mRNA_H-paniculata_contig43272.11038.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43272.11038.1
Unique NamemRNA_H-paniculata_contig43272.11038.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43272.11038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43272contigH-paniculata_contig43272:421..900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size176
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930314.287408-CDS-H-paniculata_contig43272:422..5321622930314.287408-CDS-H-paniculata_contig43272:422..532Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43272 423..532 -
1691481237.6211658-CDS-H-paniculata_contig43272:422..5321691481237.6211658-CDS-H-paniculata_contig43272:422..532Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43272 423..532 -
1622930314.3073592-CDS-H-paniculata_contig43272:836..9001622930314.3073592-CDS-H-paniculata_contig43272:836..900Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43272 837..900 -
1691481237.6306362-CDS-H-paniculata_contig43272:836..9001691481237.6306362-CDS-H-paniculata_contig43272:836..900Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43272 837..900 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43272.11038.1prot_H-paniculata_contig43272.11038.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43272 423..900 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43272.11038.1

>prot_H-paniculata_contig43272.11038.1 ID=prot_H-paniculata_contig43272.11038.1|Name=mRNA_H-paniculata_contig43272.11038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
QEEARRFCGRAHQRGTPRHNLGNLLCSHVLSSFVMTNSSLVKIFQLRQCQ
RKYTSCRT
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mRNA from alignment at H-paniculata_contig43272:421..900-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43272.11038.1 ID=mRNA_H-paniculata_contig43272.11038.1|Name=mRNA_H-paniculata_contig43272.11038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=480bp|location=Sequence derived from alignment at H-paniculata_contig43272:421..900- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGAAGAGGCCCGGAGATTCTGTGGAAGAGCTCATCAGCGCGGCACGCC
ACGGCACAATCTCGGTACGTGCCATTTATTAGCAGGTGCACTTTTTGGCG
GAAATCTGGAAATCTGACATTTCCAGATTTCGGGCTGTTATCAAAAGCCG
AATTTTACCCACGTAGCTCTTGGTCGGTTTCCTGCGAATGACGCGTTGCC
CGTTGTTCTTGGGGTGGTGTATACCGGTGAGTTTCCCCGTCTACACTCAA
TTACCCATGATCCACCTGTCATGTTTAAGTAGTCGTGCTCCATTAGCCAT
GCTTTAGTAGTCAGTTATGTGACCATCGCCATCCCTGAACAAGCCAAGCA
ATCTACTGTGTTCCGCAGGTAACCTCCTTTGTTCCCACGTATTATCGTCC
TTCGTCATGACCAACAGTTCGTTAGTCAAAATTTTCCAACTAAGACAGTG
CCAGAGGAAGTACACGTCATGTCGGACGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig43272:421..900-

>mRNA_H-paniculata_contig43272.11038.1 ID=mRNA_H-paniculata_contig43272.11038.1|Name=mRNA_H-paniculata_contig43272.11038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig43272:421..900- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGAAGAGGCCCGGAGATTCTGTGGAAGAGCTCATCAGCGCGGCACGCC
ACGGCACAATCTCGCAAGAAGAGGCCCGGAGATTCTGTGGAAGAGCTCAT
CAGCGCGGCACGCCACGGCACAATCTCGGTAACCTCCTTTGTTCCCACGT
ATTATCGTCCTTCGTCATGACCAACAGTTCGTTAGTCAAAATTTTCCAAC
TAAGACAGTGCCAGAGGAAGTACACGTCATGTCGGACGGTAACCTCCTTT
GTTCCCACGTATTATCGTCCTTCGTCATGACCAACAGTTCGTTAGTCAAA
ATTTTCCAACTAAGACAGTGCCAGAGGAAGTACACGTCATGTCGGACG
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