mRNA_H-paniculata_contig4327.11037.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4327.11037.1
Unique NamemRNA_H-paniculata_contig4327.11037.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4327.11037.1 vs. uniprot
Match: UPI001CF595A8 (uncharacterized protein LOC122955859 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF595A8)

HSP 1 Score: 72.4 bits (176), Expect = 4.570e-12
Identity = 44/141 (31.21%), Postives = 68/141 (48.23%), Query Frame = 1
Query:    1 GYDPQTRTVYQLDGCSYHGCKDFNINANRNGLTTKVGGTCPAWVVRAMTARKGRICTNLGYKAEAMTQCRWKKARE-DILKSDSIQRFKIPRIIENRAAMHGVRVESFRMFYGYADGERILDYDVTSLYPFVHTTTEYPVG 420
            G+D +T+TVY+ DGC +HGC               +G T     V A+   K  +    GY   ++ +C W + R  D      +Q  + PR ++ R A  G R  +++++      ERIL YD  SLYP+V+    YP+G
Sbjct:  770 GFDARTQTVYEFDGCFWHGCPTC-FPQRHESHPRLLGRTMDD--VFALRQEKHDLLHQHGYLVRSIWECEWSRRRAADPAIQTFLQSHQTPRPLDPRDAFFGGRTNAYQLYRCVEGDERILYYDFKSLYPYVNKYCRYPIG 907          
BLAST of mRNA_H-paniculata_contig4327.11037.1 vs. uniprot
Match: UPI001CF58B2C (uncharacterized protein LOC122949339 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF58B2C)

HSP 1 Score: 72.0 bits (175), Expect = 5.670e-12
Identity = 44/141 (31.21%), Postives = 68/141 (48.23%), Query Frame = 1
Query:    1 GYDPQTRTVYQLDGCSYHGCKDFNINANRNGLTTKVGGTCPAWVVRAMTARKGRICTNLGYKAEAMTQCRWKKAR-EDILKSDSIQRFKIPRIIENRAAMHGVRVESFRMFYGYADGERILDYDVTSLYPFVHTTTEYPVG 420
            G+D  T+TVY+ DGC +HGC         +    +V G     V  A+   K  +    GY   ++ +C W + R  D      +Q  + PR ++ R A  G R  +++++      ERIL YD  SLYP+V+    YP+G
Sbjct:  343 GFDATTQTVYEFDGCFWHGCP--TCFPQHHESHPRVHGRTMDHVF-ALRQEKHDLLRQQGYLVRSIWECEWSRRRVADPAIRTFLQTHQTPRPLDPRDAFFGGRTNAYQLYRHVEGDERILYYDFKSLYPYVNKYCRYPIG 480          
BLAST of mRNA_H-paniculata_contig4327.11037.1 vs. uniprot
Match: UPI001CF0E36B (uncharacterized protein LOC122964613 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF0E36B)

HSP 1 Score: 70.5 bits (171), Expect = 2.010e-11
Identity = 43/142 (30.28%), Postives = 71/142 (50.00%), Query Frame = 1
Query:    1 GYDPQTRTVYQLDGCSYHGCKDFNINANRNGLTTKVGGTCPAWVVRAMTARKGRICTNLGYKAEAMTQCRW--KKAREDILKSDSIQRFKIPRIIENRAAMHGVRVESFRMFYGYADGERILDYDVTSLYPFVHTTTEYPVG 420
            G+D  T+TVY+ DGC +HGC               +G T     V A+   K  +    GY   ++ +C W  ++A +  +++  +Q  + PR ++ R A  G R  +++++      ERIL YD  SLYP+V+    YP+G
Sbjct:  326 GFDATTQTVYEFDGCFWHGCPTC-FPQRHESHPRLLGRTMDD--VFALRQEKHDLLRQQGYLVRSIWECEWSCRRAADPAIQT-FLQSHQTPRPLDPRDAFFGGRTNAYQLYRCVEGDERILYYDFKSLYPYVNKYCRYPIG 463          
BLAST of mRNA_H-paniculata_contig4327.11037.1 vs. uniprot
Match: A0A7M7MZ20_STRPU (DNA-directed DNA polymerase n=6 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7MZ20_STRPU)

HSP 1 Score: 66.6 bits (161), Expect = 4.800e-10
Identity = 46/145 (31.72%), Postives = 69/145 (47.59%), Query Frame = 1
Query:    1 GYDPQTRTVYQLDGCSYHGCK---DFNINANRNGLTTKVGGTCPAWVVRAMTARKGRICTNL--GYKAEAMTQCRWKKAREDILKSDSIQRFKIPRIIENRAAMHGVRVESFRMFYGYADGERILDYDVTSLYPFVHTTTEYPVG 420
            GY  + +TVY+ +GC +HGC+    FN ++ R G+   +G       +   T  K R   N+   +K   M +C WKK  E+ +     Q    P  +  R A +G R  +  + Y    GE+I   D TSLYP ++    YPVG
Sbjct:  970 GYCLENKTVYEFNGCFWHGCQKCYSFNTDSGRPGVKKTMGE------LYLDTLEKERCVQNILKDWKYVTMWECDWKK-EENSIPQHIKQSLPNPIPLNPREAFYGGRTNASCLLYECKAGEKIKYVDFTSLYPSINKYGSYPVG 1107          
BLAST of mRNA_H-paniculata_contig4327.11037.1 vs. uniprot
Match: UPI00139044AD (uncharacterized protein LOC116601839 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00139044AD)

HSP 1 Score: 64.3 bits (155), Expect = 1.890e-9
Identity = 49/145 (33.79%), Postives = 65/145 (44.83%), Query Frame = 1
Query:    1 GYDPQTRTVYQLDGCSYHGCKDFNINANRNGLTTKVGGTCPAWVVRAMTARKGRICTNLGYKAEAMTQCRWKKAREDILKSDSIQ---RFKIPRIIENRAAMHGVRVESFRMFYG--YADGERILDYDVTSLYPFVHTTTEYPVG 420
            GY   T TVYQ  GC YHGC    +    N LT           +R  T         LGY  E + +C++       +K  +I       +P  +  R A  G R  + ++ Y     +GERI  YD TSLYP+V+ T EYPVG
Sbjct:  145 GYAAATYTVYQYQGCFYHGCSTCFLPDTVNPLTHTTMRE-----LRDHTRATELRLKALGYNYEEVWECQFDARLNSDVKLQAIVGEVEHSVP--LNPRDAFFGGRTNAIQLHYEAKVEEGERIHYYDFTSLYPWVNATCEYPVG 282          
BLAST of mRNA_H-paniculata_contig4327.11037.1 vs. uniprot
Match: UPI00138FCF95 (uncharacterized protein LOC116601915 n=2 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FCF95)

HSP 1 Score: 64.3 bits (155), Expect = 3.030e-9
Identity = 50/148 (33.78%), Postives = 66/148 (44.59%), Query Frame = 1
Query:    1 GYDPQTRTVYQLDGCSYHGCKDFNINANRNGLTTKVGGTCPAWVVRAMTARKGRICTNLGYKAEAMTQCRWKKAREDILKSDSIQRFKIPRIIEN------RAAMHGVRVESFRMFYG--YADGERILDYDVTSLYPFVHTTTEYPVG 420
            GY   T TVYQ  GC YHGC    +    N LT           +R  T         LGY  E + +C++     D   S  +Q   +   +E+      R A  G R  + ++ Y     +GERI  YD TSLYP+V+ T EYPVG
Sbjct:  719 GYAADTNTVYQYQGCFYHGCPTCFLPDTVNPLTHTTMRE-----LRDHTRATELRLRALGYNYEEVWECQF-----DARLSSDVQLQALVGEVEHSIPLNPRDAFFGGRTNAIQLHYEAKVCEGERIHYYDFTSLYPWVNATCEYPVG 856          
BLAST of mRNA_H-paniculata_contig4327.11037.1 vs. uniprot
Match: A0A1Y1KZ67_PHOPY (DNA-directed DNA polymerase (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1KZ67_PHOPY)

HSP 1 Score: 63.9 bits (154), Expect = 4.010e-9
Identity = 42/148 (28.38%), Postives = 72/148 (48.65%), Query Frame = 1
Query:    1 GYDPQTRTVYQLDGCSYHGCKDFNINANRNGLTTKVGGTCPAWVVRAMTARKGRICTNLGYKAEAMTQCRWKKAREDILKSDSIQRFKI------PRIIENRAAMHGVRVESFRMFYGYADG--ERILDYDVTSLYPFVHTTTEYPVG 420
            GY  +T TVY+  GC +HGCK+     NR  +  K+      ++    T  + +   + GY    M +C +KK       S  ++ F +         +  R A +G R  + ++++   DG  E+I+ YDV SLYP+++ T +Y +G
Sbjct:  365 GYCAETNTVYEFQGCYWHGCKE--CFPNRANIDPKLDINTSMFIRNENTVARSKFLRDRGYNLVEMRECDFKKLTAA---SGELKTFILNLGNQDDEPLNPRDAFYGGRTNASKLYHK-CDGISEKIMYYDVCSLYPYINKTCKYVIG 506          
BLAST of mRNA_H-paniculata_contig4327.11037.1 vs. uniprot
Match: A0A6V7Y2G7_9BILA (DNA-directed DNA polymerase n=1 Tax=Meloidogyne enterolobii TaxID=390850 RepID=A0A6V7Y2G7_9BILA)

HSP 1 Score: 62.8 bits (151), Expect = 1.020e-8
Identity = 42/144 (29.17%), Postives = 68/144 (47.22%), Query Frame = 1
Query:    1 GYDPQTRTVYQLDGCSYHGCKDFNINANR---NGLTTKVGGTCPAWVVRAMTARKGRICTNLGYKAEAMTQCRWKKARE-DILKSDSIQRFKIPRIIENRAAMHGVRVESFRMFYGYADGERILDYDVTSLYPFVHTTTEYPVG 420
            G+  + +   +++GC +HGC+      N    NG++        A   R   AR+     + G   +   +C  +   E D     S +++     I+ RA   G R    ++FY   +GE+I  YDVTSLYPF++ +T YPVG
Sbjct:  524 GWIEEEQLGIEINGCVWHGCEKCYPEDNTILPNGIS--------AGKQREKDARRMEYIKSQGVNVQVFWECEIRSMMEKDREMRSSFKKYLDDGPIDLRACFFGGRTGPLQLFYSPKEGEKISYYDVTSLYPFINVSTNYPVG 659          
BLAST of mRNA_H-paniculata_contig4327.11037.1 vs. uniprot
Match: UPI001CF30816 (uncharacterized protein LOC122961457 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF30816)

HSP 1 Score: 62.4 bits (150), Expect = 1.150e-8
Identity = 46/152 (30.26%), Postives = 69/152 (45.39%), Query Frame = 1
Query:    1 GYDPQTRTVYQLDGCSYHGCKDFNINANRNGLTTKVGGTCPAWVVRAM----TARKGRICTN--------LGYKAEAMTQCRWKKAREDILKSDSIQRFKIPRIIENRAAMHGVRVESFRMFYGYADGERILDYDVTSLYPFVHTTTEYPVG 420
            G+D  T+TVY+ DGC +HGC  F         TT    +   W         T+RK R  ++        LG +  A+T C+             +Q  + PR ++ R A  G R  +++++      ERIL YD  SLYP+V+    YP+G
Sbjct:   94 GFDAMTQTVYEFDGCFWHGCDLF--------FTTPRTASQTPWSYHGRRLRPTSRKTRPSSSTWLPRPVDLGMRVVALT-CQ-----------TFLQTHQTPRPLDPRDAFFGGRTNAYQLYRCVEGDERILYYDFKSLYPYVNKYCRYPIG 225          
BLAST of mRNA_H-paniculata_contig4327.11037.1 vs. uniprot
Match: UPI001390492C (uncharacterized protein LOC116619715 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI001390492C)

HSP 1 Score: 61.6 bits (148), Expect = 2.300e-8
Identity = 47/143 (32.87%), Postives = 64/143 (44.76%), Query Frame = 1
Query:    1 GYDPQTRTVYQLDGCSYHGCKDFNINANRNGLTTKVGGTCPAWVVRAMTARKGRICTNLGYKAEAMTQCRWK-KAREDILKSDSIQRFKIPRIIENRAAMHGVRVESFRMFYG--YADGERILDYDVTSLYPFVHTTTEYPVG 420
            GY   T TVYQ  GC YHGC         N LT           +R  T         LGY  E + +C++  +   D+     +   +  R +E R A  G R  + ++       +GE+I  YD TSLYP+V+ T EYPVG
Sbjct:  138 GYAAATNTVYQYQGCFYHGCPMCFQPDTVNPLTNTT-----MQELREHTRATELRLKALGYNYEEVWECQFDAQLNNDVQLQALVGDVEHSRPLEPRDAFFGGRTNAIQLHCEAKVEEGEQIHYYDFTSLYPWVNATCEYPVG 275          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4327.11037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001CF595A84.570e-1231.21uncharacterized protein LOC122955859 n=1 Tax=Acrop... [more]
UPI001CF58B2C5.670e-1231.21uncharacterized protein LOC122949339 n=1 Tax=Acrop... [more]
UPI001CF0E36B2.010e-1130.28uncharacterized protein LOC122964613 n=1 Tax=Acrop... [more]
A0A7M7MZ20_STRPU4.800e-1031.72DNA-directed DNA polymerase n=6 Tax=Strongylocentr... [more]
UPI00139044AD1.890e-933.79uncharacterized protein LOC116601839 n=1 Tax=Nemat... [more]
UPI00138FCF953.030e-933.78uncharacterized protein LOC116601915 n=2 Tax=Nemat... [more]
A0A1Y1KZ67_PHOPY4.010e-928.38DNA-directed DNA polymerase (Fragment) n=1 Tax=Pho... [more]
A0A6V7Y2G7_9BILA1.020e-829.17DNA-directed DNA polymerase n=1 Tax=Meloidogyne en... [more]
UPI001CF308161.150e-830.26uncharacterized protein LOC122961457 n=1 Tax=Acrop... [more]
UPI001390492C2.300e-832.87uncharacterized protein LOC116619715 n=1 Tax=Nemat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4327contigH-paniculata_contig4327:8998..9420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score66.6
Seed ortholog evalue1e-08
Seed eggNOG ortholog7668.SPU_027102-tr
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMGD@1,2QQ9V@2759,39B3J@33154,3BKG5@33208,3CTR5@33213
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930313.9052572-CDS-H-paniculata_contig4327:8997..94201622930313.9052572-CDS-H-paniculata_contig4327:8997..9420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4327 8998..9420 -
1691481237.6099305-CDS-H-paniculata_contig4327:8997..94201691481237.6099305-CDS-H-paniculata_contig4327:8997..9420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4327 8998..9420 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4327.11037.1prot_H-paniculata_contig4327.11037.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4327 8998..9420 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4327.11037.1

>prot_H-paniculata_contig4327.11037.1 ID=prot_H-paniculata_contig4327.11037.1|Name=mRNA_H-paniculata_contig4327.11037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp
GYDPQTRTVYQLDGCSYHGCKDFNINANRNGLTTKVGGTCPAWVVRAMTA
RKGRICTNLGYKAEAMTQCRWKKAREDILKSDSIQRFKIPRIIENRAAMH
GVRVESFRMFYGYADGERILDYDVTSLYPFVHTTTEYPVGE
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mRNA from alignment at H-paniculata_contig4327:8998..9420-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4327.11037.1 ID=mRNA_H-paniculata_contig4327.11037.1|Name=mRNA_H-paniculata_contig4327.11037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=423bp|location=Sequence derived from alignment at H-paniculata_contig4327:8998..9420- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTACGATCCGCAGACTAGAACGGTCTACCAGCTCGACGGCTGCAGCTA CCACGGGTGTAAGGACTTTAACATCAACGCTAACCGGAACGGTCTCACCA CCAAAGTAGGTGGGACTTGTCCAGCGTGGGTAGTCAGGGCCATGACCGCA AGAAAGGGTCGCATCTGCACCAACCTAGGGTACAAGGCCGAAGCAATGAC CCAGTGCAGATGGAAGAAGGCGAGAGAAGACATTCTAAAAAGTGACAGCA TACAACGATTCAAGATCCCGCGAATAATCGAGAATCGAGCGGCTATGCAT GGAGTGCGAGTGGAGTCGTTCAGAATGTTTTACGGATATGCAGATGGGGA ACGAATTCTCGACTACGATGTCACCTCCCTCTATCCCTTTGTCCACACGA CCACCGAGTACCCCGTAGGGGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig4327:8998..9420-

>mRNA_H-paniculata_contig4327.11037.1 ID=mRNA_H-paniculata_contig4327.11037.1|Name=mRNA_H-paniculata_contig4327.11037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig4327:8998..9420- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTACGATCCGCAGACTAGAACGGTCTACCAGCTCGACGGCTGCAGCTA
CCACGGGTGTAAGGACTTTAACATCAACGCTAACCGGAACGGTCTCACCA
CCAAAGTAGGTGGGACTTGTCCAGCGTGGGTAGTCAGGGCCATGACCGCA
AGAAAGGGTCGCATCTGCACCAACCTAGGGTACAAGGCCGAAGCAATGAC
CCAGTGCAGATGGAAGAAGGCGAGAGAAGACATTCTAAAAAGTGACAGCA
TACAACGATTCAAGATCCCGCGAATAATCGAGAATCGAGCGGCTATGCAT
GGAGTGCGAGTGGAGTCGTTCAGAATGTTTTACGGATATGCAGATGGGGA
ACGAATTCTCGACTACGATGTCACCTCCCTCTATCCCTTTGTCCACACGA
CCACCGAGTACCCCGTAGGGGAAGGCTACGATCCGCAGACTAGAACGGTC
TACCAGCTCGACGGCTGCAGCTACCACGGGTGTAAGGACTTTAACATCAA
CGCTAACCGGAACGGTCTCACCACCAAAGTAGGTGGGACTTGTCCAGCGT
GGGTAGTCAGGGCCATGACCGCAAGAAAGGGTCGCATCTGCACCAACCTA
GGGTACAAGGCCGAAGCAATGACCCAGTGCAGATGGAAGAAGGCGAGAGA
AGACATTCTAAAAAGTGACAGCATACAACGATTCAAGATCCCGCGAATAA
TCGAGAATCGAGCGGCTATGCATGGAGTGCGAGTGGAGTCGTTCAGAATG
TTTTACGGATATGCAGATGGGGAACGAATTCTCGACTACGATGTCACCTC
CCTCTATCCCTTTGTCCACACGACCACCGAGTACCCCGTAGGGGAA
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