mRNA_H-paniculata_contig4326.11036.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4326.11036.1 vs. uniprot
Match: D8LNE5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNE5_ECTSI) HSP 1 Score: 510 bits (1314), Expect = 6.880e-159 Identity = 378/834 (45.32%), Postives = 474/834 (56.83%), Query Frame = 1
Query: 925 GVKGIFDGAIAESPVLMMTSMAMQLQSLEMEIQTLREHTASLKQTERQKERERQAENVVRE---KRRADDSSGRN----SMLSEGQLVSVKQRLGYPASLARNQA---QAEQFQEMGRQMGELQRELQTLREREDERDFRNDQSLEAIEALIGEAGEESARLINVQAEANSRAIDTLLKELGAQAAHDSCEKVRLPLVALKVELRSMYSSLAATSSDEASAKLVRELEGIRHLLTSV----AERAKELEEEIGDPVRLARSIIAEDLQARRFEDMTTDLGTTIFALIKAQVLQAKRAANXXXXXXXXXXNFPSSSPCFVYSHSSSNALSSCVSKAV-----QGSKNGIMGDGNASNSGANGRAGTSAPPEAWAKLSSLTYTRYATGEKLPFPAGLAGLLKAISDVLNHCVATGDLAV-----------------------------------------------------------RLSVTLEDLTLYVAQRADKEREAVTRQVSVPMDGAKAKLSEMEETLAGFQRTMHLVLAEVDADRERSDAIKALGTTVDELQTLFARVRGELQSKAGASEIEAALEAMASKINESENHQSKLQRLAHTLGKDHNSSAAIKRLQIELEQARSIAVLALAPSHSDMLIGSKCLSCNRPLGGMGLQPIPKPPEEWYTGAGSLGGRVYRFMDTTTNSGSTRSAGSGGGC----------SIGASKAPGQTQPVMTPGKIKPDGSVTS-------------GRNGPILFERTGGNAEVSTQG---LKGRGLRGGGGPG----ADGNVNVSKYPRLVPLTAPKTAPATERLYHKTKNSGGSSTST 3102
GV+G+FDGA+ +PVLM TSMAMQLQS E E++ L+ SL E + +RQA V +E K +D R+ + L + KQ+ P +A++ + +E+ +MGR +G+LQRE+ +R+R ++++ R + SLE +EALI EE R QA+ N+ AI+ LL L + A + + V LV LK+ELRS+ SSL A SS+E R I L + A R ++ IG+ + F D TDLGTT+FA +KAQVLQA+RA + XXXXXXXXX G G+ +S SGA+ P+AW KL+ LTYTR+ T EK+PFPAG+ LLKA+S+VLNHCV TGDLAV RLSVTLEDLT+YVAQRADKERE+V RQ+S P+D K KL EME TLAGFQRTMHLVL+EVDADRERS AI LGTTV+ +Q LF+R+ EL SKAGASEIE ALE M KIN+S N Q+KLQRL LGKD NSS A+KRLQIELEQAR+ A+L++ PS D+LIGSKCLSCNRPLGG G +PK +EWYTGAG LGGR R ++ +G + G IG S+ PG+TQPVMTPGKI P GS T+ G GP+LFERTG +V G LKGR LRGGGG ADGNV+VSKYPRLVPLTAPK+AP E+LY + N G+++ST
Sbjct: 387 GVQGMFDGAMGGNPVLMFTSMAMQLQSQETELENLQHQLMSL---EAGWDGQRQARRVGQEDVNKSHHNDPHSRDHQAKAALDSDEYAHPKQQHSGPQPVAQSMSLERPSEESSQMGRDLGKLQREIIAVRDRVEDQEKRTEISLEELEALIAAKDEEYNRRFLKQAQQNADAINRLLARLDSNAVDEKSKVVHKALVELKLELRSLLSSLEAISSNERGRGCWRRRLEIPLRLPKISPWTALRQWWVKSYIGEKEGRKGGE-----EREHFSDRATDLGTTLFAFVKAQVLQARRAEDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGSEGVE----SSTSGAS--------PQAWVKLNCLTYTRHGTSEKMPFPAGMVVLLKALSNVLNHCVGTGDLAVGTCVCFDLTEAPNHFTTPRLSLFKTWVRTTLTRNAPHKSPGCPPRKLKRHNDRIAKIKIRLSVTLEDLTVYVAQRADKERESVIRQLSAPVDSVKGKLGEMENTLAGFQRTMHLVLSEVDADRERSQAIADLGTTVETMQGLFSRLSKELSSKAGASEIEKALEDMTLKINKSANEQTKLQRLGRVLGKDQNSSVAMKRLQIELEQARATAILSMVPSDKDVLIGSKCLSCNRPLGGFGTPQVPKGLDEWYTGAGGLGGRNDRVVEVGGENGGSGHGEQGXXXXXXXXXSSVNGIGTSRTPGRTQPVMTPGKIAPRGSATASSASGEPGTVPPKGPQGPLLFERTGTTDDVGGSGGPGLKGRLLRGGGGXSGSVSADGNVSVSKYPRLVPLTAPKSAPTVEKLY--STNGRGATSST 1198
BLAST of mRNA_H-paniculata_contig4326.11036.1 vs. uniprot
Match: A0A6H5JL36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL36_9PHAE) HSP 1 Score: 387 bits (995), Expect = 5.150e-119 Identity = 290/648 (44.75%), Postives = 356/648 (54.94%), Query Frame = 1
Query: 1237 EMGRQMGELQRELQTLREREDERDFRNDQSLEAIEALIGEAGEESARLINVQAEANSRAIDTLLKELGAQAAHDSCEKVRLPLVALKVELRSMYSSLAATSSDEASAKLVRELEGIRHLLTSVAERAKELEEEIGDPVRLARSIIAEDLQARRFEDMTTDLGTTIFALIKAQVLQAKRAANXXXXXXXXXXNFPSSSPCFVYSHSSSNALSSCVSKAVQGSKNGIMGDG-NASNSGANGRAGTSAPPEAWAKLSSLTYTRYATGEKLPFPAGLAGLLKAISDVLNHCVATGDLAVRLSVTLEDLTLYVAQRADKEREAVTRQVSVPMDGAKAKLSEMEETLAGFQRTMHLVLAEVDADRERSDAIKALGTTVDELQTLFARVRGELQSKAGASEIEAALEAMASKINESENHQSKLQRLAHTLGKDHNSSAAIKRLQIELEQARSIAVLALAPSHSDMLIGSKCLSCNRPLGGMGLQPIPKPPEEWYTGAGSLGGRVYRFMDTTTNSGSTRSAGSGGG----------------------------CSIGASKAPGQTQPVMTPGKIKPDGSVTS------------------GRNGPILFERTGGNAEVSTQG---LKGRGLRGGGGPGADG----NVNVSKYPRLV 3018
+MGR +G LQRE+ +R R ++++ R + SLE +EALI EE R QA+ N+ AI+ LL+ L + A + + V LV LK+ELRS+ SSL SS+E SA +R + IRHLL +++ERA+ LEEEIGD LA+ I+ + A E++ + +VLQA+RA XXXXXXXXXX G +S SGA+ P+AWAKL+ LTYTR+ T EK+PFPAG+ LLKA+S+VLNHCV TGDLA+RLSVTLEDLT+YVAQRADKERE+V RQ+S P+D K KL EME LAGFQRTMHLVL+EVDADRERS AI LGTTV+ +Q LF+R+ EL SKAGASEIE ALE M SKIN+S N Q+KLQRL LGKD NSS A+KRLQIELEQ +PK +EWYTGAG LGG R ++ GGG PG+TQPVMTPGKI P GS T+ G GP+LFERTG +V G LKGR LRGGG NV+VSK +
Sbjct: 3 QMGRDLGNLQREIVAVRNRVEDQEKRTEISLEELEALIAAKDEEYKRRFRKQAQQNADAINRLLERLDSNAVDEKSKVVHKALVELKLELRSLLSSLEGISSNEVSANKLRSMGAIRHLLVNISERARVLEEEIGDLATLAKDIVMDSPAAMVGEELQWGKEGRKGGE-EREVLQARRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGVESSTSGAS--------PQAWAKLNYLTYTRHGTSEKMPFPAGMVVLLKALSNVLNHCVGTGDLAIRLSVTLEDLTVYVAQRADKERESVIRQLSAPVDSVKEKLGEMENALAGFQRTMHLVLSEVDADRERSQAIAELGTTVETMQRLFSRLSEELSSKAGASEIEKALEEMTSKINKSANEQTKLQRLGRVLGKDQNSSVAMKRLQIELEQ------------------------------------VPKGLDEWYTGAGGLGGPKDRVVEV------------GGGNDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGRTQPVMTPGKIVPRGSATAXXXXXXXXSGEPGIVPPKGPQGPLLFERTGTTDDVGGSGGPGLKGRVLRGGGXXXXXXXXXXNVSVSKEEHAI 593
BLAST of mRNA_H-paniculata_contig4326.11036.1 vs. uniprot
Match: A0A836C707_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C707_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 4.200e-16 Identity = 88/293 (30.03%), Postives = 126/293 (43.00%), Query Frame = 1
Query: 2038 FPAGLAGLLKAISDVLNHCVATGDLAVRLSVTLEDLTLYVAQRADKEREAVTRQVSVPMDGAKAKLSEMEETLAG----FQRTMHLVLAEVDADRERSDAIKALGTTVDELQTLFARVRGELQSKAGASEIEAALEAMASKINESENHQSKLQRLAHTLGKDHNSSAAIKRLQIELEQARSIAVLALAPSHSDMLIGSKCLSCNRPLG--------------GMGLQPIPKPPEEWYTGA----GSLGGRVYRFMDTTTNSGSTRSAGSGGGCSIGASKAPGQTQPVMTPGKI 2850
F GLA LL A+ L+ C +TG+LAVRLSV + DL + E E + KL +AG QR++HL+++EV+ D R +A+K L V +L+ + V+ E+ +KAGA E++A+L+ MA K+ + A + L + L SI +L L S LIG+KCL+CNRP GM L WY G + G RV +D T S+ GQTQ V+TP +
Sbjct: 528 FAEGLAALLSALKACLDGCTSTGELAVRLSVAVSDLAAFARSTCSAEHEFTVEH--------QGKLESQVLAMAGQHDTLQRSLHLLISEVENDVARREAVKGLEGAVLDLRKAYEMVKAEMGNKAGADELQASLQDMAQKLQ---------------------GAVAPQVLTLTLT---SILILIL----SRFLIGTKCLACNRPFASSYQSLFTAHTNTHGMALAN----GTAWYPGVKPRPAAKGDRVLEPLDYIT------------------SRPKGQTQAVVTPATL 762 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4326.11036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4326.11036.1 >prot_H-paniculata_contig4326.11036.1 ID=prot_H-paniculata_contig4326.11036.1|Name=mRNA_H-paniculata_contig4326.11036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1027bp MACRVASLENDMAKMQGLWNMKKGQRVIEVWMGLLNRKSYKPSDCNDPVEback to top mRNA from alignment at H-paniculata_contig4326:3775..14740+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4326.11036.1 ID=mRNA_H-paniculata_contig4326.11036.1|Name=mRNA_H-paniculata_contig4326.11036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10966bp|location=Sequence derived from alignment at H-paniculata_contig4326:3775..14740+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4326:3775..14740+ >mRNA_H-paniculata_contig4326.11036.1 ID=mRNA_H-paniculata_contig4326.11036.1|Name=mRNA_H-paniculata_contig4326.11036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6162bp|location=Sequence derived from alignment at H-paniculata_contig4326:3775..14740+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |