRKPVTGEDVVMLGNGSIIVVEFLGKLNLIFHSPTDVPTTIQVSYLPELNFNLFSLHKI--QGNCSVLLDAAGTHIGD 309
            TW+AD GAS H+T +L+ + ++  P TG   + +GNG+ + +  +G    + H+P+       V ++PE+  NL S+++     +C+ +L   G+ I D
Sbjct:  380 TWLADSGASQHVTPDLSHLSEVT-PYTGNAKLTVGNGNNLQIAHIGSS--LMHTPSASFKLTNVLHVPEITHNLLSVNRFVTDNDCAFVLTPTGSMIKD 475          
BLAST of mRNA_H-paniculata_contig43342.11052.1 vs. uniprot
Match: A0A5N5F2G3_9ROSA (Integrase catalytic domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5F2G3_9ROSA)

HSP 1 Score: 54.3 bits (129), Expect = 3.020e-6
Identity = 32/92 (34.78%), Postives = 49/92 (53.26%), Query Frame = 1
Query:   22 WVADPGASNHMTNNLAKMYDIRKPVTGEDVVMLGNGSIIVVEFLGKLNLIFHSPTDVPTTIQ-VSYLPELNFNLFSLHKI--QGNCSVLLDA 288
            W+AD GASNHMT +L  +  +  P    ++V   NG  + V  +G   +    P+  P  +  V Y+P+L  NL S+HK+    NC ++ DA
Sbjct:  316 WLADSGASNHMTADLQNL-SLASPYPTTELVQTANGEGLTVSHIGSSVI---KPSTYPIKLNSVLYVPQLTHNLLSVHKLCLDNNCWLIFDA 403          
BLAST of mRNA_H-paniculata_contig43342.11052.1 vs. uniprot
Match: A0A5N5G4I9_9ROSA (Integrase catalytic domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5G4I9_9ROSA)

HSP 1 Score: 53.1 bits (126), Expect = 7.670e-6
Identity = 30/91 (32.97%), Postives = 48/91 (52.75%), Query Frame = 1
Query:   22 WVADPGASNHMTNNLAKMYDIRKPVTGEDVVMLGNGSIIVVEFLGKLNLIFHSPTDVPTTIQVSYLPELNFNLFSLHK--IQGNCSVLLDA 288
            W+AD GA+NHMT +L+ +  +  P      V   NG  + V  +G    + H+P        V Y+P+L+ NL S+H+  +  NC ++ DA
Sbjct:  301 WLADSGATNHMTTDLSNLT-LASPYPTNKTVQTANGEGLRVSHVGST--VIHTPVHPIQLNSVLYVPKLSQNLLSVHRMCLDNNCWLIFDA 388          
BLAST of mRNA_H-paniculata_contig43342.11052.1 vs. uniprot
Match: A0A2I0XGT8_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0XGT8_9ASPA)

HSP 1 Score: 53.1 bits (126), Expect = 7.730e-6
Identity = 31/98 (31.63%), Postives = 55/98 (56.12%), Query Frame = 1
Query:   22 WVADPGASNHMTNNLAKMYDIRKPVTGEDVVMLGNGSIIVVEFLGKLNLIFHSPTDVPTTIQVSYLPELNFNLFSLHKI--QGNCSVLLDAAGTHIGD 309
            W  D GAS+H+T++  ++ + + P  G   V+LGNG+ + ++  G  N I  +PT      +++ +P L+FNL S+H++    NC +   + G  I D
Sbjct:  299 WFLDSGASSHLTSDPNQIQNAQ-PYNGSSKVVLGNGTQLPIQNTG--NGILPTPTGNLQLSKLNLVPNLSFNLLSVHRLTSDNNCLITFSSFGYEIKD 393          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43342.11052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A5E4GCQ9_PRUDU2.720e-832.67PREDICTED: poly n=1 Tax=Prunus dulcis TaxID=3755 R... [more]
A0A5E4GDL5_PRUDU3.060e-834.69PREDICTED: poly (Fragment) n=1 Tax=Prunus dulcis T... [more]
A0A5E4FW64_PRUDU3.680e-834.69PREDICTED: Retrovirus-related Pol poly from n=1 Ta... [more]
A0A5E4G702_PRUDU5.150e-831.68PREDICTED: Retrovirus-related Pol poly from (Fragm... [more]
A0A8K0DN47_9COLE6.950e-834.69Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A6G0X3B5_9STRA1.550e-638.64Integrase catalytic domain-containing protein n=1 ... [more]
A0A2P6R9W2_ROSCH2.130e-630.30Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A5N5F2G3_9ROSA3.020e-634.78Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N5G4I9_9ROSA7.670e-632.97Integrase catalytic domain-containing protein n=1 ... [more]
A0A2I0XGT8_9ASPA7.730e-631.63Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43342contigH-paniculata_contig43342:1341..1658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930316.3615081-CDS-H-paniculata_contig43342:1340..16581622930316.3615081-CDS-H-paniculata_contig43342:1340..1658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43342 1341..1658 +
1691481238.593208-CDS-H-paniculata_contig43342:1340..16581691481238.593208-CDS-H-paniculata_contig43342:1340..1658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43342 1341..1658 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43342.11052.1prot_H-paniculata_contig43342.11052.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43342 1341..1658 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43342.11052.1

>prot_H-paniculata_contig43342.11052.1 ID=prot_H-paniculata_contig43342.11052.1|Name=mRNA_H-paniculata_contig43342.11052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
AINNGNTWVADPGASNHMTNNLAKMYDIRKPVTGEDVVMLGNGSIIVVEF
LGKLNLIFHSPTDVPTTIQVSYLPELNFNLFSLHKIQGNCSVLLDAAGTH
IGDNLS
back to top

mRNA from alignment at H-paniculata_contig43342:1341..1658+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43342.11052.1 ID=mRNA_H-paniculata_contig43342.11052.1|Name=mRNA_H-paniculata_contig43342.11052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=318bp|location=Sequence derived from alignment at H-paniculata_contig43342:1341..1658+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAATTAACAATGGCAATACGTGGGTGGCTGATCCAGGTGCAAGTAATCA CATGACGAACAATCTTGCAAAAATGTATGATATTCGCAAGCCGGTAACAG GGGAAGATGTGGTAATGTTGGGGAATGGATCCATTATCGTGGTGGAGTTT CTGGGAAAGTTGAATTTGATATTTCATTCCCCTACTGATGTGCCTACCAC AATTCAAGTATCATACTTACCGGAGTTGAACTTCAATCTTTTTTCACTCC ACAAAATCCAAGGGAACTGCTCAGTACTTTTAGATGCAGCAGGCACCCAC ATCGGTGACAACCTCTCT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig43342:1341..1658+

>mRNA_H-paniculata_contig43342.11052.1 ID=mRNA_H-paniculata_contig43342.11052.1|Name=mRNA_H-paniculata_contig43342.11052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig43342:1341..1658+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAATTAACAATGGCAATACGTGGGTGGCTGATCCAGGTGCAAGTAATCA
CATGACGAACAATCTTGCAAAAATGTATGATATTCGCAAGCCGGTAACAG
GGGAAGATGTGGTAATGTTGGGGAATGGATCCATTATCGTGGTGGAGTTT
CTGGGAAAGTTGAATTTGATATTTCATTCCCCTACTGATGTGCCTACCAC
AATTCAAGTATCATACTTACCGGAGTTGAACTTCAATCTTTTTTCACTCC
ACAAAATCCAAGGGAACTGCTCAGTACTTTTAGATGCAGCAGGCACCCAC
ATCGGTGACAACCTCTCTGCAATTAACAATGGCAATACGTGGGTGGCTGA
TCCAGGTGCAAGTAATCACATGACGAACAATCTTGCAAAAATGTATGATA
TTCGCAAGCCGGTAACAGGGGAAGATGTGGTAATGTTGGGGAATGGATCC
ATTATCGTGGTGGAGTTTCTGGGAAAGTTGAATTTGATATTTCATTCCCC
TACTGATGTGCCTACCACAATTCAAGTATCATACTTACCGGAGTTGAACT
TCAATCTTTTTTCACTCCACAAAATCCAAGGGAACTGCTCAGTACTTTTA
GATGCAGCAGGCACCCACATCGGTGACAACCTCTCT
back to top