mRNA_H-paniculata_contig43321.11049.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig43321.11049.1 vs. uniprot
Match: A0A0J7K690_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K690_LASNI) HSP 1 Score: 103 bits (257), Expect = 1.780e-22 Identity = 57/157 (36.31%), Postives = 89/157 (56.69%), Query Frame = 1
Query: 46 EPKNHREAQVSLEWEHWKRAKEVEIEGLIDNRVWTQMERPKNKLIVSTMMIYKRKICEDGKVERYKCRLVAHGNRQIKGIHFQEASSPAPAAASTKIRLSHAAIQDWELRHVEFEQAYLQAPIDQEICVEIPVKYRKFSGAVGRLDEAIYGLVQAGR 516
EP+ + EA S E E W+RA E E LI N WT+ + P + ++ +I+K+K DGKV RYK RLV G Q GI + E +P S + S AA +D+E+ + + A+L +D+EI +++P + +G V +L +++YGL Q+ R
Sbjct: 564 EPQTYEEAMASNEVEQWRRAIEEEESALIKNNTWTKTKLPTGRKAITAKIIFKKKRDADGKVHRYKARLVVRGFSQRPGIDYNETYAPVIRYESIRFLFSLAAKEDFEIAQFDIKTAFLNGELDEEIFMQLPTRVTD-AGNVVKLQKSLYGLKQSPR 719
BLAST of mRNA_H-paniculata_contig43321.11049.1 vs. uniprot
Match: A0A151R0M8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R0M8_CAJCA) HSP 1 Score: 102 bits (254), Expect = 2.860e-22 Identity = 58/158 (36.71%), Postives = 86/158 (54.43%), Query Frame = 1
Query: 46 EPKNHREAQVSLEWEHWKRAKEVEIEGLIDNRVWTQMERPKNKLIVSTMMIYKRKICEDGKVERYKCRLVAHGNRQIKGIHFQEASSPAPAAASTKIRLSHAAIQDWELRHVEFEQAYLQAPIDQEICVEIPV-KYRKFSGAVGRLDEAIYGLVQAGR 516
EPK++ EA LEW +A EI+ L N W +E P NK + +YK K DG +ERYK RLVA G QI+G + + SP + ++ L+ AA Q W LR ++ A+L + +EI + +P Y+ G + +L +++YGL QA R
Sbjct: 335 EPKSYHEASKHLEW---IQAMNAEIQALESNHTWVLIELPPNKNAIGCRWVYKIKHRADGSIERYKARLVAKGYTQIEGQDYLDTFSPVAKLTTIRLLLAFAATQQWNLRQLDVNNAFLHGDLHEEIYMILPPGMYQDKQGMLCKLQKSLYGLKQASR 489
BLAST of mRNA_H-paniculata_contig43321.11049.1 vs. uniprot
Match: A0A151T1T1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T1T1_CAJCA) HSP 1 Score: 98.2 bits (243), Expect = 1.380e-20 Identity = 56/158 (35.44%), Postives = 84/158 (53.16%), Query Frame = 1
Query: 46 EPKNHREAQVSLEWEHWKRAKEVEIEGLIDNRVWTQMERPKNKLIVSTMMIYKRKICEDGKVERYKCRLVAHGNRQIKGIHFQEASSPAPAAASTKIRLSHAAIQDWELRHVEFEQAYLQAPIDQEICVEIPVKYR-KFSGAVGRLDEAIYGLVQAGR 516
EPKN EA S + W +A EI L N W P +K + +YK K DG ++RYK RLVA G Q++G+ F + SP + ++ LS AAI +W L+ ++ A+L +++E+ +++P F G V RL ++YGL QA R
Sbjct: 802 EPKNFAEASKS---DSWLKAMHEEIFALEANNTWVLTTLPPHKTAIGCRWVYKVKHKADGSIDRYKARLVAKGYTQMEGLDFFDTFSPVAKLTTVRLLLSLAAINNWHLKQLDVNNAFLHGDLNEEVYMQLPPGLTPSFPGQVCRLQRSLYGLKQASR 956
BLAST of mRNA_H-paniculata_contig43321.11049.1 vs. uniprot
Match: A0A085LPI1_9BILA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085LPI1_9BILA) HSP 1 Score: 94.0 bits (232), Expect = 1.520e-20 Identity = 50/158 (31.65%), Postives = 87/158 (55.06%), Query Frame = 1
Query: 43 VEPKNHREAQVSLEWEHWKRAKEVEIEGLIDNRVWTQMERPKNKLIVSTMMIYKRKICEDGKVERYKCRLVAHGNRQIKGIHFQEASSPAPAAASTKIRLSHAAIQDWELRHVEFEQAYLQAPIDQEICVEIPVKYRKFSGAVGRLDEAIYGLVQAGR 516
V+ ++ EA S E + W++A + E + L+ + WT+++ PK ++ + +GKV+RYK RLVA G Q G+ + E +P + ++ ++ A +W +RHV+ + AYL + +EI +++ Y GAV +L IYGL Q+GR
Sbjct: 75 VDARSVNEALSSNEAKEWRKAMDEEYKSLLARQTWTEVQMPKQATLIGS---------NEGKVQRYKARLVAQGFAQKSGVDYHETYAPVVSLTVIRLLMALAVCFNWHIRHVDVKCAYLYGKLTEEIFMKLSEGYEHPPGAVAKLLRPIYGLKQSGR 223
BLAST of mRNA_H-paniculata_contig43321.11049.1 vs. uniprot
Match: A0A182HAC3_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HAC3_AEDAL) HSP 1 Score: 95.9 bits (237), Expect = 8.380e-20 Identity = 53/159 (33.33%), Postives = 91/159 (57.23%), Query Frame = 1
Query: 46 EPKNHREAQVSLEWEHWKRAKEVEIEGLIDNRVWTQMERPKNKLIVSTMMIYKRKICEDGKVERYKCRLVAHGNRQIKGIHFQEASSPAPAAASTKIRLSHAAIQDWELRHVEFEQAYLQAPIDQEICVEIPVKYR--KFSGAVGRLDEAIYGLVQAGR 516
EP + EA S E E W +A E + LIDN W ++ P ++ I+ + ++KRK+ DGKV+R+K RLVA G Q G+ F ++ +P ++ ++ L+ A + +++H++ + AYL +++E+ + P + V RL ++IYGL QA R
Sbjct: 349 EPTTYEEAVGSEEKEKWIKAMSEEYQSLIDNDTWELVDPPTDRNIIGSRWVFKRKLNADGKVDRFKARLVAQGFAQRVGVDFDDSFAPVAMHSTFRLLLTVAGYRKMQVKHLDVKSAYLYGTLEEEVFMRQPPGFAVPHKEQQVCRLRKSIYGLKQAAR 507
BLAST of mRNA_H-paniculata_contig43321.11049.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA) HSP 1 Score: 95.5 bits (236), Expect = 1.200e-19 Identity = 50/148 (33.78%), Postives = 88/148 (59.46%), Query Frame = 1
Query: 76 SLEWEHWKRAKEVEIEGLIDNRVWTQMERPKNKLIVSTMMIYKRKICEDGKVERYKCRLVAHGNRQIKGIHFQEASSPAPAAASTKIRLSHAAIQDWELRHVEFEQAYLQAPIDQEICVEIPVKYR-KFSGAVGRLDEAIYGLVQAGR 516
+L+ E W+ A E+ L +N+ W ++ PK K +V I+ K+ DGK++RYK RLVA G Q GI ++E +P S +I +S AA DW+L ++ + A+L +++E+ +++P + + + V RL++++YGL Q+ R
Sbjct: 858 ALKDEKWRAAVLEEMAALEENKTWDIVKLPKEKKVVGCRWIFTTKMGADGKIDRYKARLVAQGYTQTHGIDYEETFAPVAKLNSIRILISLAANLDWKLHQLDVKNAFLNGKLEEEVYMKLPPGFEGENNDVVCRLNKSLYGLKQSPR 1005
BLAST of mRNA_H-paniculata_contig43321.11049.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU) HSP 1 Score: 95.1 bits (235), Expect = 1.560e-19 Identity = 56/156 (35.90%), Postives = 83/156 (53.21%), Query Frame = 1
Query: 46 EPKNHREAQVSLEWEHWKRAKEVEIEGLIDNRVWTQMERPKNKLIVSTMMIYKRKICEDGKVERYKCRLVAHGNRQIKGIHFQEASSPAPAAASTKIRLSHAAIQDWELRHVEFEQAYLQAPIDQEICVEIPVKYRKFSGAVGRLDEAIYGLVQAG 513
EP+ EAQ + EW WKRA + EI L + + P + + +Y+ K DG++ RYK RLVA G Q G+ + E +P S ++ L+ AA ++ EL + AYL A +D+EI + P Y + S + RL +A+YGL QAG
Sbjct: 14 EPRTLSEAQAAPEWPEWKRAMDDEIAQLRKLGTYAPADLPAGRKPIGCRWVYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGSSPIVRLRKALYGLKQAG 169
BLAST of mRNA_H-paniculata_contig43321.11049.1 vs. uniprot
Match: A0A2K3NZR4_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3NZR4_TRIPR) HSP 1 Score: 95.1 bits (235), Expect = 1.620e-19 Identity = 49/160 (30.63%), Postives = 92/160 (57.50%), Query Frame = 1
Query: 43 VEPKNHREAQVSLEWEHWKRAKEVEIEGLIDNRVWTQMERPKNKLIVSTMMIYKRKICEDGKVERYKCRLVAHGNRQIKGIHFQEASSPAPAAASTKIRLSHAAIQDWELRHVEFEQAYLQAPIDQEICVEIPVKYRKFS--GAVGRLDEAIYGLVQAGR 516
VEPK + +A ++E W+ A E+ L +N+ W+ ++ P +K++V +YK K +G +ERYK RLVA G Q++G+ + + SP + ++ L+ A+I+ W L ++ A+L +++++ + +P + + V +L ++IYGL QA R
Sbjct: 693 VEPKTYTQAS---KFECWRNAMNAELLALDENKTWSVVDLPHDKVLVGCKWVYKVKYHANGSIERYKARLVAKGYTQLEGVDYFDTFSPVAKITTVRVLLALASIKGWHLEQLDVNNAFLHGDLNEDVYMSLPPGFPATNEPNKVCKLHKSIYGLKQASR 849
BLAST of mRNA_H-paniculata_contig43321.11049.1 vs. uniprot
Match: A0A0C2WM40_AMAMK (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WM40_AMAMK) HSP 1 Score: 94.7 bits (234), Expect = 1.900e-19 Identity = 56/157 (35.67%), Postives = 85/157 (54.14%), Query Frame = 1
Query: 49 PKNHREAQVSLEWEHWKRAKEVEIEGLIDNRVWTQMERPKNKLIVSTMMIYKRKICEDGKVERYKCRLVAHGNRQIKGIHFQEASSPAPAAASTKIR--LSHAAIQDWELRHVEFEQAYLQAPIDQEICVEIPVKYRKFSGAVGRLDEAIYGLVQAG 513
P N EA+ E E W+ A E+E + W ++ P+ K IV ++ +K E+G++ R+K RLVA G Q G+ + + AP +R L+ AA+ +WELR + + AYL +D+EI + P + SG V RL ++IYGL QAG
Sbjct: 45 PNNVEEARGCDEAEKWEGAMGEELEMMKKMGTWELVDLPEGKNIVGCKWVFTKKRDEEGRINRFKARLVAQGFSQKPGVDYSNTGTFAPVMRFESLRTHLALAAVNNWELRQFDVKSAYLNGSLDEEIYMRQPPGFDDGSGRVCRLKKSIYGLKQAG 201
BLAST of mRNA_H-paniculata_contig43321.11049.1 vs. uniprot
Match: A0A4S4N6A1_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4N6A1_9APHY) HSP 1 Score: 94.4 bits (233), Expect = 2.840e-19 Identity = 51/163 (31.29%), Postives = 95/163 (58.28%), Query Frame = 1
Query: 28 RSDLPVEPKNHREAQVSLEWEHWKRAKEVEIEGLIDNRVWTQMERPKNKLIVSTMMIYKRKICEDGKVERYKCRLVAHGNRQIKGIHFQEASSPAPAAASTKIRLSHAAIQDWELRHVEFEQAYLQAPIDQEICVEIPVKYRKFSGAVGRLDEAIYGLVQAGR 516
RS+ EP + EA + WK A E+E + +++T ++RP+N+ ++ + ++K K+ DG++E+YK RLVA G Q++G+ + + +P +S + L+ A D E+ ++ + A+L +++EI +E+P ++ S V L ++IYGL QA R
Sbjct: 271 RSNRLCEPLTYDEAMSGPDTTMWKIACIAELEAFVKAKLYTAVDRPRNRKVIDSKWVFKYKLGPDGQIEKYKARLVAKGFTQVEGLDYNDTFAPVSKFSSIRTLLALADKLDLEVHQMDVKSAFLNGDLEEEIFMEMPPGFKDDS-QVWSLHKSIYGLKQASR 432 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43321.11049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig43321.11049.1 >prot_H-paniculata_contig43321.11049.1 ID=prot_H-paniculata_contig43321.11049.1|Name=mRNA_H-paniculata_contig43321.11049.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=170bp MPEELRSDLPVEPKNHREAQVSLEWEHWKRAKEVEIEGLIDNRVWTQMERback to top mRNA from alignment at H-paniculata_contig43321:76..597- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig43321.11049.1 ID=mRNA_H-paniculata_contig43321.11049.1|Name=mRNA_H-paniculata_contig43321.11049.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=522bp|location=Sequence derived from alignment at H-paniculata_contig43321:76..597- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig43321:76..597- >mRNA_H-paniculata_contig43321.11049.1 ID=mRNA_H-paniculata_contig43321.11049.1|Name=mRNA_H-paniculata_contig43321.11049.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at H-paniculata_contig43321:76..597- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |