mRNA_H-paniculata_contig4332.11047.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4332.11047.1
Unique NamemRNA_H-paniculata_contig4332.11047.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4332.11047.1 vs. uniprot
Match: D8LJS6_ECTSI (Cystathionine gamma-lyase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJS6_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 3.860e-21
Identity = 44/53 (83.02%), Postives = 51/53 (96.23%), Query Frame = 2 
Query:  248 MTGKAGTWPEGKEMAMKTKLVHQGINPDKDTGAILTPIVQSTTFVQESVETYL 406
            M+G+ GTWPEGKEMA++TKLVHQGINPDK+TGAILTPIVQSTTF+Q+SVE YL
Sbjct:    1 MSGECGTWPEGKEMALETKLVHQGINPDKETGAILTPIVQSTTFIQDSVEKYL 53
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BLAST of mRNA_H-paniculata_contig4332.11047.1 vs. uniprot
Match: A0A836CFW8_9STRA (Cystathionine gamma-lyase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFW8_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.410e-13
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 2 
Query:  248 MTGK-AGTWPEGKEMAMKTKLVHQGINPDKDTGAILTPIVQSTTFVQESVETYL 406
            M+GK AG+WPEG EM   T+LVH GI+PD+ TGAILTPI Q+TT+VQESV+ YL
Sbjct:    1 MSGKGAGSWPEGVEMGYATQLVHAGIDPDEKTGAILTPIYQATTYVQESVDKYL 54
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BLAST of mRNA_H-paniculata_contig4332.11047.1 vs. uniprot
Match: A0A0L0FZV2_9EUKA (Cystathionine gamma-synthase n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FZV2_9EUKA)

HSP 1 Score: 70.9 bits (172), Expect = 1.050e-11
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 2 
Query:  251 TGKAGTWPEGKEMAMKTKLVHQGINPDKDTGAILTPIVQSTTFVQESVETYL 406
            TG +GTW EG +    T+LVH G+NPD  TGAILTPIVQ+TTFVQES++ YL
Sbjct:    4 TGGSGTWVEG-DCGQSTQLVHAGVNPDPTTGAILTPIVQATTFVQESIDLYL 54
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BLAST of mRNA_H-paniculata_contig4332.11047.1 vs. uniprot
Match: A0A7S3S7F8_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3S7F8_EMIHU)

HSP 1 Score: 65.9 bits (159), Expect = 1.670e-10
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 2 
Query:  233 GLHRIMTGKAGTWPEGKE-MAMKTKLVHQGINPDKDTGAILTPIVQSTTFVQESVETYL 406
            G +R +  K+G W   K+ +  +TKLVH G++PD  TGAILTP+ QSTT+VQESV+ YL
Sbjct:   27 GTYRTLALKSGQWVRNKDDLHTETKLVHAGVDPDPITGAILTPVYQSTTYVQESVDEYL 85
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BLAST of mRNA_H-paniculata_contig4332.11047.1 vs. uniprot
Match: A0A813F511_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813F511_POLGL)

HSP 1 Score: 66.2 bits (160), Expect = 4.560e-10
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 2 
Query:  203 FCTPLDSLS*GL--HRIMTGKAGTWPEGKEMAMKTKLVHQGINPDKDTGAILTPIVQSTTFVQESVETYL 406
            FC  L + +      R +T K+G+W EGK +A  T  VH G++PD+ TGA+LTP+  STTFVQESVE YL
Sbjct:    4 FCKQLPATARAFAHSRPITTKSGSWMEGK-LADDTNYVHSGVSPDERTGALLTPLFLSTTFVQESVEKYL 72
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BLAST of mRNA_H-paniculata_contig4332.11047.1 vs. uniprot
Match: A0A8J2FDR0_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2FDR0_9DINO)

HSP 1 Score: 66.2 bits (160), Expect = 4.690e-10
Identity = 43/94 (45.74%), Postives = 50/94 (53.19%), Query Frame = 2 
Query:  131 SSDLGSERF*GVCCDNLPHLSETNFCTPLDSLS*GLHRIM--TGKAGTWPEGKEMAMKTKLVHQGINPDKDTGAILTPIVQSTTFVQESVETYL 406
            SS   S       C  L HL  T+  TP D     LH +   T KAG W  G      T LVH  I P++ +GAI+TP+ QSTTFVQESVE YL
Sbjct:   21 SSCRNSNAAAAASCSRLHHLRRTS--TPSDVSIRPLHTLSRPTRKAGDWMPGSRH-QDTDLVHAAITPEEKSGAIITPVYQSTTFVQESVEKYL 111
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BLAST of mRNA_H-paniculata_contig4332.11047.1 vs. uniprot
Match: R1DRA9_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DRA9_EMIHU)

HSP 1 Score: 65.9 bits (159), Expect = 5.530e-10
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 2 
Query:  233 GLHRIMTGKAGTWPEGKE-MAMKTKLVHQGINPDKDTGAILTPIVQSTTFVQESVETYL 406
            G +R +  K+G W   K+ +  +TKLVH G++PD  TGAILTP+ QSTT+VQESV+ YL
Sbjct:   17 GTYRTLALKSGQWVRNKDDLHTETKLVHAGVDPDPITGAILTPVYQSTTYVQESVDEYL 75
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BLAST of mRNA_H-paniculata_contig4332.11047.1 vs. uniprot
Match: A0A7S3K336_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K336_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 6.050e-10
Identity = 31/49 (63.27%), Postives = 40/49 (81.63%), Query Frame = 2 
Query:  260 AGTWPEGKEMAMKTKLVHQGINPDKDTGAILTPIVQSTTFVQESVETYL 406
            +GTW  G ++ M TKLVH G++PD  TGAILTPIVQ+TTFVQES++ Y+
Sbjct:    2 SGTWIPG-DLGMDTKLVHAGVSPDPATGAILTPIVQATTFVQESIDQYM 49
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BLAST of mRNA_H-paniculata_contig4332.11047.1 vs. uniprot
Match: A0A7S3WA90_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WA90_EMIHU)

HSP 1 Score: 65.9 bits (159), Expect = 6.370e-10
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 2 
Query:  233 GLHRIMTGKAGTWPEGKE-MAMKTKLVHQGINPDKDTGAILTPIVQSTTFVQESVETYL 406
            G +R +  K+G W   K+ +  +TKLVH G++PD  TGAILTP+ QSTT+VQESV+ YL
Sbjct:   27 GTYRTLALKSGQWVRNKDDLHTETKLVHAGVDPDPITGAILTPVYQSTTYVQESVDEYL 85
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BLAST of mRNA_H-paniculata_contig4332.11047.1 vs. uniprot
Match: A0A7S3C117_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3C117_9EUKA)

HSP 1 Score: 65.5 bits (158), Expect = 8.550e-10
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 2 
Query:  236 LHRIMTGKAGTWPEGKEMAMKTKLVHQGINPDKDTGAILTPIVQSTTFVQESVETYL 406
            L R M  K+G W + +E+   TKLVH G+NPD  +GAILTPI QSTT++Q+S+E YL
Sbjct:   25 LSRSMALKSGEWID-RELGRDTKLVHAGVNPDPISGAILTPIFQSTTYIQDSIEEYL 80
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4332.11047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJS6_ECTSI3.860e-2183.02Cystathionine gamma-lyase n=2 Tax=Ectocarpus TaxID... [more]
A0A836CFW8_9STRA2.410e-1368.52Cystathionine gamma-lyase n=1 Tax=Tribonema minus ... [more]
A0A0L0FZV2_9EUKA1.050e-1165.38Cystathionine gamma-synthase n=1 Tax=Sphaeroforma ... [more]
A0A7S3S7F8_EMIHU1.670e-1054.24Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A813F511_POLGL4.560e-1051.43Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A8J2FDR0_9DINO4.690e-1045.74Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
R1DRA9_EMIHU5.530e-1054.24Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S3K336_9STRA6.050e-1063.27Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3WA90_EMIHU6.370e-1054.24Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S3C117_9EUKA8.550e-1056.14Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4332contigH-paniculata_contig4332:754..3695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue2.1e-18
Seed eggNOG ortholog2880.D8LJS6
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.cystathionine gamma-synthase activity
EggNOG OGsCOG0626@1,KOG0053@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size407
Cds size159
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4332.11047.1prot_H-paniculata_contig4332.11047.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4332 754..3448 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930315.7650332-CDS-H-paniculata_contig4332:753..8591622930315.7650332-CDS-H-paniculata_contig4332:753..859Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4332 754..859 -
1691481238.3590765-CDS-H-paniculata_contig4332:753..8591691481238.3590765-CDS-H-paniculata_contig4332:753..859Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4332 754..859 -
1622930315.7807114-CDS-H-paniculata_contig4332:3395..34481622930315.7807114-CDS-H-paniculata_contig4332:3395..3448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4332 3396..3448 -
1691481238.3692925-CDS-H-paniculata_contig4332:3395..34481691481238.3692925-CDS-H-paniculata_contig4332:3395..3448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4332 3396..3448 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930315.8025105-UTR-H-paniculata_contig4332:3448..36951622930315.8025105-UTR-H-paniculata_contig4332:3448..3695Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4332 3449..3695 -
1691481238.3778296-UTR-H-paniculata_contig4332:3448..36951691481238.3778296-UTR-H-paniculata_contig4332:3448..3695Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4332 3449..3695 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4332.11047.1

>prot_H-paniculata_contig4332.11047.1 ID=prot_H-paniculata_contig4332.11047.1|Name=mRNA_H-paniculata_contig4332.11047.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
MTGKAGTWPEGKEMAMKTKLVHQGINPDKDTGAILTPIVQSTTFVQESVE
TYL
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mRNA from alignment at H-paniculata_contig4332:754..3695-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4332.11047.1 ID=mRNA_H-paniculata_contig4332.11047.1|Name=mRNA_H-paniculata_contig4332.11047.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2942bp|location=Sequence derived from alignment at H-paniculata_contig4332:754..3695- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATACATTCACGTGAAGGCTAGTTTATGTCCATGTGCAGTACACACGCCAG
TGATACAGTGATGCTCTCTTGTGAAGATTGTAGCAAGGGACCCCGCCCCT
ATCCCGAATTCACATTATTTTAGTTTGTTGTCCTCTGACCTCGGGTCCGA
GAGGTTTTAGGGTGTCTGTTGTGACAACCTACCGCATCTATCAGAGACAA
ACTTTTGTACACCGTTGGACTCCCTGAGCTAAGGACTGCATCGAATCATG
ACGGGGAAAGCAGGAACATGGCCTGAGGGGAAAGAGATGGCCATGAAGAC
GTAAGTCTGTACCAGACCACTGTTTCGCAAGCTCCTCTTACAGACAGATA
GTCAAGCCCTGCAAACCGCGAACTGGTATTCAACATCAACATCTAGTTGA
CATGATGATTTTCATTCACTCTATGTGTGCGCGTCAGCCATTTGAGCTGT
ATGATAAGTACAGTCAACAATGTCAATGTGCCTTACCTTTGTCTCCTGAG
GATGCAGGGAACTATCCGGTGAAAATTGCTGTAGATTTCAGACCAAAGGC
GTTCAATACTTGTATTATTTGCGTCAGATCGGTGTCTCCATGCCCTTCGT
CTGCGGGTGGTTGATATCCGTTCGGCCGGCCCTCCTCTAGACAACACAGT
TTAGTAGAGCCAGTAATCGCGTTATTGCACCCGTAAGAGAAGTTTTCAAA
GGTTCCTACCGTTCCGCTCTCGCCTCGTTCATGTTGATTTCTCAGGCAGT
ATGCAGTCAGTCAACACATGTGCTACAGCCCGAACCGTACAAACGCTGTC
TGACTGATGTCCCGTAAAAGCAATAATGTAGTAGAACCACGGTTACACCT
GTGTATTCCTTGCTTTTGTCCTAGGCCCATGCACAAAGAGTTGCTCCACT
CGCAGTTACTCACGCTGCGCTCCCACGGCGCTTCGTTTTTCACAAATCAC
TTGAATACAGACTGGAGAATATGACGAAGAGGCGACCTTGCCTTACTCGT
TTAGGCCAAGTACGAGGTAATACGAATGTAAATCATGTGCAAGATTTTTA
GCTTTTGAAATATGGACCTGTTTCTCCGTCGCCACTTGTCTCTTCCGGAG
TGTTTCGCCGATTTGTTTTTGTTTGTGCTTCACGTTTTGCCGATTTCTAC
GTCCACTGTCTGCCGGTCTACTGTCTTTAGTGTATATACTAATTGTATGA
GGGCCCCAATCCATGTTTCTACCCTTGTTAGGCCGAGCCTTATCGAAAGA
CAAAAACGATGCTTGGCAAATTATGCAACAATCTTTACTAGCTGGAGAGT
CTGCGATTAGGCCGAAGACTGGTCCAAACGCTGGTTACTGCTGATGGCGC
TTTTTCCATGCTAAAGGACGATTTCACAGGAATCTACGAGAAAAGTGAAA
AAGAATTTTCGGGTCCTAATCTGGTCGTTGGTGGGTACGTAATCTGTTCT
GTAGAGGAACAAAATAGCGACTTGAAGGCGGCGGAAGCGTTCACGGTTGC
CCTCGAGCTGTCCAAGGTAGCCAAAGGTGGTGCATTGCGACGTGTGACAA
AGGAACGCAGCACAGTGATTGTAACCGTCACTCTCCTGGGTAAAGAAAAA
CGCAGTTCGGGCCGTAGCTCTTCATCCACCGAGCCCCGTATCCTTGCTTT
GGGTAGAATCAAGAAAAATAAATAAAACAAGAACGGGTGTTCTTTGTGGG
CAAATGGCCAAGACAGGCACTGTCCAAGCGGCACTTTTTGGTAATTGCAA
TTGCACATGAACTACTGTACTTTCCCAAATGCAGGTTGAATTTCCTTCGA
ACCGAGCCTAGTCCATGCAGCTGAGTAAGGCCTATCGTGCGCACTAGCGC
GCGTGTACTCTGTCCTTCCGTGCGTGGTGTCTGCGTATTTGCTTCGAGAC
TCTCTGTAGTCTCGTGGGTATTTTTCTGTCCTTATTTTTCCTAACGTAGT
GTAAACCAGGACATCCCCAGGACCAAGCGTCATCTTTCGATCGGACACAA
GAATCGATTCCTGTCCGATTTATCTAGTCAGAATCGATGTGGCGAGAATA
GATACTTCACTCTGGATAGGTCTCGGTCTTCACCTCATCAGGGTAGTAAG
GGTGGGCACGCGGGCGTTTTGGGTGGGGGGGATCAGCATCTCTGACGCTC
ATACAAAATTTCCGTTGTATCCATCATGAGATCCTCAACTTGAATTATGT
ACAAAATTATATCAATGGTGGATCAGTACTGTACTGGGTTTTTTTTTCGT
TCTCTAACCTCGCGGGACGGACGGGAAACGGAGTAGGAGTGAGCAAAGGA
AGAAAATAATGTGTCTTTTTTTGTAGCGGAGAACGACATGTCCCATTTTG
ATAGAAATCAGCTGTTTTACTAAAAAAGAGAAGTCTGGAATTCGAGAAAC
TTCAACTCTGTCAGGATTTTTTTTTTTTTGCACGTTTACCGACGTTCTGG
TCCGGCGAGACGAGGTTATCGATACCACATGATGCCCCGAGAGCTATTCA
TGACCTTACTGCGAGGAGTATAGCCCAATTTTCCCGTTTCTCCAGGTGCG
TGGTCTTCAAATAACATTTTGCCAAGACATCGAACGAGGAAAAAAGATGG
ATCCAGGCTACATCGGACACTTGCGTGATTTTTCACGCAACTTCTTTTCC
AGATGTTGAGCACAAGTTTTCGTTATCACCATGGTTTTAAACGCAGTGTA
CAGTTGTACATGCTTGTAGGAAATACCTGGTTTTCCCGTACGGACGCTCA
TAACATGCAATCTCATTCTGAAGAAAAAAGTGGCCCTGGATCTCAAATTC
CTTCCTTTTATATATTGTCCCATGTGCTGCATTCAGCAAACTGGTACACC
AGGGCATCAACCCTGATAAGGACACAGGCGCCATCCTGACGCCTATCGTG
CAGTCTACGACATTCGTCCAAGAGTCGGTCGAAACCTACCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig4332:754..3695-

>mRNA_H-paniculata_contig4332.11047.1 ID=mRNA_H-paniculata_contig4332.11047.1|Name=mRNA_H-paniculata_contig4332.11047.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig4332:754..3695- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGGGGAAAGCAGGAACATGGCCTGAGGGGAAAGAGATGGCCATGAA
GACATGACGGGGAAAGCAGGAACATGGCCTGAGGGGAAAGAGATGGCCAT
GAAGACCAAACTGGTACACCAGGGCATCAACCCTGATAAGGACACAGGCG
CCATCCTGACGCCTATCGTGCAGTCTACGACATTCGTCCAAGAGTCGGTC
GAAACCTACCTCCAAACTGGTACACCAGGGCATCAACCCTGATAAGGACA
CAGGCGCCATCCTGACGCCTATCGTGCAGTCTACGACATTCGTCCAAGAG
TCGGTCGAAACCTACCTC
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