mRNA_H-paniculata_contig43316.11046.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43316.11046.1
Unique NamemRNA_H-paniculata_contig43316.11046.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig43316.11046.1 vs. uniprot
Match: A0A6H5JP10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP10_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.500e-31
Identity = 61/82 (74.39%), Postives = 71/82 (86.59%), Query Frame = 1
Query:   22 SQVREVALCDFLTRRFLEASQKAGADQRTQSGGWSGAKGGEITIDEPGQHILERTSVVVHAGDGGTVEARFTVAMPARGEPV 267
            ++VR+VALCDFLTRRFLEA+++ GADQ+   GGW GAKGGEITIDEPGQHILER+SVVVH  DG +VEARFTV MPARG  +
Sbjct:  221 TKVRKVALCDFLTRRFLEAARQDGADQKAGGGGWGGAKGGEITIDEPGQHILERSSVVVHESDG-SVEARFTVGMPARGRSI 301          
BLAST of mRNA_H-paniculata_contig43316.11046.1 vs. uniprot
Match: A0A7S0N8L3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N8L3_9CHLO)

HSP 1 Score: 105 bits (261), Expect = 1.850e-27
Identity = 53/78 (67.95%), Postives = 62/78 (79.49%), Query Frame = 1
Query:   22 SQVREVALCDFLTRRFLEASQKAGADQRTQSGGWSGAKGGEITIDEPGQHILERTSVVVHAGDGGTVEARFTVAMPAR 255
            S+VR  ALCD+LTR F    + AGADQRT+ GGWSGAKGGE+TID PGQH+LERTSV+V   D   VEARFTVA+PA+
Sbjct:   34 SRVRTTALCDYLTRVFAFHVKGAGADQRTEGGGWSGAKGGEMTIDAPGQHVLERTSVLV---DASQVEARFTVALPAQ 108          
BLAST of mRNA_H-paniculata_contig43316.11046.1 vs. uniprot
Match: A0A835YTL6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTL6_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.150e-26
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = 1
Query:   22 SQVREVALCDFLTRRFLEASQKAGADQRTQSGGWSGAKGGEITIDEPGQHILERTSVVVHAGDGGTVEARFTVAMPARGEPV 267
            S+VR +ALCDFLTR F  A+  AGADQR +SGGWSG KGGEIT+D+PGQH+LERTSV +   DGG V+ARFTVA+PARG  +
Sbjct:  145 SRVRAIALCDFLTRAFWRAAHAAGADQRRESGGWSGTKGGEITMDKPGQHVLERTSVQL-LPDGG-VQARFTVALPARGRTI 224          
BLAST of mRNA_H-paniculata_contig43316.11046.1 vs. uniprot
Match: A0A8J9RCK7_9CHLO (Uncharacterized protein MJ1628 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RCK7_9CHLO)

HSP 1 Score: 108 bits (271), Expect = 9.570e-26
Identity = 53/90 (58.89%), Postives = 67/90 (74.44%), Query Frame = 1
Query:    1 YTRNKIPSQVREVALCDFLTRRFLEASQKAGADQRTQSGGWSGAKGGEITIDEPGQHILERTSVVVHAGDGGTVEARFTVAMPARGEPVV 270
            + R+   SQ+R  ALCD+LTR F EA   AGAD RT+SGGW G KGGE+T+D PGQH+L+RTS ++   D G VEARFTVA+PARG  ++
Sbjct:  114 FPRDLWQSQIRRTALCDYLTRSFGEAVSAAGADVRTESGGWHGQKGGEMTVDTPGQHVLQRTSCMIT--DEGGVEARFTVALPARGRTIL 201          
BLAST of mRNA_H-paniculata_contig43316.11046.1 vs. uniprot
Match: K8ZC40_NANGC (Abc transporter atpase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZC40_NANGC)

HSP 1 Score: 103 bits (258), Expect = 9.660e-25
Identity = 47/79 (59.49%), Postives = 61/79 (77.22%), Query Frame = 1
Query:   31 REVALCDFLTRRFLEASQKAGADQRTQSGGWSGAKGGEITIDEPGQHILERTSVVVHAGDGGTVEARFTVAMPARGEPV 267
            R VAL D+L+R F+ A++ AG DQR +SGGW G KGGEIT++ PGQH+L RT+V++    GG VEARFTVA+PARG  +
Sbjct:   22 RAVALADYLSRMFVRAAKAAGDDQRVESGGWQGKKGGEITMEAPGQHVLARTNVIIDVRGGGGVEARFTVALPARGRSI 100          
BLAST of mRNA_H-paniculata_contig43316.11046.1 vs. uniprot
Match: K8YTI6_NANGC (Abc transporter atpase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YTI6_NANGC)

HSP 1 Score: 103 bits (258), Expect = 1.130e-24
Identity = 47/79 (59.49%), Postives = 61/79 (77.22%), Query Frame = 1
Query:   31 REVALCDFLTRRFLEASQKAGADQRTQSGGWSGAKGGEITIDEPGQHILERTSVVVHAGDGGTVEARFTVAMPARGEPV 267
            R VAL D+L+R F+ A++ AG DQR +SGGW G KGGEIT++ PGQH+L RT+V++    GG VEARFTVA+PARG  +
Sbjct:   96 RAVALADYLSRMFVRAAKAAGDDQRVESGGWQGKKGGEITMEAPGQHVLARTNVIIDVRGGGGVEARFTVALPARGRSI 174          
BLAST of mRNA_H-paniculata_contig43316.11046.1 vs. uniprot
Match: A0A4D9CW80_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CW80_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.670e-24
Identity = 47/79 (59.49%), Postives = 61/79 (77.22%), Query Frame = 1
Query:   31 REVALCDFLTRRFLEASQKAGADQRTQSGGWSGAKGGEITIDEPGQHILERTSVVVHAGDGGTVEARFTVAMPARGEPV 267
            R V L D+L+R F+ A++ AG DQR +SGGW G KGGEIT++ PGQH+L RT+V++  G GG VEARFTVA+PARG  +
Sbjct:  132 RAVVLADYLSRMFVRAAKAAGDDQRVESGGWQGKKGGEITMEAPGQHVLARTNVIIDVGGGGGVEARFTVALPARGRSI 210          
BLAST of mRNA_H-paniculata_contig43316.11046.1 vs. uniprot
Match: A0A8K1F9B2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1F9B2_PYTOL)

HSP 1 Score: 105 bits (261), Expect = 2.190e-24
Identity = 47/89 (52.81%), Postives = 69/89 (77.53%), Query Frame = 1
Query:    1 YTRNKIPSQVREVALCDFLTRRFLEASQKAGADQRTQSGGWSGAKGGEITIDEPGQHILERTSVVVHAGDGGTVEARFTVAMPARGEPV 267
            + R    S++R VALCD+LTR+F E++++AGAD +T+S  W GAKGG++TID PGQH++ER+SV+V+  + G VEARF + +PARG  +
Sbjct:  123 FPREMHASKIRNVALCDYLTRQFAESARRAGADAKTRSNSWHGAKGGDMTIDAPGQHVIERSSVMVY--EDGVVEARFNINLPARGRTI 209          
BLAST of mRNA_H-paniculata_contig43316.11046.1 vs. uniprot
Match: A0A2D4BNI8_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNI8_PYTIN)

HSP 1 Score: 103 bits (257), Expect = 7.640e-24
Identity = 45/89 (50.56%), Postives = 68/89 (76.40%), Query Frame = 1
Query:    1 YTRNKIPSQVREVALCDFLTRRFLEASQKAGADQRTQSGGWSGAKGGEITIDEPGQHILERTSVVVHAGDGGTVEARFTVAMPARGEPV 267
            + R    S++R +ALCD+LTR+F +++++AGAD +T+S  W GAKGG++TID PGQH++ER+SV++ A   G VEARF + +PARG  +
Sbjct:  120 FPREMFASKIRNIALCDYLTRQFADSARRAGADAKTRSSSWHGAKGGDMTIDTPGQHVIERSSVMIDAD--GAVEARFMINLPARGRSI 206          
BLAST of mRNA_H-paniculata_contig43316.11046.1 vs. uniprot
Match: A0A2P6TUL7_CHLSO (Isopentenyldiphosphate delta-isomerase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TUL7_CHLSO)

HSP 1 Score: 103 bits (257), Expect = 7.860e-24
Identity = 50/85 (58.82%), Postives = 63/85 (74.12%), Query Frame = 1
Query:   16 IPSQVREVALCDFLTRRFLEASQKAGADQRTQSGGWSGAKGGEITIDEPGQHILERTSVVVHAGDGGTVEARFTVAMPARGEPVV 270
            I S++R  A+CDFLTR F  A   +G D R QSGGW G KGGE+++D PGQH+LER+SV++H    G VEARFTVA+PARG  V+
Sbjct:  159 ISSRMRRTAVCDFLTRSFGAAVAASGGDIRRQSGGWQGEKGGEMSVDRPGQHVLERSSVLIHPD--GAVEARFTVALPARGRSVL 241          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43316.11046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JP10_9PHAE1.500e-3174.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0N8L3_9CHLO1.850e-2767.95Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A835YTL6_9STRA1.150e-2668.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J9RCK7_9CHLO9.570e-2658.89Uncharacterized protein MJ1628 n=1 Tax=Coccomyxa s... [more]
K8ZC40_NANGC9.660e-2559.49Abc transporter atpase (Fragment) n=1 Tax=Nannochl... [more]
K8YTI6_NANGC1.130e-2459.49Abc transporter atpase n=1 Tax=Nannochloropsis gad... [more]
A0A4D9CW80_9STRA1.670e-2459.49Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A8K1F9B2_PYTOL2.190e-2452.81Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BNI8_PYTIN7.640e-2450.56Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A2P6TUL7_CHLSO7.860e-2458.82Isopentenyldiphosphate delta-isomerase n=1 Tax=Chl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43316contigH-paniculata_contig43316:1069..1338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score100.9
Seed ortholog evalue3.2e-19
Seed eggNOG ortholog248742.XP_005646997.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Predicted ATPase of the ABC class
EggNOG OGs2QT9W@2759,34JC7@3041,37Z8Y@33090,COG3044@1
Ec32 ortholog descriptionPredicted ATPase of the ABC class
Ec32 orthologEc-26_004360.1
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930315.7159698-CDS-H-paniculata_contig43316:1068..13381622930315.7159698-CDS-H-paniculata_contig43316:1068..1338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43316 1069..1338 +
1691481238.3481352-CDS-H-paniculata_contig43316:1068..13381691481238.3481352-CDS-H-paniculata_contig43316:1068..1338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43316 1069..1338 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43316.11046.1prot_H-paniculata_contig43316.11046.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43316 1069..1338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43316.11046.1

>prot_H-paniculata_contig43316.11046.1 ID=prot_H-paniculata_contig43316.11046.1|Name=mRNA_H-paniculata_contig43316.11046.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
YTRNKIPSQVREVALCDFLTRRFLEASQKAGADQRTQSGGWSGAKGGEIT
IDEPGQHILERTSVVVHAGDGGTVEARFTVAMPARGEPVV
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mRNA from alignment at H-paniculata_contig43316:1069..1338+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43316.11046.1 ID=mRNA_H-paniculata_contig43316.11046.1|Name=mRNA_H-paniculata_contig43316.11046.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=270bp|location=Sequence derived from alignment at H-paniculata_contig43316:1069..1338+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATACACGCAATAAAATACCATCACAGGTTCGAGAGGTGGCCCTTTGCGA CTTTCTGACAAGACGTTTCCTAGAGGCTTCTCAGAAGGCAGGCGCCGATC AGCGCACGCAGAGCGGAGGGTGGTCCGGAGCTAAGGGGGGCGAGATCACC ATCGATGAACCGGGTCAGCATATCCTGGAGCGGACCAGTGTGGTAGTTCA CGCAGGCGACGGCGGGACAGTGGAGGCTAGGTTCACCGTGGCCATGCCTG CCAGAGGTGAACCTGTTGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig43316:1069..1338+

>mRNA_H-paniculata_contig43316.11046.1 ID=mRNA_H-paniculata_contig43316.11046.1|Name=mRNA_H-paniculata_contig43316.11046.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig43316:1069..1338+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATACACGCAATAAAATACCATCACAGGTTCGAGAGGTGGCCCTTTGCGA
CTTTCTGACAAGACGTTTCCTAGAGGCTTCTCAGAAGGCAGGCGCCGATC
AGCGCACGCAGAGCGGAGGGTGGTCCGGAGCTAAGGGGGGCGAGATCACC
ATCGATGAACCGGGTCAGCATATCCTGGAGCGGACCAGTGTGGTAGTTCA
CGCAGGCGACGGCGGGACAGTGGAGGCTAGGTTCACCGTGGCCATGCCTG
CCAGAGGTGAACCTGTTGTTTATACACGCAATAAAATACCATCACAGGTT
CGAGAGGTGGCCCTTTGCGACTTTCTGACAAGACGTTTCCTAGAGGCTTC
TCAGAAGGCAGGCGCCGATCAGCGCACGCAGAGCGGAGGGTGGTCCGGAG
CTAAGGGGGGCGAGATCACCATCGATGAACCGGGTCAGCATATCCTGGAG
CGGACCAGTGTGGTAGTTCACGCAGGCGACGGCGGGACAGTGGAGGCTAG
GTTCACCGTGGCCATGCCTGCCAGAGGTGAACCTGTTGTT
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